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ChannelsDB: database of biomacromolecular tunnels and pores

Lukáš Pravda, David Sehnal, Radka Svobodová Vařeková, Veronika Navrátilová, Dominik Toušek, Karel Berka, Michal Otyepka, Jaroslav Koča
2017 Nucleic Acids Research  
ChannelsDB (http://ncbr.muni.cz/ChannelsDB) is a database providing information about the positions, geometry and physicochemical properties of channels (pores and tunnels) found within biomacromolecular  ...  As such, ChannelsDB provides an invaluable resource for research related to deciphering the biological function of biomacromolecular channels.  ...  And finally, the PDBsum (38) database contains information about tunnels and pores predicted for individual PDB entries.  ... 
doi:10.1093/nar/gkx868 pmid:29036719 pmcid:PMC5753359 fatcat:e43a7rz7vjfxfiatroowzdltau

MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

Lukáš Pravda, David Sehnal, Dominik Toušek, Veronika Navrátilová, Václav Bazgier, Karel Berka, Radka Svobodová Vařeková, Jaroslav Koča, Michal Otyepka
2018 Nucleic Acids Research  
MOLEonline is an interactive, web-based application for the detection and characterization of channels (pores and tunnels) within biomacromolecular structures.  ...  Here we present the application of MOLEonline for structural analyses of ␣-hemolysin and transient receptor potential mucolipin 1 (TRMP1) pores.  ...  INTRODUCTION Channels, which comprise tunnels and pores, are important features of biomolecular structures.  ... 
doi:10.1093/nar/gky309 pmid:29718451 pmcid:PMC6030847 fatcat:6ghhwqjhqfefjdntqb3jom34ju