Filters








4,884 Hits in 5.7 sec

Database resources of the National Center for Biotechnology Information

D. L. Wheeler
2004 Nucleic Acids Research  
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi. nlm.nih.gov) provides analysis and retrieval resources  ...  GENES AND EXPRESSION Gene Gene (23) provides an interface to curated sequences and descriptive information about genes with links to a wide variety of gene-related resources.  ...  and expression D Probe 31 367 498 Genes and expression D Gene a 14 167 800 Genes and expression C, N UniGene a 6 467 085 Genes and expression N GEO Datasets a 1 044 344 Genes and expression  ... 
doi:10.1093/nar/gki062 pmid:15608222 pmcid:PMC540016 fatcat:pxy5l62n65d2pmslx3noinamya

Temporal suppression and augmentation of click-evoked otoacoustic emissions

Sarah Verhulst, James M. Harte, Torsten Dau
2008 Hearing Research  
room acoustic modeling algorithms.  ...  Measurements are normalized according to ASTM E 1007 and proposed normalized impact sound rating ͑NISR͒ procedures to provide a reasonably consistent set for analysis.  ...  The effects of AtCAD1 gene expression silencing in Col ecotype were tested using the same method.  ... 
doi:10.1016/j.heares.2008.09.008 pmid:18926894 fatcat:bijdlpxpzfcsrjeefayvvu4pl4

Temporal suppression and augmentation of click‐evoked otoacoustic emissions

Sarah Verhulst, James M. Harte, Torsten Dau
2008 Journal of the Acoustical Society of America  
room acoustic modeling algorithms.  ...  Measurements are normalized according to ASTM E 1007 and proposed normalized impact sound rating ͑NISR͒ procedures to provide a reasonably consistent set for analysis.  ...  The effects of AtCAD1 gene expression silencing in Col ecotype were tested using the same method.  ... 
doi:10.1121/1.2935694 fatcat:z6yidzqqendznbmrczb3woaiv4

Database resources of the National Center for Biotechnology Information

E. W. Sayers, T. Barrett, D. A. Benson, E. Bolton, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, S. Federhen, M. Feolo, I. M. Fingerman (+30 others)
2010 Nucleic Acids Research  
ABSTRACT In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov) provides analysis and retrieval resources  ...  Autho r info rma tio n ► Artic le no te s ► Co pyrig ht a nd Lic e nse info rma tio n ► Disc la ime r This a rtic le ha s be e n c ite d by o the r a rtic le s in PMC.  ...  GENES AND EXPRESSION Gene Gene (23) provides an interface to curated sequences and descriptive information about genes with links to a wide variety of gene-related resources.  ... 
doi:10.1093/nar/gkq1172 pmid:21097890 pmcid:PMC3013733 fatcat:evc3u4jqubchjoqyvc3ff5qple

Poly(A)-ClickSeq: click-chemistry for next-generation 3′-end sequencing without RNA enrichment or fragmentation [article]

Andrew Routh, Ping Ji, Elizabeth Jaworski, Zheng Xia, Wei Li, Eric J Wagner
2017 bioRxiv   pre-print
As a proof-of-principle, we utilized PAC-seq to explore the poly(A) landscape of both human and Drosophila cells in culture and observed outstanding overlap with existing poly(A) databases and also identified  ...  We recently reported a click-chemistry based method for generating RNAseq libraries called ″ClickSeq″.  ...  We are indebted to Todd Albrecht, Mariano Garcia-Blanco, Shelton Bradrick and members of their lab for sharing lab space, helpful discussions and other research support.  ... 
doi:10.1101/109272 fatcat:yjhhwe6hvbhhlohzhxpeazwjxe

Database resources of the National Center for Biotechnology Information

2012 Nucleic Acids Research  
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi. nlm.nih.gov) provides analysis and retrieval resources  ...  GENES AND EXPRESSION Gene Gene (25) provides an interface to curated sequences and descriptive information about genes with links to NCBI's Map Viewer, Evidence Viewer, BLink, protein domains from  ...  Proteins 794 663 N GEO profiles Genes and expression 63 811 486 D Probe Genes and expression 14 248 527 D Gene Genes and expression 11 290 372 C, N UniGene Genes and expression 5 831  ... 
doi:10.1093/nar/gks1189 pmid:23193264 pmcid:PMC3531099 fatcat:hp2biq76anavbavtbbz4jcvwqm

Database resources of the National Center for Biotechnology Information

D. L. Wheeler, T. Barrett, D. A. Benson, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, R. Edgar, S. Federhen, L. Y. Geer, Y. Kapustin (+18 others)
2007 Nucleic Acids Research  
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other  ...  Splign uses a version of the Needleman-Wunsch algorithm (47) that accounts for splice signals in combination with a compartmentalization algorithm to identify possible locations of genes and their copies  ...  GENES AND EXPRESSION Entrez Gene Entrez Gene (23) provides an interface to curated sequences and descriptive information about genes with links to NCBI's Map Viewer, Evidence Viewer, Model Maker, BLink  ... 
doi:10.1093/nar/gkl1031 pmid:17170002 pmcid:PMC1781113 fatcat:pj7gnwwlpnbmza7c4ae7yatega

Database Resources of the National Center for Biotechnology Information

2016 Nucleic Acids Research  
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other  ...  Splign uses a version of the Needleman-Wunsch algorithm (47) that accounts for splice signals in combination with a compartmentalization algorithm to identify possible locations of genes and their copies  ...  GENES AND EXPRESSION Entrez Gene Entrez Gene (23) provides an interface to curated sequences and descriptive information about genes with links to NCBI's Map Viewer, Evidence Viewer, Model Maker, BLink  ... 
doi:10.1093/nar/gkw1071 pmid:27899561 pmcid:PMC5210554 fatcat:itaqk5uwv5bv7gm7f55zunbcwq

Database resources of the National Center for Biotechnology Information

D. L. Wheeler, T. Barrett, D. A. Benson, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, R. Edgar, S. Federhen, M. Feolo, L. Y. Geer (+21 others)
2007 Nucleic Acids Research  
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and  ...  RESOURCES FOR THE ANALYSIS OF PATTERNS OF GENE EXPRESSION Resources for the analysis of gene expression GENSAT.  ...  Splign uses a version of the Needleman-Wunsch algorithm (31) that accounts for splice signals in combination with a compartmentization algorithm to identify possible locations of genes and their copies  ... 
doi:10.1093/nar/gkm1000 pmid:18045790 pmcid:PMC2238880 fatcat:geht7s3fgnguvnvfnga5kd2zmq

Towards a Holistic, Yet Gene-Centered Analysis of Gene Expression Profiles: A Case Study of Human Lung Cancers

Yuchun Guo, Gabriel S. Eichler, Ying Feng, Donald E. Ingber, Sui Huang
2006 Journal of Biomedicine and Biotechnology  
We use a self-organizing maps-based software, the gene expression dynamics inspector (GEDI) to analyze gene expression profiles of various lung tumors.  ...  Genome-wide gene expression profile studies encompass increasingly large number of samples, posing a challenge to their presentation and interpretation without losing the notion that each transcriptome  ...  ACKNOWLEDGMENTS This work was supported by grants from the Air Force Office of Scientific Research (F49620-01-1-0564 to SH), NIH (CA55833 to DEI), and NASA (NN A04CC96G to DEI).  ... 
doi:10.1155/jbb/2006/69141 pmid:17489018 pmcid:PMC1698264 fatcat:av3k7piwsvhghn2omwlfieckj4

Database resources of the National Center for Biotechnology Information

E. W. Sayers, T. Barrett, D. A. Benson, E. Bolton, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, S. Federhen, M. Feolo, I. M. Fingerman (+31 others)
2011 Nucleic Acids Research  
Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized datasets.  ...  This work is written by (a) US Government employee(s) and is in the public domain in the US.  ...  Probe The Probe database is a registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications including genotyping, SNP discovery, gene expression, gene silencing  ... 
doi:10.1093/nar/gkr1184 pmid:22140104 pmcid:PMC3245031 fatcat:zxmwupa435gfzcpusnv7oe3qnm

A Drosophila protein-interaction map centered on cell-cycle regulators

Clement A Stanyon, Guozhen Liu, Bernardo A Mangiola, Nishi Patel, Loic Giot, Bing Kuang, Huamei Zhang, Jinhui Zhong, Russell L Finley
2004 Genome Biology  
The map includes a large number of novel interactions with potential biological significance.  ...  In the most extensive screen to date, a Gal4-based two-hybrid system was used recently to detect over 20,000 interactions among Drosophila proteins.  ...  We are particularly grateful to Mike McKenna for his help in the initial stages of this project. This work was supported by NIH grants HG01536 and GM62403.  ... 
doi:10.1186/gb-2004-5-12-r96 pmid:15575970 pmcid:PMC545799 fatcat:gbe3sn43jnaxvcukddckjeuesi

Database resources of the National Center for Biotechnology Information

Richa Agarwala, Tanya Barrett, Jeff Beck, Dennis A Benson, Colleen Bollin, Evan Bolton, Devon Bourexis, J Rodney Brister, Stephen H Bryant, Kathi Canese, Mark Cavanaugh, Chad Charowhas (+61 others)
2017 Nucleic Acids Research  
Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets.  ...  Resources that were updated in the past year include the genome data viewer, a human genome resources page, Gene, virus variation, OSIRIS, and PubChem.  ...  ACKNOWLEDGEMENTS Funding to pay the Open Access publication charges for this article was provided by the Intramural Research Program of the National Institutes of Health, National Library of Medicine.  ... 
doi:10.1093/nar/gkx1095 pmid:29140470 pmcid:PMC5753372 fatcat:v2wabu3mezcpnbvn7pnssppfdy

Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation

Andrew Routh, Ping Ji, Elizabeth Jaworski, Zheng Xia, Wei Li, Eric J. Wagner
2017 Nucleic Acids Research  
We recently reported a click-chemistry based method for generating RNAseq libraries called 'Click-Seq'.  ...  As a proof-of-principle, we utilized PAC-seq to explore the poly(A) landscape of both human and Drosophila cells in culture and observed outstanding overlap with existing poly(A) databases and also identified  ...  We are indebted to Todd Albrecht, Mariano Garcia-Blanco, Shelton Bradrick and members of their lab for sharing lab space, helpful discussions and other research support.  ... 
doi:10.1093/nar/gkx286 pmid:28449108 pmcid:PMC5499544 fatcat:gufk7t472bfk3nvm6axljx5234

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

2019 Nucleic Acids Research  
PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated  ...  Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze  ...  PathoSystems Resource Integration Center (PATRIC) began as one of the original centers tasked with supporting comparative analysis of bacterial pathogens (1) (2) (3) .  ... 
doi:10.1093/nar/gkz943 pmid:31667520 pmcid:PMC7145515 fatcat:jmpq54pzkvhcfaxjzr25f2ypri
« Previous Showing results 1 — 15 out of 4,884 results