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Database resources of the National Center for Biotechnology Information
2004
Nucleic Acids Research
Preserved Fulltext
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi. nlm.nih.gov) provides analysis and retrieval resources ...
GENES AND EXPRESSION Gene Gene (23) provides an interface to curated sequences and descriptive information about genes with links to a wide variety of gene-related resources. ...
and expression
D
Probe
31 367 498
Genes and expression
D
Gene a
14 167 800
Genes and expression
C, N
UniGene a
6 467 085
Genes and expression
N
GEO Datasets a
1 044 344
Genes and expression ...
doi:10.1093/nar/gki062
pmid:15608222
pmcid:PMC540016
fatcat:pxy5l62n65d2pmslx3noinamya
Temporal suppression and augmentation of click-evoked otoacoustic emissions
2008
Hearing Research
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room acoustic modeling algorithms. ...
Measurements are normalized according to ASTM E 1007 and proposed normalized impact sound rating ͑NISR͒ procedures to provide a reasonably consistent set for analysis. ...
The effects of AtCAD1 gene expression silencing in Col ecotype were tested using the same method. ...
doi:10.1016/j.heares.2008.09.008
pmid:18926894
fatcat:bijdlpxpzfcsrjeefayvvu4pl4
Temporal suppression and augmentation of click‐evoked otoacoustic emissions
2008
Journal of the Acoustical Society of America
Preserved Fulltext
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room acoustic modeling algorithms. ...
Measurements are normalized according to ASTM E 1007 and proposed normalized impact sound rating ͑NISR͒ procedures to provide a reasonably consistent set for analysis. ...
The effects of AtCAD1 gene expression silencing in Col ecotype were tested using the same method. ...
doi:10.1121/1.2935694
fatcat:z6yidzqqendznbmrczb3woaiv4
Database resources of the National Center for Biotechnology Information
2010
Nucleic Acids Research
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ABSTRACT In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov) provides analysis and retrieval resources ...
Autho r info rma tio n ► Artic le no te s ► Co pyrig ht a nd Lic e nse info rma tio n ► Disc la ime r This a rtic le ha s be e n c ite d by o the r a rtic le s in PMC. ...
GENES AND EXPRESSION Gene Gene (23) provides an interface to curated sequences and descriptive information about genes with links to a wide variety of gene-related resources. ...
doi:10.1093/nar/gkq1172
pmid:21097890
pmcid:PMC3013733
fatcat:evc3u4jqubchjoqyvc3ff5qple
Poly(A)-ClickSeq: click-chemistry for next-generation 3′-end sequencing without RNA enrichment or fragmentation
[article]
2017
bioRxiv
pre-print
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As a proof-of-principle, we utilized PAC-seq to explore the poly(A) landscape of both human and Drosophila cells in culture and observed outstanding overlap with existing poly(A) databases and also identified ...
We recently reported a click-chemistry based method for generating RNAseq libraries called ″ClickSeq″. ...
We are indebted to Todd Albrecht, Mariano Garcia-Blanco, Shelton Bradrick and members of their lab for sharing lab space, helpful discussions and other research support. ...
doi:10.1101/109272
fatcat:yjhhwe6hvbhhlohzhxpeazwjxe
Database resources of the National Center for Biotechnology Information
2012
Nucleic Acids Research
Preserved Fulltext
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The file type is application/pdf.
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi. nlm.nih.gov) provides analysis and retrieval resources ...
GENES AND EXPRESSION
Gene Gene (25) provides an interface to curated sequences and descriptive information about genes with links to NCBI's Map Viewer, Evidence Viewer, BLink, protein domains from ...
Proteins
794 663
N
GEO profiles
Genes and expression
63 811 486
D
Probe
Genes and expression
14 248 527
D
Gene
Genes and expression
11 290 372
C, N
UniGene
Genes and expression
5 831 ...
doi:10.1093/nar/gks1189
pmid:23193264
pmcid:PMC3531099
fatcat:hp2biq76anavbavtbbz4jcvwqm
Database resources of the National Center for Biotechnology Information
2007
Nucleic Acids Research
Preserved Fulltext
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The file type is application/pdf.
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other ...
Splign uses a version of the Needleman-Wunsch algorithm (47) that accounts for splice signals in combination with a compartmentalization algorithm to identify possible locations of genes and their copies ...
GENES AND EXPRESSION
Entrez Gene Entrez Gene (23) provides an interface to curated sequences and descriptive information about genes with links to NCBI's Map Viewer, Evidence Viewer, Model Maker, BLink ...
doi:10.1093/nar/gkl1031
pmid:17170002
pmcid:PMC1781113
fatcat:pj7gnwwlpnbmza7c4ae7yatega
Database Resources of the National Center for Biotechnology Information
2016
Nucleic Acids Research
Preserved Fulltext
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The file type is application/pdf.
In addition to maintaining the GenBank Õ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other ...
Splign uses a version of the Needleman-Wunsch algorithm (47) that accounts for splice signals in combination with a compartmentalization algorithm to identify possible locations of genes and their copies ...
GENES AND EXPRESSION
Entrez Gene Entrez Gene (23) provides an interface to curated sequences and descriptive information about genes with links to NCBI's Map Viewer, Evidence Viewer, Model Maker, BLink ...
doi:10.1093/nar/gkw1071
pmid:27899561
pmcid:PMC5210554
fatcat:itaqk5uwv5bv7gm7f55zunbcwq
Database resources of the National Center for Biotechnology Information
2007
Nucleic Acids Research
Preserved Fulltext
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The file type is application/pdf.
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and ...
RESOURCES FOR THE ANALYSIS OF PATTERNS OF GENE EXPRESSION Resources for the analysis of gene expression GENSAT. ...
Splign uses a version of the Needleman-Wunsch algorithm (31) that accounts for splice signals in combination with a compartmentization algorithm to identify possible locations of genes and their copies ...
doi:10.1093/nar/gkm1000
pmid:18045790
pmcid:PMC2238880
fatcat:geht7s3fgnguvnvfnga5kd2zmq
Towards a Holistic, Yet Gene-Centered Analysis of Gene Expression Profiles: A Case Study of Human Lung Cancers
2006
Journal of Biomedicine and Biotechnology
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We use a self-organizing maps-based software, the gene expression dynamics inspector (GEDI) to analyze gene expression profiles of various lung tumors. ...
Genome-wide gene expression profile studies encompass increasingly large number of samples, posing a challenge to their presentation and interpretation without losing the notion that each transcriptome ...
ACKNOWLEDGMENTS This work was supported by grants from the Air Force Office of Scientific Research (F49620-01-1-0564 to SH), NIH (CA55833 to DEI), and NASA (NN A04CC96G to DEI). ...
doi:10.1155/jbb/2006/69141
pmid:17489018
pmcid:PMC1698264
fatcat:av3k7piwsvhghn2omwlfieckj4
Database resources of the National Center for Biotechnology Information
2011
Nucleic Acids Research
Preserved Fulltext
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Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized datasets. ...
This work is written by (a) US Government employee(s) and is in the public domain in the US. ...
Probe The Probe database is a registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications including genotyping, SNP discovery, gene expression, gene silencing ...
doi:10.1093/nar/gkr1184
pmid:22140104
pmcid:PMC3245031
fatcat:zxmwupa435gfzcpusnv7oe3qnm
A Drosophila protein-interaction map centered on cell-cycle regulators
2004
Genome Biology
Preserved Fulltext
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The map includes a large number of novel interactions with potential biological significance. ...
In the most extensive screen to date, a Gal4-based two-hybrid system was used recently to detect over 20,000 interactions among Drosophila proteins. ...
We are particularly grateful to Mike McKenna for his help in the initial stages of this project. This work was supported by NIH grants HG01536 and GM62403. ...
doi:10.1186/gb-2004-5-12-r96
pmid:15575970
pmcid:PMC545799
fatcat:gbe3sn43jnaxvcukddckjeuesi
Database resources of the National Center for Biotechnology Information
2017
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. ...
Resources that were updated in the past year include the genome data viewer, a human genome resources page, Gene, virus variation, OSIRIS, and PubChem. ...
ACKNOWLEDGEMENTS Funding to pay the Open Access publication charges for this article was provided by the Intramural Research Program of the National Institutes of Health, National Library of Medicine. ...
doi:10.1093/nar/gkx1095
pmid:29140470
pmcid:PMC5753372
fatcat:v2wabu3mezcpnbvn7pnssppfdy
Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation
2017
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
We recently reported a click-chemistry based method for generating RNAseq libraries called 'Click-Seq'. ...
As a proof-of-principle, we utilized PAC-seq to explore the poly(A) landscape of both human and Drosophila cells in culture and observed outstanding overlap with existing poly(A) databases and also identified ...
We are indebted to Todd Albrecht, Mariano Garcia-Blanco, Shelton Bradrick and members of their lab for sharing lab space, helpful discussions and other research support. ...
doi:10.1093/nar/gkx286
pmid:28449108
pmcid:PMC5499544
fatcat:gufk7t472bfk3nvm6axljx5234
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
2019
Nucleic Acids Research
Preserved Fulltext
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PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated ...
Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze ...
PathoSystems Resource Integration Center (PATRIC) began as one of the original centers tasked with supporting comparative analysis of bacterial pathogens (1) (2) (3) . ...
doi:10.1093/nar/gkz943
pmid:31667520
pmcid:PMC7145515
fatcat:jmpq54pzkvhcfaxjzr25f2ypri
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