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CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models

Y. Chen, C. Lawless, C. S. Gillespie, J. Wu, R. J. Boys, D. J. Wilkinson
2010 Briefings in Bioinformatics  
For these reasons, we have developed the BASIS system for the simulation and storage of stochastic SBML models together with associated simulation results.  ...  Dynamic simulation modelling of complex biological processes forms the backbone of systems biology.  ...  BASIS and CaliBayes are integrated systems for the rapid simulation of cohorts of discrete stochastic realisations from SBML models, and for parameter inference for these models based on Bayesian sequential  ... 
doi:10.1093/bib/bbp072 pmid:20056731 fatcat:jn76b2tf5zfmvf2ys5hutaohpq

Editorial: Accelerating systems biology

T. Mazza
2010 Briefings in Bioinformatics  
With regard to this, 'CaliBayes' and 'BASIS' represent the efforts made by Wilkinson and co-authors to collect and integrate some tools for calibration, simulation and storage of biological simulation  ...  Such limitations affect all varieties of continuous, deterministic, discrete and stochastic models by undermining the applicability of simulation techniques and the analysis of biological models.  ... 
doi:10.1093/bib/bbq012 pmid:20478854 fatcat:drcrhcesx5dtrjnghe2l6rzn2q