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CRT and Fixed Patterns in Combinatorial Sequences [article]

Muhammad Asad Khan, Amir Ali Khan, Fauzan Mirza
2015 arXiv   pre-print
CRT is exploited to establish fixed patterns in LFSR sequences and underlying cyclic structures of finite fields.  ...  Novel approach of CRT based structural analysis of LFSR based combinatorial sequence is given both in time and frequency domain.  ...  In section 3, CRT based fixed patterns existing in the product sequences both in time and frequency domain have been deliberated upon.  ... 
arXiv:1504.01099v1 fatcat:djfyqosdezf2xkuuw2vt464tqm

CRT Based Spectral Convolution in Binary Fields [article]

Muhammad Asad Khan, Sajid Saleem, Amir A Khan
2019 arXiv   pre-print
sequences in frequency domain.  ...  In this paper, new results on convolution of spectral components in binary fields have been presented for combiatorial sequences.  ...  methodology in case of combinatorial sequences.  ... 
arXiv:1911.11437v1 fatcat:2tbnjgqqt5hnznzrg4ohffedju

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Joseph B. Sidowski
1978 Behavior Research Methods  
Combinatorial Methods to Count the Number of Serial Patterns (Submitted by C G. Wagner and S.  ...  ; (2) the number of "circular sequences" constructible from a fixed stock of elements as specified abouve; (3) the number of circular sequences, as above, having a fixed period (equivalence class cardinality  ... 
doi:10.3758/bf03205106 fatcat:lablljytx5b3taynabnl5vblde

Page 3476 of The Journal of Neuroscience Vol. 14, Issue 6 [page]

1994 The Journal of Neuroscience  
of each in situ hybridization pattern.  ...  Zebrafish embryos were fixed with parafor- maldehyde and in situ hybridization was performed on whole-mount or sectioned embryos using antisense riboprobes as previously described (Ekker et al., 1992a;  ... 

Random-Bit Optimal Uniform Sampling for Rooted Planar Trees with Given Sequence of Degrees and Applications [chapter]

Olivier Bodini, Julien David, Philippe Marchal
2016 Lecture Notes in Computer Science  
We then apply a natural process "simulate-guess-and-proof" to analyze the height of a random Motzkin in function of its frequency of unary nodes.  ...  In this paper, we redesign and simplify an algorithm due to Remy et al. for the generation of rooted planar trees that satisfies a given partition of degrees.  ...  First, one can construct the sequence (Sn, n ≥ 1) by Rémy's algorithm [Rem85] and it can be shown that Sn converges in a strong sense to a CRT [CHar] , in particular, height(Sn) √ cn → H where H has  ... 
doi:10.1007/978-3-319-29221-2_9 fatcat:cndfsscf4rcajb2ayry4ehidr4

Random-bit optimal uniform sampling for rooted planar trees with given sequence of degrees and Applications [article]

Olivier Bodini
2014 arXiv   pre-print
We then apply a natural process "simulate-guess-and-proof" to analyze the height of a random Motzkin in function of its frequency of unary nodes.  ...  In this paper, we redesign and simplify an algorithm due to Remy et al. for the generation of rooted planar trees that satisfies a given partition of degrees.  ...  First, one can construct the sequence (Sn, n ≥ 1) by Rémy's algorithm [Rem85] and it can be shown that Sn converges in a strong sense to a CRT [CHar] , in particular, height(Sn) √ cn → H where H has  ... 
arXiv:1401.4712v1 fatcat:cb66mtkgf5hz5oergur2gr47wi

Interspike intervals within retinal spike bursts combinatorially encode multiple stimulus features [article]

Toshiyuki Ishii, Toshihiko Hosoya
2020 bioRxiv   pre-print
When a burst has three spikes, the two intraburst ISIs combinatorially encode the amplitude and phase of the oscillatory sequence.  ...  In this study, we demonstrate that such combinatorial coding occurs for retinal bursts.  ...  Markus Meister for providing us with unpublished data and unstinting 483 encouragement. We also thank Takao K. Hensch, Shun-ichi Amari, Shin Yanagihara, Neal 484  ... 
doi:10.1101/2020.02.13.947283 fatcat:4hyhh6l67jbqbdfyjpt7sombcm

AthaMap web tools for the analysis and identification of co-regulated genes

C. Galuschka, M. Schindler, L. Bulow, R. Hehl
2007 Nucleic Acids Research  
Additional improvements of AthaMap include display of the gene structure in the sequence window and a significant data increase. AthaMap is freely available at  ...  Further tables show overviews with the number of individual transcription factor binding sites (TFBS) present and TFBS common to the whole set of genes.  ...  ACKNOWLEDGEMENTS The authors would like to thank Peter Huijser for providing binding sequences of SPL3 and SPL8.  ... 
doi:10.1093/nar/gkl1006 pmid:17148485 pmcid:PMC1761422 fatcat:jx7wjdghfnhjni5riqurtof57e

Pattern of p53 protein expression is predictive for survival in chemoradiotherapy-naive esophageal adenocarcinoma

Fiebo J.C. Ten, Lucia Suzuki, Lambert C.J. Dorssers, Winand N.M. Dinjens, David T.W. Jones, Daan Nieboer, Michael Doukas, J. Jan B. Van Lanschot, Bas P.L. Wijnhoven, Leendert H.J. Looijenga, Katharina Biermann
2017 OncoTarget  
Conclusion: P53 expression pattern is prognostic for DFS and OS in this historical cohort of CRT-naive EAC.  ...  P53 IHC is an informative readout for TP53 mutational status in EAC with either loss-or overexpression, but not in case of a heterogeneous p53 pattern.  ...  To further investigate the putative mechanism(s) involved, a combinatory investigation of expression pattern, mutational status of TP53 and a selection of other (relevant) genes, as well as high throughput  ... 
doi:10.18632/oncotarget.22021 pmid:29262626 pmcid:PMC5732792 fatcat:52da7exz5vedzllscbnappwvpy

New CRT sequence sets for a collision channel without feedback [article]

Yijin Zhang, Yuan-Hsun Lo, Kenneth W. Shum, Wing Shing Wong
2017 arXiv   pre-print
Protocol sequences are binary and periodic sequences used for deterministic multiple access in a collision channel without feedback.  ...  In addition, we derive an asymptotic lower bound on the minimum sequence period for w=M+1 if the sequence structure satisfies some technical conditions, called equi-difference, and prove the tightness  ...  Acknowledgements The authors would like to express their gratitude to the anonymous referees for their valuable comments and suggestions.  ... 
arXiv:1611.03012v3 fatcat:pr7pahocxzfajc44jzw5znykm4

Association between a Single-Nucleotide Polymorphism in the Promoter of the Human Interleukin-3 Gene and Rheumatoid Arthritis in Japanese Patients, and Maximum-Likelihood Estimation of Combinatorial Effect That Two Genetic Loci Have on Susceptibility to the Disease

Ryo Yamada, Toshihiro Tanaka, Motoko Unoki, Tatsuo Nagai, Tetsuji Sawada, Yozo Ohnishi, Tatsuhiko Tsunoda, Masao Yukioka, Akira Maeda, Kenji Suzuki, Hiroomi Tateishi, Takahiro Ochi (+2 others)
2001 American Journal of Human Genetics  
A case-control study was designed to investigate association between RA and a single-nucleotide polymorphism (SNP) in the IL-3 promoter region.  ...  The utility of combining the genotype data in this way to identify possible contributions of various genes to this disease is discussed.  ...  Acknowledgments We thank Toyokazu Seki, Koji Suematsu, Maiko Minami, Norihiro Kushida, Koji Jinno, Hiroto Kawakami, and Eri Tatsu for their contribution to the completion of our study.  ... 
doi:10.1086/318789 pmid:11179015 pmcid:PMC1274480 fatcat:z5pyqxtf3nciles2d5vm6srsr4

Changes in Gene Expression Patterns in the Tumor Microenvironment of Head and Neck Squamous Cell Carcinoma Under Chemoradiotherapy Depend on Response

Johannes Doescher, Adrian von Witzleben, Konstantinos Boukas, Stephanie E. Weissinger, Gareth J. Thomas, Simon Laban, Jaya Thomas, Thomas K. Hoffmann, Christian H. Ottensmeier
2022 Frontiers in Oncology  
CRT seems to lead to a loss of T cells in patients with incomplete response that needs to be reversed.  ...  Chemoradiotherapy (CRT) is a standard treatment for advanced head and neck squamous cell carcinoma (HNSCC).  ...  So far, final results have been published only for the JAVELIN Head and Neck 100 trial being the first completed study on a combinatory regimen of CRT and ICB.  ... 
doi:10.3389/fonc.2022.862694 pmid:35433484 pmcid:PMC9012140 fatcat:vxgde24obbbonhoxlwtytvrcbe

Scaling limit of graph classes through split decomposition [article]

Frédérique Bassino, Mathilde Bouvel, Valentin Féray, Lucas Gerin, Adeline Pierrot
2022 arXiv   pre-print
We prove that Aldous' Brownian CRT is the scaling limit, with respect to the Gromov–Prokhorov topology, of uniform random graphs in each of the three following families of graphs: distance-hereditary graphs  ...  , 2-connected distance-hereditary graphs and 3-leaf power graphs.  ...  We are also grateful to Éric Fusy for suggesting the argument given in Appendix B to justify that the class of DH graphs is subcritical.  ... 
arXiv:2207.12253v1 fatcat:sfexsmjfcnbilhkq2myoqmbqqa

Generic I0 at _ω [article]

Vincenzo Dimonte
2017 arXiv   pre-print
In this case _ω is Jónsson, and in a choiceless inner model many properties hold that are in contrast with PCF in ZFC.  ...  In this paper it is introduced a generic large cardinal akin to I0, and its consequences are analyzed in the case that _ω is such a generic large cardinal.  ...  of Discrete Mathematics and Geometry at Technische Universität Wien and the Department of Mathematical, Computer and Physical Sciences at University of Udine for their hospitality, and the Department  ... 
arXiv:1609.07970v3 fatcat:i37abnma4zhytlln3osg5slxbu

Endoplasmic reticulum stress enhances the antigen-specific T cell immune responses and therapeutic antitumor effects generated by therapeutic HPV vaccines

Sung Yong Lee, Jee Youn Oh, Tae Heung Kang, Hyun Seock Shin, Max A. Cheng, Emily Farmer, T.-C. Wu, Chien-Fu Hung
2019 Journal of Biomedical Science  
In this study, we utilize the CRT/E7 and further encode for an endoplasmic reticulum (ER) stress-inducing agent, 3-bromopyruvate (3-BrPA), in a preclinical model, by harnessing its potential to enhance  ...  In the past, we developed a therapeutic human papillomavirus (HPV) DNA vaccine that encodes for calreticulin (CRT) linked to the HPV16 E7 antigen (CRT/E7).  ...  These data suggest that a combinatorial treatment with 3-BrPA and the CRT/E7 DNA vaccine elicits synergistic antitumor effects in TC-1 tumor-bearing mice.  ... 
doi:10.1186/s12929-019-0536-7 pmid:31133013 pmcid:PMC6535840 fatcat:yh4qgw7jsfebfijiqiih64thhq
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