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RNA structure is difficult to predict in vivo due to interactions with enzymes and other molecules. ... Here we introduce CROSSalive, an algorithm to predict the single- and double-stranded regions of RNAs in vivo using predictions of protein interactions. ... of Economy and Competitiveness BFU2017-86970-P. ...doi:10.1093/bioinformatics/btz666 pmid:31504168 fatcat:mw62zkkjnrdofovcza4hf32tji
We introduce CROSSalive, an algorithm to predict RNA secondary structure content in vivo without sequence length limitations. ... The method also predicts the effect of N6 adenosine methylation (m6a) on RNA structure using predictions of protein interactions. ... ACKNOWLEDGEMENTS The authors thank Andrea Cerase and Alessio Colantoni. ...doi:10.1101/626085 fatcat:ddnwp3fvojfddiz44qwxqaoatq