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CRONOS: the cross-reference navigation server

Brigitte Waegele, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Corinna Montrone, H.-Werner Mewes, Andreas Ruepp
2008 Computer applications in the biosciences : CABIOS  
To overcome this, we developed CRONOS, a cross-reference server that contains entries from five mammalian organisms presented by major gene and protein information resources.  ...  Sequence similarity analysis of the mapped entries shows that the cross-references are highly accurate.  ...  METHODS Generation of cross-references Building of the cross-references is performed with data from five mammalian organisms (human, mouse, rat, cow and dog) using UniProt, RefSeq and Ensembl as primary  ... 
doi:10.1093/bioinformatics/btn590 pmid:19010804 pmcid:PMC2638938 fatcat:asaoknrz6nc2ndfcsltmyv7isi

Overview of biological database mapping services for interoperation between different 'omics' datasets

Shweta S Chavan, John D Shaughnessy, Ricky D Edmondson
2011 Human Genomics  
Many primary biological databases are dedicated to providing annotation for a specific type of biological molecule such as a clone, transcript, gene or protein, but often with limited cross-references.  ...  Thus, in order to map the two datasets, the identifier type from one dataset is required to be linked to another dataset, so preventing loss of critical information in downstream analysis.  ...  Acknowledgments The authors thank the Nancy and Stephen Grand  ... 
doi:10.1186/1479-7364-5-6-703 pmid:22155608 pmcid:PMC3525252 fatcat:7moz3ceylngtjd2arna3omk5km

Delivering the World: The Establishment of an International Data Service

Susan Noble, Keith Cole, Celia Russell, Jim Schumm, Nicholas Syrotiuk, Gindu Tampubolon
2005 IASSIST Quarterly  
Delivering the World: The Establishment of an International Data Service  ...  Data processing programs were written to re-format the raw data, to load the data and to publish the tables on the web server.  ...  Beyond 20/20 Web Data Server (WDS), a web-based data dissemination tool, was chosen as the software solution to provide our common user interface.  ... 
doi:10.29173/iq99 fatcat:ncjsoyoljfbddohmksvb23t5li

Network attacks: Taxonomy, tools and systems

N. Hoque, Monowar H. Bhuyan, R.C. Baishya, D.K. Bhattacharyya, J.K. Kalita
2014 Journal of Network and Computer Applications  
To prevent and defend networks from the occurrence of attacks, it is highly essential that we have a broad knowledge of existing tools and systems available in the public domain.  ...  Based on the behavior and possible impact or severity of damages, attacks are categorized into a number of distinct classes.  ...  The statistical processor maintains a reference model of typical network activities, compares reports from the event preprocessor with the reference model.  ... 
doi:10.1016/j.jnca.2013.08.001 fatcat:gfvxtbbki5c7xis2wjaj37izsm

Connecting Artificial Brains to Robots in a Comprehensive Simulation Framework: The Neurorobotics Platform

Egidio Falotico, Lorenzo Vannucci, Alessandro Ambrosano, Ugo Albanese, Stefan Ulbrich, Juan Camilo Vasquez Tieck, Georg Hinkel, Jacques Kaiser, Igor Peric, Oliver Denninger, Nino Cauli, Murat Kirtay (+20 others)
2017 Frontiers in Neurorobotics  
This work presents the architecture of the first release of the Neurorobotics Platform developed in subproject 10 "Neurorobotics" of the Human Brain Project (HBP). 1 At the current state, the Neurorobotics  ...  In order to simplify the workflow and reduce the level of the required programming skills, the platform provides editors for the specification of experimental sequences and conditions, environments, robots  ...  The second layer contains the REST server, also referred to as Backend, which receives requests from the ESV and forwards them to the appropriate components, which implements the requested service, mainly  ... 
doi:10.3389/fnbot.2017.00002 pmid:28179882 pmcid:PMC5263131 fatcat:kdnlspun5bbblengbbdoz736sq

Integrated Modeling of Tokamak Experiments with OMFIT

2013 Plasma and Fusion Research  
Within the OMFIT tree, data can be copied/referred from one node to another and tasks can call each other allowing for complex compound task to be built.  ...  High level Application Programmer Interfaces (APIs) enable users to execute their codes on remote servers and creation application-specific GUIs.  ...  or powerful servers (even if these are behind gateway hosts).  ... 
doi:10.1585/pfr.8.2403009 fatcat:ks3g6hqefbbxzkexbicawijxoi

La 'diet-etica' di Plutarco: l'autopromozione d'autore nei precetti igienici

Lieve Van Hoof
2010 Ploutarchos  
Thus, it seems to me that Ajax's hypotext in the Life of Cato strengthens the thesis of the existence of a crossed reference with the blurred hypotext of Antigone in the Life of Phocion.  ...  Philanthropia is indeed a reference word in the characterization of the Athenian.  ...  The responsibility for hosting and organizing the details of the meetings belongs to the national society hosting the meeting. 4.  ... 
doi:10.14195/0258-655x_8_12 fatcat:nly7anjqrzgixldaughvl7khym

Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis

Chen Chen, Jie Hou, John J Tanner, Jianlin Cheng
2020 International Journal of Molecular Sciences  
In this review, we discuss the current developments in the bioinformatics methods used in proteomics and how they facilitate the mechanistic understanding of biological processes.  ...  Recent advances in mass spectrometry (MS)-based proteomics have enabled tremendous progress in the understanding of cellular mechanisms, disease progression, and the relationship between genotype and phenotype  ...  CRONOS [137] A cross-reference navigation server. GNET2 [179] An R package for module inference of biological network.  ... 
doi:10.3390/ijms21082873 pmid:32326049 pmcid:PMC7216093 fatcat:5zbrkah4xvec3mq3ypal7cxfbu

Information Operations Recognition: from Nonlinear Analysis to Decision-making [article]

Aleksandr G. Dodonov, Dmitry V. Lande, Vitaliy V. Tsyganok, Oleh V. Andriichuk, Sergii V. Kadenko, Anastasia N. Graivoronskaya
2019 arXiv   pre-print
The book is dedicated to the issues of information operations recognition based on analysis of information space, particularly, web-resources, social networks, and blogs.  ...  The book is addressed to a broad circle of specialists from information technology and security domains.  ...  According to Netcraft Web Server Survey (, presently, the number of web-servers exceeds a billion ( Fig. 2.4) .  ... 
arXiv:1901.10876v2 fatcat:la2d5dgya5ft7nuispo7es3adq

Cartography in Croatia 2007–2011 National Report to the ICA 15th General Assembly, Paris, 2011

Dražen Tutić, Miljenko Lapaine
2011 Kartografija i Geoinformacije  
The bearer of those activities in Croatia is the Croatian Cartographic Society.  ...  The State Geodetic Administration recognized the value and importance of those activities and has been financially supporting the work on national report for several years.  ...  , MSc The authors would like to thank the State Geodetic Administration for financial support by means of which the work on this report has been successfully finished.  ... 
doaj:e1731eacf2124db5bd99f6cb2d897779 fatcat:5r66frsk7ramros7jqdljfdyz4

European Values Study (EVS) 2017: Methodological Guidelines

2020 EUROLAB annual report  
The EVS 2017 Methodological Guidelines comprise the recommendations and standards designed for the lifecycle phases of the EVS wave 2017 and agreed with the participating countries.  ...  The project would not have been possible without the National Program Directors in the EVS member countries and their local teams.  ...  organizations in the EVS member countries.  ... 
doi:10.21241/ssoar.70110 fatcat:zyt3vnq2o5gi3jfyh5ymmi7p3u

D7.9: Hardware developments V

Alan O'Cais, Christopher Werner, Simon Wong, Padraig Ó Conbhuí, Jony Castagna, Godehard Sutmann
2020 Zenodo  
platforms; and, - detailed output from direct face-to-face session between the project endusers, developers and hardware vendors.  ...  Update on "Hardware Developments IV" (Deliverable 7.7: which covers: - Report on hardware developments that will affect the scientific areas of interest to E-CAM  ...  which uses Fortran 2018 as it's reference for implementation.  ... 
doi:10.5281/zenodo.3931510 fatcat:kelxr6ap5vfunpjisfpwiauwue

Tackling Climate Change with Machine Learning [article]

David Rolnick, Priya L. Donti, Lynn H. Kaack, Kelly Kochanski, Alexandre Lacoste, Kris Sankaran, Andrew Slavin Ross, Nikola Milojevic-Dupont, Natasha Jaques, Anna Waldman-Brown, Alexandra Luccioni, Tegan Maharaj, Evan D. Sherwin, S. Karthik Mukkavilli (+6 others)
2019 arXiv   pre-print
We call on the machine learning community to join the global effort against climate change.  ...  Climate change is one of the greatest challenges facing humanity, and we, as machine learning experts, may wonder how we can help.  ...  The authors gratefully acknowledge support from National Science Foundation grant 1803547, the Center for Climate and Energy Decision Making through a cooperative agreement between the National Science  ... 
arXiv:1906.05433v2 fatcat:ykmqsivkbfcazaz3wl5f7srula

Competitive Moves: The Influence of Industry Context and Individual Cognitive Factors

Lee J. Zane, William Kline
2017 Entrepreneurship Research Journal  
We argue that the speed and intensity with which entrepreneurs conduct competitive activities are contingent on both their perceptions of the environment and their level of certain cognitive biases.  ...  While real options logic has been used to explain market entry and exit decisions under uncertainty, few have tied this logic to the characteristics of ventures' competitive moves.  ...  The study finds no correlation between attraction to SMEs and the entire job attributes except benefits.  ... 
doi:10.1515/erj-2015-0037 fatcat:7tsosyzt6ffuhjmikxxmsmyc7i

Board of Directors of OGF

Qiang Fu, Academia Kaindl, Yaser Chaaban, Darryl Davis, Leonardo Dagui De Oliveira, Lars Fredrik, Høimyr Edvardsen, Simon Fong, Joao Luis, Garcia Rosa, Jürgen Graf, Abdelhakim Hafid (+20 others)
Spain Wolfgang Gentzsch   unpublished
We take here the opportunity to warmly thank all the members of the COGNITIVE 2010 Technical Program Committee, as well as the numerous reviewers.  ...  We are convinced that the participants found the event useful and communications very open. We also hope the attendees enjoyed the beautiful surroundings of Lisbon,  ...  ACKNOWLEDGMENT The authors would like to thank the Portuguese Science Foundation, FCT, for the funding to IDMEC through the Associated Laboratory in Energy, Transports, Aeronautics and Space (LAETA).  ... 
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