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One file to share them all: Using the COMBINE Archive and the OMEX format to share all information about a modeling project [article]

Frank T. Bergmann, Richard Adams, Stuart Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro (+4 others)
2014 arXiv   pre-print
Conclusions: The COMBINE Archive facilitates the reproduction of modeling and simulation experiments in biology by embedding all the relevant information in one file.  ...  Together with the use of other standard formats from the Computational Modeling in Biology Network (COMBINE), OMEX is the basis of the COMBINE Archive, a single file that supports the exchange of all the  ...  The COMBINE Archive permits researchers to share all the documents describing a model and associated simulations in a single file.  ... 
arXiv:1407.4992v2 fatcat:x2pn25x6rvdznfzgc7hlhip7aq

COMBINE Archive Specification Version 1

Frank T Bergmann, Nicolas Rodriguez, Nicolas Le Novère
2015 Journal of Integrative Bioinformatics  
The COMBINE Archive facilitates the reproduction of modeling and simulation experiments in biology by embedding all the relevant information in one file.  ...  The manifest is an XML file listing all files included in the archive and their type. The metadata file provides additional information about the archive and its content.  ...  The COMBINE Archive facilitates the reproduction of modeling and simulation experiments in biology by embedding all the relevant information in one file.  ... 
doi:10.2390/biecoll-jib-2015-261 pmid:26528559 fatcat:hpqz5ix5enenljdh2mywiym2wu

COMBINE Archive Specification Version 1

Frank T. Bergmann, Nicolas Rodriguez, Nicolas Le Novère
2015 Journal of Integrative Bioinformatics  
The COMBINE Archive facilitates the reproduction of modeling and simulation experiments in biology by embedding all the relevant information in one file.  ...  The manifest is an XML file listing all files included in the archive and their type. The metadata file provides additional information about the archive and its content.  ...  The COMBINE Archive facilitates the reproduction of modeling and simulation experiments in biology by embedding all the relevant information in one file.  ... 
doi:10.1515/jib-2015-261 fatcat:735lll2xlfa5zbvm7eoruv2n6y

Combining Archival and Records Management Terminology

Everett Alldredge
1970 The American Archivist  
How far have I strayed from my theme of the problem of combining archival and records management terminology? I trust not at all, for I have tried to show: 1.  ...  I asked them on their way to the meeting to pass a large basement room in a nearby hospital and tell me what it contained.  ... 
doi:10.17723/aarc.33.1.8232781374221585 fatcat:nouuuewrhre5ramlidrd4zd5sq

Data Archiving

Michael C. Whitlock, Mark A. McPeek, Mark D. Rausher, Loren Rieseberg, Allen J. Moore
2010 American Naturalist  
Spaces and capitalization are handled differently on some operating systems and in particular on the internet, so some headaches are avoided by leaving them out in all the file names.  ...  Later when combining files from multiple computers and sources there is no ambiguity about where the files should go, and it's a lot easier to look this data up when it's all together down the road.  ... 
doi:10.1086/650340 pmid:20073990 fatcat:4qptkqtgxnhophazh747dcln2m

On edited archives and archived editions

Wout Dillen
2019 International Journal of Digital Humanities  
To conclude, the essay takes the discussion further by offering a broader reflection on the difficulties of providing a 'definitive' archival base transcription of especially handwritten materials, questioning  ...  Building on a longstanding terminological discussion in the field of textual scholarship, this essay explores the archival and editorial potential of the digital scholarly edition.  ...  to agree on where to place the addition in the text file.  ... 
doi:10.1007/s42803-019-00018-4 fatcat:gnfav2p3znaexnmpvq4vkr2uja

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

Frank T Bergmann, Richard Adams, Stuart Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K Miller, David P Nickerson, Brett G Olivier, Nicolas Rodriguez (+6 others)
2014 BMC Bioinformatics  
Conclusions: The COMBINE Archive facilitates the reproduction of modeling and simulation experiments in biology by embedding all the relevant information in one file.  ...  Together with the use of other standard formats from the Computational Modeling in Biology Network (COMBINE), OMEX is the basis of the COMBINE Archive, a single file that supports the exchange of all the  ...  The COMBINE Archive permits researchers to share all the documents describing a model and associated simulations in a single file.  ... 
doi:10.1186/s12859-014-0369-z pmid:25494900 pmcid:PMC4272562 fatcat:3dqofrgqz5f2dlivtikejgyonu

Digital Archiving [chapter]

Patricia Galloway
2009 Encyclopedia of Library and Information Sciences, Third Edition  
ABSTRACT Since 2001 the author has been teaching a graduate course in digital archiving at the School of Information, University of Texas at Austin, as part of a suite of courses on digital archives and  ...  This essay outlines the development of this course over time in order to describe the emergence of an approach to digital ar chiving teaching through active and reflective digital archiving practice, in  ...  All physical media have some kind of file system imposed on them for the arrangement of the files, so for the medium to be read after copying or clon ing also requires the availability in some form of  ... 
doi:10.1081/e-elis3-120044332 fatcat:zbxpufol2jeqjgxopianzlp4vi

The Lord of the Shares: Combining Attribute-Based Encryption and Searchable Encryption for Flexible Data Sharing [article]

Antonis Michalas
2018 IACR Cryptology ePrint Archive  
Secure cloud storage is considered one of the most important issues that both businesses and end-users are considering before moving their private data to the cloud.  ...  In this paper, we propose a protocol that combines both SSE and ABE in a way that the main advantages of each scheme are used.  ...  User u i should be able to securely share a file d i j with another user based on a certain policy; 3.  ... 
dblp:journals/iacr/Michalas18 fatcat:nh2pd26jtbh4diuc7ellpqu2me

State Archives [chapter]

David B. Gracy, Adam D. Knowles
2009 Encyclopedia of Library and Information Sciences, Third Edition  
Without such a policy, the collections would not have been relinquished to them for research at all.  ...  he has given and the work that has been done on them.  ... 
doi:10.1081/e-elis3-120044426 fatcat:mjzxznjhibe3hj74dz5w3qhxmm

Open Archive of Hate: Terrorism and Violent Extremism on Internet Archive

Gabriel Weimann
2022 Zenodo  
and organizations who use this archive for sharing and promoting such contents.  ...  While the few studies on hate speech and violent content on Internet Archive focused only on a certain type of content or a specific group, this study attempts to reveal a wide range of contents, groups  ...  All of the are archived and open to all on Internet Archive.  ... 
doi:10.5281/zenodo.6945870 fatcat:5mng4c3qdne6bpxx3m4b5ks5uq

Technology of Secure File Archiving in the Uniformly Random Distributed Archive Scheme

Ahmed Tallat, Hiroshi Yasuda, Kilho Shin
2013 Journal of Information Security  
As the result, users only need to access at least k storages to recover original file, whereas stolen data from k − 1 storages cannot cover original file.  ...  Thus, archived files are nothing but sequences of a large number of fixed length fragments.  ...  can be dedicated to servers based on their needs without buying extra storage to each of them individually.  ... 
doi:10.4236/jis.2013.41006 fatcat:gms2vfiohbf3jay3rmmusoj37a

Microservices in Audiovisual Archives

Dave Rice, Annie Schweikert
2019 International Association of Sound and Audiovisual Archives (IASA) Journal  
Since the document intends to focus on archival routines for audiovisual content, an introduction to ffmpeg can be helpful.  ...  This document describes and examines strategies for designing lightweight microservice environments for the processing of digital, file-based, audiovisual data within an archive.  ...  Linking Microservices Together In some cases, one or more microservices may be combined into one, larger microservice, in order to create a combination of tasks that always take place together.  ... 
doi:10.35320/ij.v0i50.70 fatcat:6o76prt2knaipeomcaqbjxtwzq

Archives and Dinosaurs

Eric Tanenbaum
1986 IASSIST Quarterly  
Archives and Dinosaurs  ...  However, almost all archives have computer softy/are that allows them to read and write tapes written in all formats used in their user constituency.  ...  First, in almost all cases, it requires that information be stored as sequential files.  ... 
doi:10.29173/iq525 fatcat:cg7sqii7mne37odefecrl6wlba

The Gaia Archive

Alcione Mora, Juan González-Núñez, Deborah Baines, Javier Durán, Raúl Gutiérrez-Sanchéz, Elena Racero, Jesús Salgado, Juan Carlos Segovia
2017 Proceedings of the International Astronomical Union  
The system architecture, based on Virtual Observatory standards, is also presented, together with the extensions that allow e.g. authenticated access, persistent uploads and table sharing.  ...  The Archive is the main Gaia data distribution hub. The contents of DR1 are briefly reviewed and the data structures discussed.  ...  Those tables can be used in queries exactly as if they were public data, but are only visible to their owner and those users with whom he decides to share them. This feature is very powerful.  ... 
doi:10.1017/s1743921317006548 fatcat:5fexo4wbebgubjzkfgvuupcmq4
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