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CLEF eHealth Evaluation Lab 2020 [chapter]

Hanna Suominen, Liadh Kelly, Lorraine Goeuriot, Martin Krallinger
2020 Lecture Notes in Computer Science  
CLEF ehealth 2019 evaluation lab Kelly, L.; Goeuriot, L.; Suominen, H.; Neves, M.; Kanoulas, E.; Spijker, R.; Azzopardi, L.; Li, D.; Jimmy; Palotti, J.; Zuccon, G.  ...  The CLEF eHealth 2019 evaluation lab is supported in part by the CLEF Initiative, Data61/CSIRO, a Google Faculty Research Award, and ARC DECRA grant DE180101579.  ...  We gratefully acknowledge the people involved in the CLEF eHealth labs as participants or organizers. We also acknowledge the many organizations that have supported CLEF eHealth labs since 2012.  ... 
doi:10.1007/978-3-030-45442-5_76 fatcat:ugsktnraazh4dl74jmyspc4wfu

IAM at CLEF eHealth 2020: Concept Annotation in Spanish Electronic Health Records

Sébastien Cossin, Vianney Jouhet
2020 Conference and Labs of the Evaluation Forum  
In this paper, we describe the approach and the results of our participation in task 1 (multilingual information extraction) of the CLEF eHealth 2020 challenge.  ...  In this paper, we describe our approach and present the results for our participation in the task 1 (multilingual information extraction) of the CLEF eHealth 2020 challenge [2, 6] .  ...  For many years CLEF eHealth has proposed challenges to solve several real-world problems of information extraction in free-text data.  ... 
dblp:conf/clef/CossinJ20 fatcat:p7bxuzukp5ev3ombvo53avap6q

FLE at CLEF eHealth 2020: Text Mining and Semantic Knowledge for Automated Clinical Encoding

Nuria García-Santa, Kendrick Cetina
2020 Conference and Labs of the Evaluation Forum  
The objective of the tasks of the 2020 CLEF eHealth for Multilingual Information Extraction is to develop solutions to automatically annotate Spanish clinical texts with codes from the International Classification  ...  And finally, we present and discuss the CLEF eHealth performance evaluation of our results.  ...  Material and Methods Problem definition Current CLEF eHealth 2020 task deals with multilingual Information Extraction (IE).  ... 
dblp:conf/clef/Garcia-SantaC20 fatcat:7byceqsb4jdgbdi67knw3gvz4i

Classifying Clinical Case Studies with ICD-10 atCodiesp CLEF eHealth 2020 Task 1-Diagnostics

Paula Queipo-Álvarez, Israel González-Carrasco
2020 Conference and Labs of the Evaluation Forum  
In this paper, the authors describe the approach and results for the participation in Task 1 (multilingual information extraction) of CLEF eHealth 2020.  ...  Conclusions This working note presents our contribution to Task 1 of CLEF eHealth competition 2020 [7] .  ...  Introduction In this paper, the authors describe the participation of Human Language and Accessibility Technologies Group (HULAT) at CodiEsp CLEF eHealth 2020, in particular to Task 1: Multilingual Information  ... 
dblp:conf/clef/Queipo-AlvarezG20 fatcat:lklbtvictncvhljlerw7fy6iai

MEDIA team: CLEF-2020 eHealth Task 1: Multilingual Information Extraction - CodiEsp

Iker de la Iglesia, Mikel Martínez-Puente, Alex Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola
2020 Conference and Labs of the Evaluation Forum  
The aim of this paper is to present our approach (MEDIA) on the CLEF-2020 eHealth Task 1.  ...  The task consists in automatically assigning ICD10 codes (CIE-10, in Spanish) to clinical case documents, evaluating the prediction against manually generated ICD10 codifications.  ...  CodiEsp: Clinical Case Coding in Spanish Shared Task (eHealth CLEF 2020 -Multilingual Information Extraction) [1] is devoted to the automatic coding of clinical cases in Spanish, as part of the CLEF  ... 
dblp:conf/clef/IglesiaMPMAG20 fatcat:wvbks2jp2nbm3eqihrtboluh5u

TeamX at CLEF eHealth 2020: ICD Coding with N-gram Encoder and Code-filtering Strategy

Yuki Tagawa, Norihisa Nakano, Ryota Ozaki, Tomoki Taniguchi, Tomoko Ohkuma
2020 Conference and Labs of the Evaluation Forum  
In this study, we work on an automatic ICD10-CM and ICD10-PCS coding to Spanish clinical cases at CLEF eHealth 2020 Task 1.  ...  As a type of multilingual information extraction, the CLEF eHealth community has been organizing shared tasks on ICD  ...  We found the following difficulties in the CLEF eHealth 2020 ICD coding task.  ... 
dblp:conf/clef/TagawaNOTO20 fatcat:qbh2v6wdcbcwnpy7miawbkulru

An Overview on Evaluation Labs and Open Issues in Health-related Credible Information Retrieval

Rishabh Upadhyay, Gabriella Pasi, Marco Viviani
2021 Italian Information Retrieval Workshop  
To encourage research in this field, a couple of evaluation labs have been recently set up to provide large test collections, baselines, and evaluation metrics to interested researchers.  ...  The purpose of this article is to provide an overview of such evaluation labs, discussing their characteristics and open issues.  ...  Acknowledgments This work is supported by the EU Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie Grant Agreement No 860721 -DoSSIER: "Domain Specific Systems for Information  ... 
dblp:conf/iir/UpadhyayPV21 fatcat:f7kqbdxe4zcwpjitjs55gcgpzy

Text Augmentation Techniques for Clinical Case Classification

Anaïs Ollagnier, Hywel T. P. Williams
2020 Conference and Labs of the Evaluation Forum  
In this paper we present our contribution at CodiEsp: Clinical Case Coding Task (CLEF eHealth 2020) on the automatic assignment of clinical coding (diagnosis and procedures) to clinical cases in Spanish  ...  Coding accuracy is an ongoing challenge which has led to the organization of challenges and shared tasks to evaluate AI-enhanced, computer-assisted coding systems.  ...  The CLEF eHealth 2 [7] , established in 2012 as part of the Conference and Labs of the Evaluation Forum (CLEF), is a workshop offering evaluation labs (datasets, evaluation frameworks, and events) in  ... 
dblp:conf/clef/OllagnierW20 fatcat:fors6lrbsrcbfpyd3nrfneuhvy

Overview of the CLEF eHealth Evaluation Lab 2015 [chapter]

Lorraine Goeuriot, Liadh Kelly, Hanna Suominen, Leif Hanlen, Aurélie Névéol, Cyril Grouin, João Palotti, Guido Zuccon
2015 Lecture Notes in Computer Science  
In this paper we provide an overview of the fourth edition of the CLEF eHealth evaluation lab.  ...  CLEF eHealth 2016 continues our evaluation resource building efforts around the easing and support of patients, their next-of-kins and clinical staff in understanding, accessing and authoring eHealth information  ...  Acknowledgements The CLEF eHealth 2016 evaluation lab has been supported in part by (in alphabetical order) the ANR, the French National Research Agency, under grant CABeRneT ANR-13-JS02-0009-01; CLEF  ... 
doi:10.1007/978-3-319-24027-5_44 fatcat:m2jdo6wsrnc7vpxnvo4bgto52m

LSI_UNED at CLEF eHealth2021: Exploring the effects of transfer learning in negation detection and entity recognition in clinical texts

Hermenegildo Fabregat, Andrés Duque, Lourdes Araujo, Juan Martínez-Romo
2021 Conference and Labs of the Evaluation Forum  
This paper describes the approach presented by the LSI_UNED team in the Multilingual Information Extraction task (SpRadIE) of CLEF eHealth 2021.  ...  In this context, the eHealth Evaluation Lab conducted at the Conference and Labs of the Evaluation Forum (CLEF) 2021 [1] is a great opportunity for testing systems designed for solving these kind of  ...  Many different tasks related to biomedical NER have been proposed in evaluation campaigns such as CLEF eHealth 2015 [12] , TASS eHealth-KD 2018 [13] or IberLEF eHealth-KD 2019 [14] and 2020 [15]  ... 
dblp:conf/clef/FabregatDAM21 fatcat:6pdhmdq6brezbkaoyp2oxlzavy

The IR Task at the CLEF eHealth Evaluation Lab 2016: User-centred Health Information Retrieval

Guido Zuccon, João R. M. Palotti, Lorraine Goeuriot, Liadh Kelly, Mihai Lupu, Pavel Pecina, Henning Müller, Julie Budaher, Anthony Deacon
2016 Conference and Labs of the Evaluation Forum  
This paper details the collection, systems and evaluation methods used in the IR Task of the CLEF 2016 eHealth Evaluation Lab.  ...  As part of the evaluation exercise, we gathered 300 queries users posed with respect to 50 search task scenarios.  ...  Acknowledgments This work has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 644753 (KConnect), and from the Austrian Science Fund (FWF  ... 
dblp:conf/clef/ZucconPGKLPMBD16 fatcat:tc5dcftzyje6fcd2ioykmretqi

CLEF 15th Birthday

Nicola Ferro
2014 SIGIR Forum  
2014 marks the 15 th birthday for CLEF, an evaluation campaign activity which has applied the Cranfield evaluation paradigm to the testing of multilingual and multimodal information access systems in Europe  ...  This paper provides a summary of the motivations which led to the establishment of CLEF, and a description of how it has evolved over the years, the major achievements, and what we see as the next challenges  ...  Acknowledgements CLEF would not be possible without all the effort, enthusiasm, and passion of its community: lab organizers, lab participants, and attendees are the core and the real success of CLEF.  ... 
doi:10.1145/2701583.2701587 fatcat:exd4r3qlznhqhm77efsyof5gee

SandiDoc at CLEF 2020 - Consumer Health Search : AdHoc IR Task

Sandaru Seneviratne, Eleni Daskalaki, Md. Zakir Hossain, Artem Lenskiy
2020 Conference and Labs of the Evaluation Forum  
CLEF 2020 eHealth task on consumer health search adhoc IR addresses the need of improved information retrieval techniques in the health domain to provide relevant information to users.  ...  This paper presents our work in CLEF eHealth 2020 consumer health search, on term frequency-inverse document frequency and word vector representation-based techniques adopted in the adhoc IR task.  ...  CLEF eHealth 2020 [4] task 2 on consumer health search [3] consists of two sub tasks; adhoc IR and spoken query retrieval.  ... 
dblp:conf/clef/SeneviratneDHL20 fatcat:5zbrm2bsh5c3ppnzbs2zwkhjsa

Generating Query Suggestions for Cross-language and Cross-terminology Health Information Retrieval [chapter]

Paulo Miguel Santos, Carla Teixeira Lopes
2020 Lecture Notes in Computer Science  
The evaluation was done with an English and a Portuguese test collection, considering as baseline the suggestions initially provided by Health Suggestions.  ...  This work proposes, evaluates, and compares further strategies for generating suggestions based on the initial consumer query, using multi-concept recognition and the Unified Medical Language System (UMLS  ...  The English collection is provided by the Consumer Health Search Task in the 2018 edition of the CLEF eHealth Lab 2 .  ... 
doi:10.1007/978-3-030-45442-5_43 fatcat:xgzji7kj4vb5hn2d3iwmpaxbn4

CLEF eHealth Evaluation Lab 2015, Task 2: Retrieving Information About Medical Symptoms

João R. M. Palotti, Guido Zuccon, Lorraine Goeuriot, Liadh Kelly, Allan Hanbury, Gareth J. F. Jones, Mihai Lupu, Pavel Pecina
2015 Conference and Labs of the Evaluation Forum  
This paper details methods, results and analysis of the CLEF 2015 eHealth Evaluation Lab, Task 2.  ...  As part of this evaluation exercise, 66 query topics were created by potential users based on images and videos of conditions.  ...  Acknowledgement This task has been supported in part by the European Union Seventh Framework Programme (FP7/2007-2013) under grant agreement n o 257528 (KHRES-MOI), by Horizon 2020 program (H2020-ICT-2014  ... 
dblp:conf/clef/PalottiZGKHJLP15 fatcat:ho67yjwqbzf5lpnndmwkioz3bi
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