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Benchmarking Clinical Decision Support Search [article]

Vincent Nguyen, Sarvnaz Karimi, Sara Falamaki, Cecile Paris
<span title="2018-01-29">2018</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
From 2014 to 2016, TREC conducted a clinical decision support track, wherein participants were tasked with finding articles relevant to clinical questions posed by physicians.  ...  Finding relevant literature underpins the practice of evidence-based medicine.  ...  We are also grateful for the financial support from Decision Sciences Program at CSIRO, as well as constructive comments and feedback from our colleagues in Language and Social Computing Team, especially  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1801.09322v1">arXiv:1801.09322v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/atlu276fcjhd5el4l67qota644">fatcat:atlu276fcjhd5el4l67qota644</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200929175856/https://arxiv.org/pdf/1801.09322v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ae/5d/ae5d0952b8fb2e6b21e9b7f9836b98f831e2da4f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1801.09322v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Simple but Effective Knowledge-Based Query Reformulations for Precision Medicine Retrieval

Stefano Marchesin, Giorgio Maria Di Nunzio, Maristella Agosti
<span title="2021-09-29">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dmr4kpn2yreovpdxpdiqtjcrnu" style="color: black;">Information</a> </i> &nbsp;
The experimental analyses on different test collections for Precision Medicine IR show the effectiveness of the developed techniques.  ...  Preliminary Study: TREC Precision Medicine 2018 In this section, we describe the preliminary study we performed on the TREC PM 2018 Clinical Trials Track.  ...  Validation Study: TREC Precision Medicine 2019 Given the outcomes of the in-depth analysis of query reformulations, we conducted a validation study on the TREC PM 2019 Track.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/info12100402">doi:10.3390/info12100402</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/b2tiwkuyf5hzrfkst2oesitn74">fatcat:b2tiwkuyf5hzrfkst2oesitn74</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220121113239/https://mdpi-res.com/d_attachment/information/information-12-00402/article_deploy/information-12-00402.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1e/16/1e1620a071a19aba58f0de84afed368a5186737b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/info12100402"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

An improved BM25 algorithm for clinical decision support in Precision Medicine based on co-word analysis and Cuckoo Search

Zicheng Zhang
<span title="2021-03-02">2021</span> <i title="Springer (Biomed Central Ltd.)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/bnylrk2y7bfnrn7u2f2vjkx7ta" style="color: black;">BMC Medical Informatics and Decision Making</a> </i> &nbsp;
The data used in this manuscript is sourced from medical articles presented in Text Retrieval Conference (TREC): Clinical Decision Support (CDS) Tracks of 2017, 2018, and 2019 in Precision Medicine.  ...  Retrieving gene and disease information from a vast collection of biomedical abstracts to provide doctors with clinical decision support is one of the important research directions of Precision Medicine  ...  Medicine indicators Fig. 10 10 Comparison of 2018 TREC Precision Medicine indicators Fig. 11 11 Comparison of 2019 TREC Precision Medicine indicators Abbreviations TREC: Text Retrieval Conference  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12911-021-01454-5">doi:10.1186/s12911-021-01454-5</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33653325">pmid:33653325</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/732bmckscbhytipbmfw6riqhfy">fatcat:732bmckscbhytipbmfw6riqhfy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210421213508/https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-021-01454-5.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0d/3b/0d3b27ae700dd4283f58ff0670dd91fd4b177bc4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12911-021-01454-5"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

Overview of the TREC 2019 Precision Medicine Track

Kirk Roberts, Dina Demner-Fushman, Ellen M Voorhees, William R Hersh, Steven Bedrick, Alexander J Lazar, Shubham Pant, Funda Meric-Bernstam
<span title="">2019</span>
National Library of Medicine, NIH. Finally, the organizers are grateful to the National Institute of Standards and Technology (NIST) for funding the assessment process.  ...  This started with the TREC 2017 Precision Medicine track, continued in 2018, and further continues with the 2019 track described here.  ...  Then, the TREC Precision Medicine track grew from the CDS track, starting in 2017 (Roberts et al., 2017) and continuing in 2018 (Roberts et al., 2018) , focusing on a more narrow problem domain (precision  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34849512">pmid:34849512</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8629155/">pmcid:PMC8629155</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ww5n7bvby5c25nenze6e5tz5tq">fatcat:ww5n7bvby5c25nenze6e5tz5tq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220116204437/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC8629155&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/da/9c/da9cf62b5ab8c25e383a7acea9ce2b5f93b9e3e3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8629155" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>