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Benchmarking Clinical Decision Support Search [article]

Vincent Nguyen, Sarvnaz Karimi, Sara Falamaki, Cecile Paris
2018 arXiv   pre-print
From 2014 to 2016, TREC conducted a clinical decision support track, wherein participants were tasked with finding articles relevant to clinical questions posed by physicians.  ...  Finding relevant literature underpins the practice of evidence-based medicine.  ...  We are also grateful for the financial support from Decision Sciences Program at CSIRO, as well as constructive comments and feedback from our colleagues in Language and Social Computing Team, especially  ... 
arXiv:1801.09322v1 fatcat:atlu276fcjhd5el4l67qota644

Simple but Effective Knowledge-Based Query Reformulations for Precision Medicine Retrieval

Stefano Marchesin, Giorgio Maria Di Nunzio, Maristella Agosti
2021 Information  
The experimental analyses on different test collections for Precision Medicine IR show the effectiveness of the developed techniques.  ...  Preliminary Study: TREC Precision Medicine 2018 In this section, we describe the preliminary study we performed on the TREC PM 2018 Clinical Trials Track.  ...  Validation Study: TREC Precision Medicine 2019 Given the outcomes of the in-depth analysis of query reformulations, we conducted a validation study on the TREC PM 2019 Track.  ... 
doi:10.3390/info12100402 fatcat:b2tiwkuyf5hzrfkst2oesitn74

An improved BM25 algorithm for clinical decision support in Precision Medicine based on co-word analysis and Cuckoo Search

Zicheng Zhang
2021 BMC Medical Informatics and Decision Making  
The data used in this manuscript is sourced from medical articles presented in Text Retrieval Conference (TREC): Clinical Decision Support (CDS) Tracks of 2017, 2018, and 2019 in Precision Medicine.  ...  Retrieving gene and disease information from a vast collection of biomedical abstracts to provide doctors with clinical decision support is one of the important research directions of Precision Medicine  ...  Fig. 7 7 2018 TREC Precision Medicine relevance in co-word biomedical articles Fig. 8 8 2019 TREC Precision Medicine relevance in co-word biomedical articles Fig. 9 9 Comparison of 2017 TREC Precision  ... 
doi:10.1186/s12911-021-01454-5 pmid:33653325 fatcat:732bmckscbhytipbmfw6riqhfy

Overview of the TREC 2019 Precision Medicine Track

Kirk Roberts, Dina Demner-Fushman, Ellen M Voorhees, William R Hersh, Steven Bedrick, Alexander J Lazar, Shubham Pant, Funda Meric-Bernstam
National Library of Medicine, NIH. Finally, the organizers are grateful to the National Institute of Standards and Technology (NIST) for funding the assessment process.  ...  This started with the TREC 2017 Precision Medicine track, continued in 2018, and further continues with the 2019 track described here.  ...  Then, the TREC Precision Medicine track grew from the CDS track, starting in 2017 (Roberts et al., 2017) and continuing in 2018 (Roberts et al., 2018) , focusing on a more narrow problem domain (precision  ... 
pmid:34849512 pmcid:PMC8629155 fatcat:ww5n7bvby5c25nenze6e5tz5tq