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CASIMIR & ENFIN

John Hancock, John Hancock
2011 Nature Precedings  
CASIMIR (FP6: Coordination And Sustainability of International Mouse Informatics Resources)To develop a shared approach between traditionally dry and traditionally wet researchers in the area of systemslevel  ...  Ainali  Pascal Kahlem  Ewan Birney All participants in CASIMIR and CASIMIRENFIN workshops • Addressed the need for scientific integration of mouse genetics and other databases relevant to functional  ... 
doi:10.1038/npre.2011.6158.1 fatcat:zg7qycg4pfbwxlhyliznuduod4

CASIMIR & ENFIN

John Hancock, John Hancock
2011 Nature Precedings  
CASIMIR (FP6: Coordination And Sustainability of International Mouse Informatics Resources)To develop a shared approach between traditionally dry and traditionally wet researchers in the area of systemslevel  ...  Ainali  Pascal Kahlem  Ewan Birney All participants in CASIMIR and CASIMIRENFIN workshops • Addressed the need for scientific integration of mouse genetics and other databases relevant to functional  ... 
doi:10.1038/npre.2011.6158 fatcat:thxyu563qbgchemrsu46h5nbxa

Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics

Michael Gruenberger, Rudi Alberts, Damian Smedley, Morris Swertz, Paul Schofield, Casimir Consortium, Klaus Schughart
2010 BMC Research Notes  
Results: We organised workshops, meetings and used a questionnaire to identify the needs of biologist database users in mouse functional genomics.  ...  As a result, two use-cases were developed that can be used to drive future designs or extensions of mouse databases.  ...  Acknowledgements We thank George Gkoutos for helpful discussions on the technical developments of the use cases and all the members of the international advisory board of the CASIMIR consortium http://  ... 
doi:10.1186/1756-0500-3-16 pmid:20205870 pmcid:PMC2826352 fatcat:mkuczyzcnfdbdh3ydnhayc7mlq

Models for financial sustainability of biological databases and resources

C. Chandras, T. Weaver, M. Zouberakis, D. Smedley, K. Schughart, N. Rosenthal, J. M. Hancock, G. Kollias, P. N. Schofield, V. Aidinis
2009 Database: The Journal of Biological Databases and Curation  
Acknowledgements The authors would like to thank all CASIMIR members as well as participants to the various CASIMIR meetings for fruitful discussions. Conflict of interest statement. None declared.  ...  CASIMIR (http://www.casimir.org.uk), a Coordination Action funded by the European Commission, focuses on the dissemination and integration of databases relevant to the mouse as a model organism for human  ...  The CASIMIR consortium, in an effort to evaluate the financial sustainability models adopted by existing biological databases and resources, has examined the responses obtained from MRB's (Mouse Resource  ... 
doi:10.1093/database/bap017 pmid:20157490 pmcid:PMC2790311 fatcat:4oud7vhco5byhgkssop3hotgfm

Solutions for data integration in functional genomics: a critical assessment and case study

D. Smedley, M. A. Swertz, K. Wolstencroft, G. Proctor, M. Zouberakis, J. Bard, J. M. Hancock, P. Schofield
2008 Briefings in Bioinformatics  
In the light of these problems, the European Commission has funded a coordination action, CASIMIR (coordination and sustainability of international mouse informatics resources), with a remit to assess  ...  the technical and social aspects of database interoperability that currently prevent the full realization of the potential of data integration in mouse functional genomics.  ...  In order to appreciate and analyse the problems involved in database interoperability CASIMIR (coordination and sustainability of international mouse informatics resources) [8] was funded by the European  ... 
doi:10.1093/bib/bbn040 pmid:19112082 fatcat:6hoxfuktznhkbcfemik2rb4jqq

Mouse Resource Browser--a database of mouse databases

M. Zouberakis, C. Chandras, M. Swertz, D. Smedley, M. Gruenberger, J. Bard, K. Schughart, N. Rosenthal, J. M. Hancock, P. N. Schofield, G. Kollias, V. Aidinis
2010 Database: The Journal of Biological Databases and Curation  
Acknowledgements The authors would like to thank all CASIMIR members as well as participants at the various CASIMIR meetings for fruitful discussions. Conflict of interest. None declared.  ...  models of human immunological diseases; www.mugen-noe.org) and CASIMIR (Coordination and Sustainability of International Mouse Informatics Resources; http://www.casimir.org.uk).  ...  The numbers of sporadic or targeted mutations in mouse genes have recently been augmented by the activities of the International Mouse Knockout Consortium (IKMC) (1) , which, within 2 years, will have  ... 
doi:10.1093/database/baq010 pmid:20627861 pmcid:PMC2911845 fatcat:5yex4byp7vandlgsktsnabkioi

Research on animal model organisms funded by the European Commission's framework programmes

C. Desaintes
2008 Disease Models & Mechanisms  
Smaller research projects and coordination actions have also been funded and usually complement the bigger initiatives.  ...  Approximately €180 million was allocated to research on model organisms in FP6, with the majority of the funding being for mouse functional genomics.  ...  Table 1 . 1 Acronyms and web sites of the cited European projects Name Definition Web site CASIMIR Coordination and Sustainability of International Mouse Informatics Resources www.casimir.org.uk  ... 
doi:10.1242/dmm.001578 pmid:19093026 pmcid:PMC2590833 fatcat:lbbsoqhjdzcwhnipsypi2twybe

One Medicine, One Pathology, and the One Health concept

John P. Sundberg, Paul N. Schofield
2009 Journal of the American Veterinary Medical Association  
Health (AR49288, CA089713, AR047204, RR17436, to JPS) and the European Commission: CASIMIR LSHG-CT-2006-037811 (to PNS).  ...  Acknowledgments Work in the authors' laboratories is funded by grants from the Ellison Medical Foundation, the DebRA Foundation, the National Alopecia Areata Foundation, and the National Institutes of  ...  In December 2008, the second Coordination And Sustainability of International Mouse Informatics Resources (CASIMIR) meeting was held at the Nobel Forum, Stockholm, Sweden.  ... 
doi:10.2460/javma.234.12.1530 pmid:19527123 pmcid:PMC3804058 fatcat:fw7nfn22jnakzfsq6vr6rht3la

Post-publication sharing of data and tools

Paul N. Schofield, Tania Bubela, Thomas Weaver, Lili Portilla, Stephen D. Brown, John M. Hancock, David Einhorn, Glauco Tocchini-Valentini, Martin Hrabe de Angelis, Nadia Rosenthal
2009 Nature  
Despite existing guidelines on access to data and bioresources, good practice is not widespread. A meeting of mouse researchers in Rome proposes ways to promote a culture of sharing.  ...  of public resources and informatics tools.  ...  Comparison of the number of knockout mice recorded by the international Mouse Genome Informatics (MGI) database (http://www.informatics.jax.org/) with those deposited in IMSR repositories suggests that  ... 
doi:10.1038/461171a pmid:19741686 pmcid:PMC6711854 fatcat:szxjxs6odzearpn76jklexyyhi

A Mouse by Any Other Name …

John P. Sundberg, Paul N. Schofield
2009 Journal of Investigative Dermatology  
This is both an educational and a regulatory task, one in which it is vital to succeed if we are to efficiently and accurately share and use the huge volume of data emerging in the biosciences.  ...  Inevitably, the two go hand in hand, and the challenge we face is how to encourage researchers to comply with existing or emerging standard terminologies and nomenclatures.  ...  , CASIMIR.  ... 
doi:10.1038/jid.2009.81 pmid:19521404 pmcid:PMC3804061 fatcat:5hltjzjuivfp3npf2utxkzu4t4

Removing the cloak of invisibility: phenotyping the mouse

M. J. Justice
2008 Disease Models & Mechanisms  
of International Mouse Informatics Resources, www.casimir.org.uk).  ...  Finally, the databases should be coordinated and linked, which is not a simple task, but efforts have already started in Europe to do so through a project called CASIMIR (Coordination and Sustainability  ... 
doi:10.1242/dmm.001057 pmid:19048073 pmcid:PMC2562182 fatcat:fgdfynvnkjdzhp5342funiqo3i

The RIKEN integrated database of mammals

H. Masuya, Y. Makita, N. Kobayashi, K. Nishikata, Y. Yoshida, Y. Mochizuki, K. Doi, T. Takatsuki, K. Waki, N. Tanaka, M. Ishii, A. Matsushima (+16 others)
2010 Nucleic Acids Research  
Through the development of this database, we propose a novel methodology for the development of standardized comprehensive management of heterogeneous data sets in multiple databases to improve the sustainability  ...  , accessibility, utility and publicity of the data of biomedical information.  ...  ACKNOWLEDGEMENTS The authors thank Drs Kaoru Saijyo, Kazuyuki Mekada and Hatsumi Nakata in RIKEN BRC to help data import from Resource database to SciNetS.  ... 
doi:10.1093/nar/gkq1078 pmid:21076152 pmcid:PMC3013680 fatcat:72k5lclp2vbade5eklbvfrpzxi

Resources, repositories and rewards

V. Siegel
2009 Disease Models & Mechanisms  
I recently attended a meeting in Rome that focused on these issues, especially as they pertain to the community of scientists who use mouse models. Organized by CASIMIR  ...  By establishing the Resource Article section and stronger policies for materialssharing and citation, we hope to encourage and properly reward the development and sharing of resources, thereby accelerating  ...  Organized by CASIMIR Disease Models & Mechanisms (Coordination and Sustainability of International Mouse Informatics Resources), the meeting included the major stakeholders in the world of reagent sharing  ... 
doi:10.1242/dmm.004259 pmid:19726796 pmcid:PMC2737566 fatcat:33yisxkfsbagzblnwo2goghbom

Génomique fonctionnelle de la souris : la dynamique européenne

Régis Masson, Tania Sorg, Xavier Warot
2007 M S.Médecine Sciences  
(Coor- dination and Sustainability of Interna- tional Mouse Informatics Resources).  ...  L'IKMC (International Knock-out Mouse Consortium), récemment créé, coordonnera les activités des trois programmes de manière à éviter la redondance du travail et à assurer le ciblage du plus grand nombre  ... 
doi:10.1051/medsci/20072310877 pmid:17937900 fatcat:hp6lqhxikndxfaoit5km737ete

MUGEN mouse database; Animal models of human immunological diseases

V. Aidinis, C. Chandras, M. Manoloukos, A. Thanassopoulou, K. Kranidioti, M. Armaka, E. Douni, D. L. Kontoyiannis, M. Zouberakis, G. Kollias
2007 Nucleic Acids Research  
The MUGEN mouse database (MMdb) (www.mugen-noe.org/database/) is a database of murine models of immune processes and immunological diseases.  ...  Its aim is to share and publicize information on mouse strain characteristics and availability from participating institutions.  ...  Schofield for critical reading of the article, CASIMIR partners for their valuable comments and the members of V. Aidinis' research team for their active support.  ... 
doi:10.1093/nar/gkm838 pmid:17932065 pmcid:PMC2238830 fatcat:dtorv5jrcza3jkfcwtugpmdfgu
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