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CAPS-DB: a structural classification of helix-capping motifs
2011
Nucleic Acids Research
Preserved Fulltext
CAPS-DB is a database of clusters of structural patterns of different capping types. The clustering algorithm is based in the geometry and the (r-t)space conformation of these regions. ...
The regions of the polypeptide chain immediately preceding or following an a-helix are known as Ntand Ct cappings, respectively. ...
As a result a novel and automated structural classification and database of helix cappings, CAPS-DB, is presented. ...
doi:10.1093/nar/gkr879
pmid:22021380
pmcid:PMC3245141
fatcat:7yyl4v3o25civg5ugjlkrvfot4
Machine Learning for Classification of Protein Helix Capping Motifs
[article]
2019
arXiv
pre-print
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
data (from CAPS-DB)--as the ground truth to train a bidirectional long short-term memory (BiLSTM) model to classify helix cap residues. ...
Previous work used highly empirical and heuristic methods to manually classify helix capping motifs. ...
Portions of this work were also supported by UVA and NSF CAREER award MCB-1350957. ...
arXiv:1905.00455v1
fatcat:6dxcqxaoavhxfibzvkxefjzuka