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Building biomedical web communities using a semantically aware content management system
2009
Briefings in Bioinformatics
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At the same time, a growing number of biological knowledge bases and biomedical resources are being structured for the Semantic Web. ...
Her research interests include design of interoperable bioinformatics systems and analysis of complex biomedical data using statistical and data-mining techniques. ...
The SCF is software for building scientific web communities based on a semantically enabled distribution of the open-source content management system Drupal (www.drupal.org). ...
doi:10.1093/bib/bbn052
pmid:19060302
fatcat:3iw7evisn5d2rhzboioneofqlu
Federating Distributed Social Data to Build an Interlinked Online Information Society
2009
IEEE Intelligent Systems
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Content types. • When data produced by online communities and personal information management systems is represented using shared, lightweight schemas (notably SIOC, now in wide use as demonstrated by ...
be instantiated in any online community that shares and collectively builds information on the Web. ...
doi:10.1109/mis.2009.113
fatcat:elove4zi7fdafn46qpy2pjhugm
Semantic mashup of biomedical data
2008
Journal of Biomedical Informatics
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[18] explore the combination of Semantic Web and Service technologies including Business Process Management and Service Oriented Architecture to build an adaptive medical workflow system. ...
In addition, the authors demonstrate how the Semantic Web can be used to annotate Web content for enabling semantic mashup. ...
doi:10.1016/j.jbi.2008.08.003
pmid:18703163
pmcid:PMC3742004
fatcat:utdd2zyj6zfklh5etnhe4gbwwq
Sharing Biomedical Learning Knowledge for Social Ambient Intelligence
2009
Journal of Computers
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In this paper, we describe a Bio-SAmI system, which is a Biomedical learning system that is context-aware and responsive to mobile learners sharing information on a social network. ...
Bio-SAmI is a Web 2.0 enabled system which employees Social Ambient Intelligence techniques. ...
Indeed, these problems will be solved only if the biomedical system and the learners use a common meaning for metadata values. ...
doi:10.4304/jcp.4.9.905-912
fatcat:yurmsrwt4vejhm4jajivnysf6i
A model-driven approach for representing clinical archetypes for Semantic Web environments
2009
Journal of Biomedical Informatics
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In this work, Semantic Web technologies are used to specify clinical archetypes for advanced EHR architectures. ...
Moreover, a solution combining Semantic Web and Model-driven Engineering technologies is proposed to transform ADL into OWL for the CEN EN13606 EHR architecture. ...
In fact, the archetype community is aware of the usefulness of Semantic Web technologies for classification. ...
doi:10.1016/j.jbi.2008.05.005
pmid:18590985
fatcat:vpkn63udjvepjlros3gmsxxwse
LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime
2009
JAMIA Journal of the American Medical Informatics Association
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Medicine (SNOMED), Current Procedural Terminology (CPT), and Gene Ontology (GO) have been developed and used to build a variety of IT applications in biology, biomedicine, and health care settings. ...
this gap using a common terminology model called the LexGrid model. ...
Introduction Semantic interoperability among health information systems is a longstanding aspiration of the health care community Consensus-based information models and biomedical ontologies can address ...
doi:10.1197/jamia.m3006
pmid:19261933
pmcid:PMC2732233
fatcat:stxhyrsxbrehxbbusihr7i6z7e
Semantic Sensor Web
2008
IEEE Internet Computing
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Several ongoing initiatives are helping to build relevant ontologies within various communities, such as the US National Institute of Standards and Technology (www.nist. gov/), the W3C, and the OGC. ...
Semantic Sensor Web The SSW is a framework for providing enhanced meaning for sensor observations so as to enable situation awareness. ...
doi:10.1109/mic.2008.87
fatcat:witzvxsnzjcull3sq6anknm2ky
Current Trends and New Challenges of Databases and Web Applications for Systems Driven Biological Research
2010
Frontiers in Physiology
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driven biomedical research. ...
We will mention their roles in integration of biological data and investigate some of the emerging design concepts and computational technologies that are likely to have a key role in the future of systems ...
However, software development using off-the-shelf tools pose several of its own problems than building a system from scratch or scaling a system by re-using components built internally in an organization ...
doi:10.3389/fphys.2010.00147
pmid:21423387
pmcid:PMC3059952
fatcat:3e72pyby35cidlaa6jr5llemuq
Biomedical Web, Collections and Meta-Analysis Literature Applications
[chapter]
2011
Biomedical Engineering - From Theory to Applications
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Introduction Cause and effect of the digital revolution is the production of a lot and different kinds of web tools, applications and resources that permit optimization the retrieve, management and analysis ...
The scientific communities recognize the value of the information, required it as a condition to perform fundamental research. ...
a computer system. ...
doi:10.5772/18133
fatcat:cjogvh6gindgbabo3aqh6qetyu
Semantic Web meets Integrative Biology: a survey
2012
Briefings in Bioinformatics
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We argue that IB can benefit significantly from the integration solutions enabled by Semantic Web (SW) technologies.The SW enables scientists to share content beyond the boundaries of applications and ...
In this review, we provide insight into how SW technologies can be used to build open, standardized and interoperable solutions for interdisciplinary integration on a global basis. ...
In this system, agents automatically generate semantic annotations for PubMed literature abstracts in terms of Gene Ontology (GO), and effectively transform textual contents into SW contents. ...
doi:10.1093/bib/bbs014
pmid:22492191
fatcat:n5xm5kbc75ethlnfwfmgwdtnhq
The OpenScienceLink architecture for novel services exploiting open access data in the biomedical domain
2014
Proceedings of the 18th Panhellenic Conference on Informatics - PCI '14
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introducing a web based Platform which offers efficient and intelligent added-value applications and services for exploiting open access scientific information in the biomedical domain. ...
data, organizing data journals, as well as for improved tools and techniques for bibliographic analysis and management of scientometrics. ...
The Content and Data Management Adaptor (CDMA) is responsible for the integration of the data management system of GoPubMed within the OpenScienceLink Platform. ...
doi:10.1145/2645791.2645811
dblp:conf/pci/KaranastasisACTEP14
fatcat:7gchbpxdezagjh4abdtuumtatu
User-centered semantic harmonization: A case study
2007
Journal of Biomedical Informatics
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The authors also compare BRIDG with related efforts to achieve semantic interoperability in healthcare, including UMLS, InterMed, the Semantic Web, and the Ontology for Biomedical Investigations initiative ...
Methods such as ontology alignment or use of metadata neither scale nor fundamentally alleviate semantic heterogeneity among information sources. ...
developers are aware of them and would like to use them [32] . ...
doi:10.1016/j.jbi.2007.03.004
pmid:17452021
fatcat:toyojd6ggvgbbpl4zc3wgj2pwe
Enhancing Clinical Data and Clinical Research Data with Biomedical Ontologies - Insights from the Knowledge Representation Perspective
2019
IMIA Yearbook of Medical Informatics
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Our aim is to clarify the representational differences between traditional data management and semantic-web-based data management by providing use cases of clinical data and clinical research data re-representation ...
Objectives: There exists a communication gap between the biomedical informatics community on one side and the computer science/artificial intelligence community on the other side regarding the meaning ...
Under this contract, the University of Arkansas is funded by Leidos Biomedical Research subcontract 16X011. Funding was also provided by U24CA215109 and 3U24CA215109-02S1. ...
doi:10.1055/s-0039-1677912
pmid:31419826
pmcid:PMC6697506
fatcat:o5pk74rqebhsfhhmt5aems2z2q
A Semantic-Based Approach for Managing Healthcare Big Data: A Survey
2020
Journal of Healthcare Engineering
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In the recent few years, a large number of organizations and companies have shown enthusiasm for using semantic web technologies with healthcare big data to convert data into knowledge and intelligence ...
Based on our literature review, we will discuss how different techniques, standards, and points of view created by the semantic web community can participate in addressing the challenges related to healthcare ...
Current study 2020 is study reviews the state of the art of semantic web technologies in healthcare management systems. ...
doi:10.1155/2020/8865808
pmid:33489061
pmcid:PMC7787845
fatcat:gorgipqn6famhkeffmqzr4tacq
A Semantic Web for bioinformatics: goals, tools, systems, applications
2008
BMC Bioinformatics
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The paper includes a proposal for a generic infrastructure for knowledge management on the Semantic Web that is based on two interrelated ontologies: Ontology Metadata Vocabulary and Semantic Directory ...
Even though a specific formal language able to describe all the properties of biological systems has not yet been designed, some properties of formal languages can be very useful to describe and manage ...
doi:10.1186/1471-2105-9-s4-s1
pmid:18460170
pmcid:PMC2367628
fatcat:axiel3c56vgo5ajdw4uv6riz6q
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