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The Otto Warburg International Summer School and Workshop on Networks and Regulation

Peter F Arndt, Martin Vingron
2007 BMC Bioinformatics  
Publish with Bio Med Central and every scientist can read your work free of charge "BioMed Central will be the most significant development for disseminating the results of biomedical researc h in our  ...  This article has been published as part of BMC Bioinformatics Volume 8 Supplement 6, 2007: Otto Warburg International Summer School and Workshop on Networks and Regulation.  ...  The statistics of gene regulation is further elucidated by Michael Lassig [6] . In his review he covers the biophysical, bioinformatics, and evolutionary aspects of gene regulation.  ... 
doi:10.1186/1471-2105-8-s6-s1 fatcat:ckhb565congjnl6dafmmrtv34q

Teaching Bioinformatics at the Secondary School Level

Fran Lewitter, Philip E. Bourne
2011 PLoS Computational Biology  
October 2011 | Volume 7 | Issue 10 | e1002242  ...  A recent issue of Briefings in Bioinformatics was dedicated to bioinformatics education [7] with a specific example of programs for secondary school students [8, 9] .The ISCB Education committee is  ... 
doi:10.1371/journal.pcbi.1002242 pmid:22046116 pmcid:PMC3203059 fatcat:am2ggr2z6ndpdesmog5sxm7ovm

ACP-GCN: the identification of anticancer peptides based on Graph Convolution Networks

Bing Rao, Lichao Zhang, Guoying Zhang
2020 IEEE Access  
The excellent predictive ability will rapidly push forward their applications in cancer therapy.  ...  In this model, we for the first time take the ACP prediction as a graph classification task, where each peptide sample is represented as a graph.  ...  Lin, "A Brief Survey of Machine 10.1093/bioinformatics/btaa667. [54] Learning H.  ... 
doi:10.1109/access.2020.3023800 fatcat:okdz5qgrwjfollkuii7ldnv3iu

Bioinformatics and Molecular Evolution

Damian Counsell
2005 Comparative and Functional Genomics  
I'm biased but, to me, one of the most important chapters in any textbook of classical bioinformatics has to be the one that covers sequence alignment algorithms -in this case Chapter 6.  ...  Many current bioinformatics texts are good users' guides to the confusion of resources available, but this short volume represents a well-rounded programme in classical bioinformatics.  ... 
doi:10.1002/cfg.486 fatcat:v742oiejn5abzo6h3sda6hmiei

Deep learning in bioinformatics and biomedicine

Daniel Berrar, Werner Dubitzky
2021 Briefings in Bioinformatics  
EDITORIAL Deep learning in bioinformatics and biomedicine Deep learning is a subfield of machine learning that considers computational models with multiple processing layers [1, 3, 6] .  ...  Studies in biology and medicine rests on ever-growing volumes of complex data that characterize phenomena across a wide range of physical and organizational scales, from molecules to environments [10,  ... 
doi:10.1093/bib/bbab087 pmid:33693457 pmcid:PMC8485073 fatcat:znwucse3gzfcfoywxq4qp66l6m

Machine learning applications in bioinformatics

Jirí Kléma
2012 Conference on Theory and Practice of Information Technologies  
This paper provides a brief overview of the topics and works discussed during my talk on machine learning applications in bioinformatics.  ...  Bioinformatics directly motivates some cutting edge ML projects such as automated hypotheses generation and learning of optimal workflows. [6] reports the development of Robot Scientist "Adam", which  ... 
dblp:conf/itat/Klema12 fatcat:olxmaiwpgjce3bwbuw45napamy

UniCarbKB: Putting the pieces together for glycomics research

Matthew P. Campbell, Catherine A. Hayes, Weston B. Struwe, Marc R. Wilkins, Kiyoko F. Aoki-Kinoshita, David J. Harvey, Pauline M. Rudd, Daniel Kolarich, Frederique Lisacek, Niclas G. Karlsson, Nicolle H. Packer
2011 Proteomics  
In order to achieve this, the framework is committed to the development of tools and procedures that support data annotation, and expanding interoperability through cross-referencing of existing databases  ...  Current funding is provided by the Australian Research Council, Australian National Data Service and The Swedish Foundation for International Cooperation in Research and Higher Education.  ...  (ESF) which stated in its policy briefing that ''to further develop diagnostic tools, preventive medicines (vaccines) and therapeutic drugs a better understanding of glycosylated molecules is required'  ... 
doi:10.1002/pmic.201100302 pmid:21898825 fatcat:oxz6sxorarcbbeqstqjocapnwu

Bioinformatics research at BGRS-2018

Tatiana V. Tatarinova, Ming Chen, Yuriy L. Orlov
2019 BMC Bioinformatics  
Round table on education in bioinformatics  ...  Kochetov for organization of the multi-conference and providing platform for international bioinformatics research.  ...  Below is a brief summary of the papers in this special issue. Ivanisenko et al.  ... 
doi:10.1186/s12859-018-2566-7 fatcat:unhju3rjwzgadc3scgwkna24te

Computational models in genetics at BGRS-2018

Yuriy L. Orlov, Tatiana V. Tatarinova, Alex V. Kochetov
2019 BMC Genetics  
Young scientists gathered in Novosibirsk for a School "Systems Biology and Bioinformatics" (SBB-2018) co-authored current issue and parallel Supplements 2019 [5] [6] [7] [8] [9] .  ...  The best papers were selected for publication in this special issue, and the brief summary is presented below.  ...  Publisher's Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.  ... 
doi:10.1186/s12863-019-0724-1 pmid:30885131 pmcid:PMC6421937 fatcat:bap2i5np4zbltax3sud66zkroq

Data for whole and mitochondrial proteome of human embryonic stem cells

Faezeh Shekari, Hossein Nezari, Yu-Ju Chen, Hossein Baharvand, Ghasem Hosseini Salekdeh
2017 Data in Brief  
In the present article we endeavour to locate new proteins and pathways in human embryonic stem cells (hESCs) by mass spectrometry and bioinformatics analysis.  ...  We have analyzed total and mitochondrial proteins extracted from three biological replicates of the hESC H9 cell line according to mass spectrometry proteomics and bioinformatics investigations.  ...  Next, we added 40% acrylamide:bisacrylamide (29:1 v/v, 5:14 sample volume), 10% w/v APS (0.7:14 sample volume), and 100% TEMED (0.3:14 sample volume) directly to the sample.  ... 
doi:10.1016/j.dib.2017.05.036 pmid:28664172 pmcid:PMC5480819 fatcat:tvmtkuf2hvbo3lumwckqotlte4

Adapting bioinformatics curricula for big data

Anna C. Greene, Kristine A. Giffin, Casey S. Greene, Jason H. Moore
2015 Briefings in Bioinformatics  
In summary, specific challenges associated with big data provide an important opportunity to update existing curricula, but we do not foresee a wholesale redesign of bioinformatics training programs.  ...  While bioinformatics programs have traditionally trained students in data-intensive science, we identify areas of particular biological, computational and statistical emphasis important for this era that  ...  [6] and bias and confounding in the data [6] .  ... 
doi:10.1093/bib/bbv018 pmid:25829469 pmcid:PMC4719066 fatcat:hvcvobs2urchpfntovoqkqc7s4

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

Maria Victoria Schneider, Philippa C. Griffin, Sonika Tyagi, Madison Flannery, Saravanan Dayalan, Simon Gladman, Nathan Watson-Haigh, Philipp E. Bayer, Michael Charleston, Ira Cooke, Rob Cook, Richard J. Edwards (+6 others)
2017 Briefings in Bioinformatics  
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia Briefings in Bioinformatics, 2017; OnlinePubl:071-1-071-6 He is also  ...  The EMBL-ABR mission is to: (1) increase Australia's capacity in bioinformatics and data sciences; (2) contribute to the development of training in bioinformatics skills; (3) showcase Australian data sets  ...  An early example is the Australian National Genome Information Service [6] , started in 1991 but which ceased operations in 2009, which itself evolved out of the Sydney University Sequence Analysis Interface  ... 
doi:10.1093/bib/bbx071 pmid:29106479 fatcat:rddz4ymlandfvge6lknmcjn3dy

Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses

Pablo H.C.G. de Sá, Adonney A.O. Veras, Adriana R. Carneiro, Rafael A. Baraúna, Luís C. Guimarães, Kenny C. Pinheiro, Anne C. Pinto, Siomar C. Soares, Maria P.C. Schneider, Vasco Azevedo, Artur Silva, Rommel T.J. Ramos
2015 Data in Brief  
The sequencing data of all conditions are available in the European Bioinformatics Institute (EBI) repository under accession number E-MTAB-2017.  ...  The data produced was processed to evaluate the differential gene expression, which is helpful to understand the adaptation mechanisms during the infection in the host.  ...  . / Data in Brief 5 (2015) 963-966  ... 
doi:10.1016/j.dib.2015.11.010 pmid:26702428 pmcid:PMC4669661 fatcat:xfp2tq5bebaanaz6rvi6kt2274
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