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Scientific SPARQL: Semantic Web Queries over Scientific Data

Andrej Andrejev, Tore Risch
2012 2012 IEEE 28th International Conference on Data Engineering Workshops  
We define an extended version of the Semantic Web query language SPARQL called Scientific SPARQL, SciSPARQL. It is targeted mainly at scientific computing and laboratory data management.  ...  A back-end relational database provides persistent storage.  ...  We use the Chelonia system [19] as a distributed relational back-end for scalable storage of very large arrays also based on chunking/tiling.  ... 
doi:10.1109/icdew.2012.67 dblp:conf/icde/AndrejevR12 fatcat:p3yl2hmtivg3hh3hivclrc4zfy

Statistics in the Jury Box: How Jurors Respond to Mitochondrial DNA Match Probabilities

David H. Kaye, Valerie P. Hans, B. Michael Dann, Erin Farley, Stephanie Albertson
2007 Journal of Empirical Legal Studies  
Specifically, we examine how jurors who responded to summonses for jury duty evaluated portions of videotaped testimony involving probabilities and statistics.  ...  This article describes parts of an unusually realistic experiment on the comprehension of expert testimony on mitochondrial DNA (mtDNA) sequencing in a criminal trial for robbery.  ...  Q: Well, let's explore that a bit further. You used the database of five thousand or so individuals to arrive at this conclusion, didn't you? A: That's right. Q: Is the database a random sample?  ... 
doi:10.1111/j.1740-1461.2007.00107.x fatcat:ayf6snnflbes7pozk4xzi3yrmu

Solving games

M.J.H. Heule, L.J.M. Rothkrantz
2007 Science of Computer Programming  
Based on our concept, we expect that new solving techniques are required to obtain solutions for unsolved games.  ...  Besides well-known classic games, the solvability of popular and recent games zèrtz, dvonn, and yinsh are analyzed.  ...  Acknowledgements The first author was supported by the Dutch Organization for Scientific Research (NWO) under grant 617.023.306.  ... 
doi:10.1016/j.scico.2007.01.004 fatcat:kdpxcldnergslpreopskqxujfe

Efficient genotype compression and analysis of large genetic-variation data sets

Ryan M Layer, Neil Kindlon, Konrad J Karczewski, Aaron R Quinlan
2015 Nature Methods  
A widely-held hypothesis posits that the remaining heritability is explained in part by rare, and thus largely unknown, genetic variation in the human population 1 .  ...  GQT's compressed genotype index minimizes decompression for analysis, and performance relative to existing methods improves with cohort size.  ...  Chiang for conceptual discussions, I. Levicki for helpful advice on AVX2 operations, both S. McCarthy and P. Danecek for their guidance with htslib, and Z.  ... 
doi:10.1038/nmeth.3654 pmid:26550772 pmcid:PMC4697868 fatcat:enotd2owmfhuxh6najz55745qi

Structural Determinants of Sleeping Beauty Transposase Activity

György Abrusán, Stephen R Yant, András Szilágyi, Joseph A Marsh, Lajos Mátés, Zsuzsanna Izsvák, Orsolya Barabás, Zoltán Ivics
2016 Molecular Therapy  
DNA and protein-protein interactions generally reduce transposition rate, although most hyperactive Users may view, print, copy, and download text and data-mine the content in such documents, for the  ...  strongly reduce transposition rate; 3) Mutations with a strong effect on free energy of folding in the DDE domain of the transposase significantly reduce transposition rate. 4) Mutations that influence  ...  Kay for support, and the referees for useful comments and suggestions.  ... 
doi:10.1038/mt.2016.110 pmid:27401040 pmcid:PMC5010145 fatcat:ryck4pcxbjgangtuksrpcqp2ya

The crucial role of the public health sciences in the postgenomic era

Gilbert S Omenn
2002 Genetics in Medicine  
Genomic sequence information and gene and protein expression patterns must be linked with information about diet and metabolism, lifestyle behaviors, diseases and medications, and microbial, chemical,  ...  and physical exposures.  ...  GAM-BIT combines long-range polymerase chain reaction, high efficiency in vitro transposition, transformation and recombination, and genetic footprinting.  ... 
doi:10.1097/00125817-200211001-00005 pmid:12544483 fatcat:6he2czbykvgr7plyprpbgig74e

A Hybrid Approach to Protect Palmprint Templates

Hailun Liu, Dongmei Sun, Ke Xiong, Zhengding Qiu
2014 The Scientific World Journal  
Heterogeneous space is designed for combining random projection and fuzzy vault properly in the hybrid scheme.  ...  Palmprint database based experimental results well support the theoretical analyses and demonstrate the effectiveness of proposed hybrid approach.  ...  Acknowledgments This work is supported by NSFCs (nos. 61201158 and 61201203), PCSIRT (no. IRT201206), and the Key Laboratory of Advanced Information Science and Network Technology of Beijing.  ... 
doi:10.1155/2014/686754 pmid:24982977 pmcid:PMC3985310 fatcat:b7dmfr627ranrax7dushmutz6m

Automatic Recognition of Samples in Musical Audio

Jan Van Balen, Joan Serrà
2011 Zenodo  
The assembly of a ground truth database for evaluation was also part of the work and restricted to hip hop songs, the first and most famous genre to be built on samples.  ...  The systems were evaluated using the ground truth database and their performance is discussed in terms of the retrieved items to identify the main challenges for future work.  ...  It is shown that a few matches per second (less then 5% of bit strings) should suffice to identify a 3 second query in a large database.  ... 
doi:10.5281/zenodo.3754086 fatcat:hqxrkx6bezcjxjmgfycpkieklm

The Manifest Destiny of Artificial Intelligence

Brian Hayes
2012 American Scientist  
The first eight moves for each side are shown here; after the computer's 27th move, Nealey resigned.  ...  In particular, the ordering of the English words is done by an alignment process that starts with the French sequence and allows for insertions, deletions and transpositions.  ...  Russell and Norvig give a brief history of AI, where recent developments are introduced under the rubric "AI adopts the scientific method." This characterization seems a bit heavy-handed.  ... 
doi:10.1511/2012.97.282 fatcat:ccjk54nuxfdkln24fm2j34vzei

Efficient genotype compression and analysis of large genetic variation datasets [article]

Ryan M Layer, Neil Kindlon, Konrad J Karczewski, Exome Aggregation Consortium ExAC, Aaron R Quinlan
2015 bioRxiv   pre-print
Furthermore, we show that this indexing strategy facilitates population and statistical genetics measures such as principal component analysis and burden tests.  ...  Based on its computational efficiency and by complementing existing toolsets, GQT provides a flexible framework for current and future analyses of massive genome datasets.  ...  ACKNOWLEDGEMENTS We are grateful to Colby Chiang for conceptual discussions, Igor Levicki for helpful advice on AVX2 operations, both Shane McCarthy and Petr Danecek for their guidance with htslib, and  ... 
doi:10.1101/018259 fatcat:yhzkfsv3w5d2vpluloow6lh5wa

Long-term clinical and hemodynamic evaluation of porcine valved conduits implanted from the right ventricle to the pulmonary artery

Gérard Champsaur, Jacques Robin, Alain Curtil, François Tronc, Catherine Vedrinne, François Sassolas, André Bozio, Jean Ninet
1998 Journal of Thoracic and Cardiovascular Surgery  
ation by Ross and Somerville 3 in 1966, were also used for the correction of truncus arteriosus in 1968 4 and to repair complex forms of D-transposition of the great vessels, in which case the procedure  ...  Reoperation was required for progressive conduit obstruction between 1.1 and 17.7 years after implantation (mean 7.4 ± 4.8 years) in 25 patients (24%, 70% CL 15%-33%), with generally very few symptoms,  ...  For the statistical analysis, data were entered into a computerized database and analyzed with a statistical package (STATISTICA, StatSoft, Inc, Tulsa, Okla).  ... 
doi:10.1016/s0022-5223(98)00443-7 pmid:9806386 fatcat:mad6gjzshnal7i4ujyljtcvbcy

Composite Bloom Filters for Secure Record Linkage

Elizabeth A. Durham, Murat Kantarcioglu, Yuan Xue, Csaba Toth, Mehmet Kuzu, Bradley Malin
2014 IEEE Transactions on Knowledge and Data Engineering  
To accomplish these goals, we introduce a statistically-informed method to generate BF encodings that integrate bits from multiple fields, the frequencies of which are provably associated with a minimum  ...  ., Surname), however, when databases are maintained by disparate organizations, the disclosure of such information can breach the privacy of the corresponding individuals.  ...  He is a recipient of the Presidential Early Career Award for Scientists and Engineers (PECASE).  ... 
doi:10.1109/tkde.2013.91 pmid:25530689 pmcid:PMC4269299 fatcat:roa47u65xjc3jfntyditlhoimm

Image Realization Steganography by Secure Key Transmission

S. Angelin Nivedita, Dr. T. Priyaradhikadevi
2018 International Journal of Trend in Scientific Research and Development  
image when the amount of additional data is not too large.  ...  If the receiver has both the data hiding key and the encryption key, can extract the additional data and recover the original content without any error by exploiting the spatial correlation in natural  ...  INTRODUCTION Data mining, the extraction of hidden predictive information from large databases, is a powerful new technology with great potential to help companies focus on the most important information  ... 
doi:10.31142/ijtsrd9654 fatcat:jdn5wzcambeitfwgwd4nelr3su

Risk stratification in paediatric open-heart surgery1

N KANG, T COLE, V TSANG, M ELLIOTT, M DELEVAL
2004 European Journal of Cardio-Thoracic Surgery  
The risk models formulated permit risk prediction and allow for analysis of surgical results.  ...  In this model, the significance of the 'preoperative' risk factors was P ¼ 0:0003 for age and P , 0:0001 for RACHS-1 risk category. The area under the ROC curve was 0.81 for the second model.  ...  Research at the Institute of Child Health and Great Ormond Street Hospital for Children NHS Trust benefits from Research and Development funding received from the NHS Executive.  ... 
doi:10.1016/j.ejcts.2004.03.038 pmid:15200974 fatcat:weh7zdmgxzcehaxqod7vzik4be

Emergence of Graphing Practices in Scientific Research

Wolff-Michael Roth
2004 Journal of Cognition and Culture  
I draw on the semantics of symbolic systems for articulating competencies and breakdowns in scientists' graphing-related practices.  ...  Drawing on five years of fieldwork, the present study was designed to investigate graphs and graph-related skills in scientific research.  ...  bit stuck with that.  ... 
doi:10.1163/1568537042484940 fatcat:zimjzwvxzrhehj3dsnu6sv7gh4
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