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Biocurators and Biocuration: surveying the 21st century challenges

S. Burge, T. K. Attwood, A. Bateman, T. Z. Berardini, M. Cherry, C. O'Donovan, l. Xenarios, P. Gaudet
2012 Database: The Journal of Biological Databases and Curation  
Acknowledgements We gratefully acknowledge the participation of all the biocurators who responded to the survey. Funding Funding for open access charge: International Society for Biocuration.  ...  Survey methodology and results The survey consisted of 37 questions for current biocurators and 13 questions for former biocurators.  ...  Inevitably, it was challenging to The numbers presented represent the average score for each aspect, with 1 being the lowest and 5 the highest. publicize the survey amongst former biocurators, as they  ... 
doi:10.1093/database/bar059 pmid:22434828 pmcid:PMC3308150 fatcat:kmbuv63rkneejmucciwxdhctyq

Fifth International Biocuration Conference : Meeting for Biocurators
Fifth International Biocuration Conference バイオキュレーターのためのミーティングに参加して

2012 Journal of Information Processing and Management  
Biocurators and biocuration: surveying the 21st century challenges. Database. vol. 2012: bar059. 3) Gaudet, Pascale; Bairoch, Amos; Field, Dawn et al.  ...  The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. Nucleic Acids Research. 2012, vol. 40, D1-8. 5 ) 5 白木澤佳子, 高木利久.  ... 
doi:10.1241/johokanri.55.214 fatcat:4pja24uhsbcjld4lwf3ye3iwmi

Biocuration: Distilling data into knowledge

2018 PLoS Biology  
The aim of this paper is to describe the nature of data as an asset, the role biocurators play in increasing its value, and consistent, practical means to measure effectiveness that can guide planning  ...  Strides have recently been made, but more awareness is needed of the essential role that biological data resources, including biocuration, play in maintaining and linking this ever-growing flood of data  ...  Acknowledgments Most instrumental for the composition of this paper are the members of the International Society for Biocuration (ISB) themselves, whose valuable contributions, helpful comments, sound  ... 
doi:10.1371/journal.pbio.2002846 pmid:29659566 pmcid:PMC5919672 fatcat:7oq5p3avend43k2wfbdm3ksz6y

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

Mahantesha Naika, Khader Shameer, Oommen K. Mathew, Ramanjini Gowda, Ramanathan Sowdhamini
2013 Plant and Cell Physiology  
We have employed an integrated biocuration and genomic data mining approach to characterize the data set of transcription factors and consensus binding sites from literature mining and stress-responsive  ...  Understanding the principles of abiotic and biotic stress responses, tolerance and adaptation remains important in plant physiology research to develop better varieties of crop plants.  ...  The authors thank University of Agricultural Sciences (Bangalore) and National Centre for Biological Sciences, Tata  ... 
doi:10.1093/pcp/pcs185 pmid:23314754 pmcid:PMC3583027 fatcat:bwqhyjponngx5mougabjfxyysa

Evidence in Practice of Tissue Healing with Latex Biomembrane: Integrative Review

Suélia de Siqueira Rodrigues Fleury Rosa, Mário Fabrício Fleury Rosa, Marcos Augusto Moutinho Fonseca, Glécia Virgolino da Silva Luz, Carlos Federico Domínguez Avila, Aldira Guimarães Duarte Domínguez, Aldene Guimarães Duarte Dantas, Von Braun Richter
2019 Journal of Diabetes Research  
An integrative review was held in the BIREME, LILACS, Burns, MEDLINE, PubMed, and SciELO databases, from 2000 to 2016, using the following descriptors: "healing," "diabetes mellitus," "wounds," and "latex  ...  Therefore, this work aims at summarizing the results, experiments, and scientific findings that certify or recommend the use of LBM as a new technique to be applied effectively in the treatment of wounds  ...  We thank the University of Brasília (UnB) for all the support granted.  ... 
doi:10.1155/2019/7457295 fatcat:5f5nmara4rfxnd5g3wdefk5qre

Information on EFMI Working and Project Groups

Rolf Engelbrecht, Patrick Weber
2012 IMIA Yearbook of Medical Informatics  
Wittenberg (D • Second version of "Nursing and Informatics for 21st Century" published together with Ch. Weaver, C. Delaney, P. Weber and R.  ...  Specifications, and is currently working on an ISO Technical Specification to provide guidance on implementation to the user community • organisation of a Survey on IT support to the decision & supply  ... 
doi:10.1055/s-0038-1638905 fatcat:6drtq3znyff53khosyajy4n2ri

Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices

Gopal P. Sarma, Victor Faundez
2017 Cellular Logistics  
We discuss the role of theory and modeling in different areas of physics and suggest that certain sub-disciplines of physics provide useful cultural analogies for imagining the future role of simulations  ...  Integrative biological simulations have a varied and controversial history in the biological sciences.  ...  Acknowledgments We would like to thank Stephen Larson, Charles Limouse, Piyush Kumar, Criss Hartzell, and several anonymous referees for insightful comments and critical reading of the manuscript.  ... 
doi:10.1080/21592799.2017.1392400 pmid:29296511 pmcid:PMC5739097 fatcat:j67eguofafe6zfmpal3fsjif3a

Providing the Missing Link: the Exposure Science Ontology ExO

Carolyn J. Mattingly, Thomas E. McKone, Michael A. Callahan, Judith A. Blake, Elaine A. Cohen Hubal
2012 Environmental Science and Technology  
The resulting major concepts forming the basis for the ontology are "exposure stressor", "exposure receptor", "exposure event", and "exposure outcome".  ...  Major concepts were defined and the ontology drafted and evaluated by a working group of exposure scientists and other ontology and database experts.  ...  In a recent report by the National Research Council (NRC) of the National Academy of Sciences (NAS), "Toxicity Testing in the 21st Century: A Vision and a Strategy," the authors noted that population-based  ... 
doi:10.1021/es2033857 pmid:22324457 pmcid:PMC3314380 fatcat:t2iymydx7vawtmdwm6t2k3qpta

Crystallography and Databases

Ian Bruno, Saulius Gražulis, John R Helliwell, Soorya N Kabekkodu, Brian McMahon, John Westbrook
2017 Data Science Journal  
A session at SciDataCon2016 gave an overview of the largest extant crystallographic databases and their current activities and plans for the future.  ...  This review summarizes these presentations and considers them alongside other players in the field, demonstrating their variety, versatility and focus on quality and usefulness.  ...  The RCSB PDB is supported by the National Science Foundation (DBI 1338415), National Institutes of Health, and the Department of Energy; PDBe by the Wellcome Trust, BBSRC, MRC, EU, CCP4, and EMBL-EBI;  ... 
doi:10.5334/dsj-2017-038 fatcat:d7adzhjqxvf4zfcfzgaen2qf3e

Labor Out of Place: On the Varieties and Valences of (In)visible Labor in Data-Intensive Science

Michael J. Scroggins, Irene V. Pasquetto
2020 Engaging Science, Technology, and Society  
Further, we note where data-intensive science intersects and overlaps with broader trends in the 21st century economy.  ...  We conceptualize data-intensive science as an evolving field and set of practices and highlight parallels between the labor literature and Science and Technology Studies.  ...  Acknowledgements Research reported here was supported in part by grants from the National Science Foundation (NSF) and the Alfred P.  ... 
doi:10.17351/ests2020.341 fatcat:k7xoue2sangtlbbxtvdn3yat7e

Deep Learning applications for COVID-19

Connor Shorten, Taghi M. Khoshgoftaar, Borko Furht
2021 Journal of Big Data  
AbstractThis survey explores how Deep Learning has battled the COVID-19 pandemic and provides directions for future research on COVID-19.  ...  We hope that this survey will help accelerate the use of Deep Learning for COVID-19 research.  ...  Acknowledgements We would like to thank the reviewers in the Data Mining and Machine Learning Laboratory at Florida Atlantic University.  ... 
doi:10.1186/s40537-020-00392-9 pmid:33457181 pmcid:PMC7797891 fatcat:aokxo63z2rhdpfxo3egyf3xpcm

The Fourth Paradigm – Data-Intensive Scientific Discovery [chapter]

Tony Hey
2012 Communications in Computer and Information Science  
The F o u r T H Data-In t e n s I v e scIen t I f I c DIs c o v e r y P a r a d i g m MiCroSoF T reSe arCH REDMOND, WASHINGTON  ...  We also thank our families and colleagues for their support during the intensive editorial process.  ...  The exceptional efforts of the project team, including Ina Chang, Marian Wachter, Celeste Ericsson, and Dean Katz, are also gratefully acknowledged.  ... 
doi:10.1007/978-3-642-33299-9_1 fatcat:etue636ubrandga5corvkx3d7u

Circular Bioeconomy Business Models to Overcome the Valley of Death. A Systematic Statistical Analysis of Studies and Projects in Emerging Bio-Based Technologies and Trends Linked to the SME Instrument Support

Fabiana Gatto, Ilaria Re
2021 Sustainability  
Reducing the environmental pressure along the products life cycle, increasing efficiency in the consumption of resources and use of renewable raw materials, and shifting the economic system toward a circular  ...  and a climate-neutral model represent the heart of the current macro-trends of the European Union (EU) policy agendas.  ...  pilot reactor under biorefinery concept Ruiz H.A. et al., 2020 Perspectives on "game changer" global challenges for sustainable 21st century: Plant-based diet, unavoidable food waste biorefining, and circular  ... 
doi:10.3390/su13041899 fatcat:3mdie5xg6ravlnsgsukh3ms35i

Internationalisation dynamics in contemporary South American life sciences: the case of zebrafish [article]

Rodrigo Liscovsky Barrera, University Of Edinburgh, Niki Vermeulen, Tod Van Gunten, Alfredo Yegros-Yegros
the scientific enterprise; namely, the global mobility of ideas, knowledge and researchers.  ...  In Science and Technology Studies (STS), social research on model organisms is perhaps the clearest example of the influence of the dominant vision of internationalisation.  ...  21st century and with it, greater regional cooperation.  ... 
doi:10.7488/era/2113 fatcat:ugyobxgrtfckrdneel5w2mxcsm

Roles and responsibilities: libraries, librarians and data [chapter]

Sheila Corrall
Managing Research Data  
data and for use of the research data management pyramid for libraries as a framework for the central part of the chapter.  ...  Acknowledgements I am indebted to Martin Lewis, Director of Library Services and University Librarian at the University of Sheffield for discussion of the role of libraries and librarians in managing research  ...  to users are still key activities for the library in the 21st century (Brophy, 2007) .  ... 
doi:10.29085/9781856048910.007 fatcat:wmpshr6a6vak7pw7lebycyw4wi
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