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BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos (+23 others)
2016 Database: The Journal of Biological Databases and Curation  
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.  ...  Acknowledgements The authors would like to thank Cecilia Arighi for providing resources for the user questionnaire.  ...  Following the success of BioC in BioCreative IV, the BioCreative V BioC track addressed a collaborative task to build an assistant system for BioGRID curation.  ... 
doi:10.1093/database/baw121 pmid:27589962 pmcid:PMC5009341 fatcat:bqe4o77fizadhf5e3xese3i23y

Overview of the interactive task in BioCreative V

Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai (+44 others)
2016 Database: The Journal of Biological Databases and Curation  
The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated.  ...  The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful TM tools, and providing a communication channel between the biocuration  ...  Acknowledgements We would like to acknowledge all the users and team members who have participated in this activity throughout BioCreative. Conflict of interest. None declared.  ... 
doi:10.1093/database/baw119 pmid:27589961 pmcid:PMC5009325 fatcat:ldpn6gjxircjlibqtysi57cztq

BioCreative-IV virtual issue

C. N. Arighi, C. H. Wu, K. B. Cohen, L. Hirschman, M. Krallinger, A. Valencia, Z. Lu, J. W. Wilbur, T. C. Wiegers
2014 Database: The Journal of Biological Databases and Curation  
We would like to thank the the BioCreative User Advisory Group and the task co-organizers Donald Comeau, Rezarta Islamaj Dogan, Obdulia Rabal, Julen Oyarzabal, Allan Davis, Carolyn Mattingly, Kimberly  ...  Acknowledgments This issue is dedicated to the memory of our friend and colleague Phoebe Roberts who contributed significantly to the BioCreative effort in the past years.  ...  Over the years, BioCreative has collaborated with curators from a variety of databases, including Gene Ontology Annotation (6), IntAct (7), MINT (8), BioGRID (9), Flybase (10), Mouse Genome Database (11  ... 
doi:10.1093/database/bau039 pmid:24852177 pmcid:PMC4030502 fatcat:ov6v6jhv3vdinasqvot5zrm5cu

NTTMUNSW BioC modules for recognizing and normalizing species and gene/protein mentions

Hong-Jie Dai, Onkar Singh, Jitendra Jonnagaddala, Emily Chia-Yu Su
2016 Database: The Journal of Biological Databases and Curation  
Database URL: https://sites.google.com/site/hjdairesearch/Projects/isn-corpus V C The Author(s)  ...  developed for processing full-text articles.  ...  Acknowledgements The authors would like to thank all of the organizers of BioCreative 2015. The authors also would like to thank the two collaborating annotators, Ms. Hui-Jou Chou and Mr.  ... 
doi:10.1093/database/baw111 pmid:27465130 pmcid:PMC4962763 fatcat:ygvd3ryqyvg7zpeodhht3cfqru

Overview of the Interactive Task in BioCreative V

Qinghua Wang, Fabio Rinaldi, Et Al
2015
The tasks proposed are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated.  ...  The tasks proposed are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated.  ...  BioCreative is partially funded by NIH/NIGMS R13-GM109648-01A1; DOE: DE-SC0010838; NIH Intramural Research Program, National Library of Medicine.  ... 
doi:10.5167/uzh-116471 fatcat:elfvz7vs3zcx3obt33nak26rii

PIPE: a protein–protein interaction passage extraction module for BioCreative challenge

Yung-Chun Chang, Chun-Han Chu, Yu-Chen Su, Chien Chin Chen, Wen-Lian Hsu
2016 Database: The Journal of Biological Databases and Curation  
In this article, we propose PIPE, an interaction pattern generation module used in the Collaborative Biocurator Assistant Task at BioCreative V (http://www.biocreative.org/) to capture frequent protein-protein  ...  PIPE: a protein-protein interaction passage extraction module for BioCreative challenge.  ...  To this end, we proposed an interaction pattern generation approach for acquiring PPI patterns, which was utilized in the Collaborative Biocurator Assistant Task at BioCreative V.  ... 
doi:10.1093/database/baw101 pmid:27524807 pmcid:PMC4983456 fatcat:t54qwjehhzbafhdnixnpp72k5a

EMBnet.journal 18 Suppl. B

EMBnet Journal
2012 EMBnet journal  
Carlo Bernasconi and the Collegio Ghislieri in Pavia for their active support.  ...  These biocurators provided us with their average time needed for curation without support on the same task.  ...  Voorhees E (2001) Overview of the QA Track. In Proceedings of the TREC-10 Conference. NIST, Gaithersburg. 2001:157-165. 16.  ... 
doi:10.14806/ej.18.b.592 fatcat:wlwsmbdlfzbjtk7vyhiabdov6q