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BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data

Hongyan Wu, Toyofumi Fujiwara, Yasunori Yamamoto, Jerven Bolleman, Atsuko Yamaguchi
2014 Journal of Biomedical Semantics  
In this paper, we evaluate whether RDF native stores can be used to meet the needs of a biological database provider. Prior evaluations have used synthetic data with a limited database size.  ...  They do not show overwhelming advantage over each other; For data over 4 billion Virtuoso works best. 4store performs well on small data sets with limited features when the number of triples is less than  ...  Acknowledgements This work has been supported by the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency (JST).  ... 
doi:10.1186/2041-1480-5-32 pmid:25089180 pmcid:PMC4118313 fatcat:3crww7ajdfhqpamdjyspb6ifa4

Semantic Web technologies for the big data in life sciences

Hongyan Wu, Atsuko Yamaguchi
2014 BioScience Trends  
The life sciences field is entering an era of big data with the breakthroughs of science and technology. More and more big data-related projects and activities are being performed in the world.  ...  The increasing volume of data and the heterogeneous, complex varieties of data are two principal issues mainly discussed in life science informatics.  ...  Acknowledgements This work has been supported by the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency (JST).  ... 
doi:10.5582/bst.2014.01048 fatcat:x2rlpyjel5cybarma34ji6sq3y