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Best practices in bioinformatics training for life scientists
2013
Briefings in Bioinformatics
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possible thanks to EMBnet and SeqAhead (COST Action, BM1006), to The Genome Analysis Centre (TGAC, Norwich, UK), the Biotechnology and Biological Sciences Research Council (BBSRC, UK), and the SLU-Global Bioinformatics ...
This article summarizes the key discussion points from a more extensive best-practice document on bioinformatics training for life scientists. ...
CONCLUDING REMARKS Demand for bioinformatics training is increasing as more and more life scientists, working in diverse research areas, are generating and using data produced by high-throughput methodologies ...
doi:10.1093/bib/bbt043
pmid:23803301
pmcid:PMC3771230
fatcat:i5ljsmqxxjah5bfy75ebfb5dku
A global perspective on evolving bioinformatics and data science training needs
2017
Briefings in Bioinformatics
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Basic data stewardship is still taught relatively rarely in life science education programmes, creating a chasm between theory and practice, and fuelling demand for bioinformatics training across all educational ...
Concerned by this, surveys have been conducted in recent years to monitor bioinformatics and computational training needs worldwide. ...
Acknowledgements The authors thank all the participants of the SEB Bioinformatics Workshop, held in Manchester (2014), and GOBLET 2014 AGM, held in Toronto, who contributed to wide-ranging discussions ...
doi:10.1093/bib/bbx100
pmid:28968751
fatcat:vl2jt4n3evb3nd735ikx7huxr4
Scientific Meeting 2014 "NGS Data after the Gold Rush" & "Management Committee" Meeting, Norwich, UK
2014
EMBnet journal
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training life scientists to make the most of existing solutions, and ensuring best practice in experimental design, in data quality control, analysis and storage, and in facilitating interoperability ...
practices both in the lab and in bioinformatics to do the best possible research. ...
doi:10.14806/ej.20.a.794
fatcat:6x5wbvdowja4tciboi2cgnnkbq
A Vision for Collaborative Training Infrastructure for Bioinformatics
2016
Figshare
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and existing life scientists. ...
While college curricula are slower to adapt, grassroots, startup-spirited organizations such as Software and Data Carpentry have made impressive inroads in training on the best practices of software use ...
ACKNOWLEDGMENTS The authors thank Lindsay Barone, Jonah Duckles and Greg Wilson for helpful comments and corrections. ...
doi:10.6084/m9.figshare.3807723
fatcat:hdvs4p6mdnaxdg567x57qj7v4e
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR
2019
F1000Research
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The de.NBI training program trained thousands of scientists from Germany and beyond in many different areas of bioinformatics. ...
The de.NBI provides (i) service, (ii) training, and (iii) cloud computing to users in life sciences research and biomedicine in Germany and Europe and (iv) fosters the cooperation of the German bioinformatics ...
Nanopore best practice workshop. ...
doi:10.12688/f1000research.20244.1
pmid:33163154
pmcid:PMC7607484
fatcat:g4gztfjahrbkdepxw6rgkjfhjy
NIBLSE: A Network for Integrating Bioinformatics into Life Sciences Education
2015
CBE - Life Sciences Education
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ACKNOWLEDGMENTS The authors thank the members of NIBLSE for their contributions to the network and for their participation in the April 2014 conference. ...
how best to integrate bioinformatics into life sciences curricula. ...
Challenges • Many current faculty were trained before the widespread use of bioinformatics in research and thus need training in this area themselves in order to teach bioinformatics to their students. ...
doi:10.1187/cbe.15-06-0123
pmid:26466989
pmcid:PMC4710410
fatcat:z6xzliiybrc5fjc3s5fcfpmroa
Engineering bioinformatics: building reliability, performance and productivity into bioinformatics software
2015
Bioengineered
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engineering best practices in that field. ...
Life scientists show no such consensus. ...
doi:10.1080/21655979.2015.1050162
pmid:25996054
pmcid:PMC4601517
fatcat:pk34huwztzaxdain5dwzgwvi2a
FAIR Training in ELIXIR Europe
2019
Zenodo
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This infrastructure makes it easier for scientists to find and share data, exchange expertise, and agree on best practices, such as best practices for developing and sharing training materials. ...
The ELIXIR Training Platform coordinates training activities, trains life-science researchers, and helps scientists and developers to find the training they need. ...
a
lized registry, e.g.,
Host it in a public repository
Or make the use rules public
in your metadata (e.g.,
membership or subscription)
10 recommendations to make your training materials FAIRer ...
doi:10.5281/zenodo.3349846
fatcat:z67seyd445crteupitx6h275ry
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
2015
PLoS Computational Biology
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training expertise, experience, and resources, aiming to put ad hoc training practices on a more professional footing for the benefit of all. ...
In recent years, high-throughput technologies have brought big data to the life sciences. ...
Acknowledgments We would like to thank Barbara van Kampen for providing administrative support. ...
doi:10.1371/journal.pcbi.1004143
pmid:25856076
pmcid:PMC4391932
fatcat:yeudcjpdkjgl3idlaksgy2ljd4
The application of project-based learning in bioinformatics training
2017
PLoS Computational Biology
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., and many other members of the EBI user-training-working group for their ideas and Twells, R. for being open-minded about reshaping an already successful formula. ...
audience of life scientists. ...
bioinformatics training practice. ...
doi:10.1371/journal.pcbi.1005620
pmid:28817584
pmcid:PMC5560525
fatcat:zpveh42cibeqfa5gqqgocbbocm
e-infrastructures from the viewpoint of bioinformatics
[article]
2018
Figshare
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Slides presented during the 2nd EOSC Stakeholders Forum in Vienna (https://www.eoscpilot.eu/events/second-eosc-stakeholders-forum) 21-22 Nov 2018, during the session "Users meet the service providers: ...
data Point researchers to the best solutions based on their requirements EOSC-Life training Data Experts, to be embedded in each RI and provide support to the various user groups. ...
/ optimal solution, instead of what colleagues are using
Training
30/10/2018
Open Access Week 2018
6
Thank you for your attention! ...
doi:10.6084/m9.figshare.7375916
fatcat:3dcyds7i7ze2xezwtrle67x3ny
Putting the Life Science RDM support landscape in context with RDMkit
2021
Zenodo
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For researchers, RDMkit is a one stop shop of information, advice and signposting to research data management know-how, tools, examples and best practice, written by life scientists for life scientists ...
RDMkit is recommended in the European Commission's Horizon Europe Program Guide as the "resource for Data Management guidelines and good practices for the Life Sciences." ...
RDM support throughout the entire life cycle of projects as outlined in DMPs Website focal point for guidance, information, best practice, examples Putting the Life Science RDM
support landscape in context ...
doi:10.5281/zenodo.5541423
fatcat:l24iprvzofg2flupobte2gejnu
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability
2013
Briefings in Bioinformatics
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He is involved in SEQanswers, an online community for next-generation sequencing technology. ...
Each chapter comes with practical exercises so readers may Jing-Woei Li is a postdoctoral fellow at The Chinese University of Hong Kong. ...
ACKNOWLEDGMENTS We thank Darren Logan for his advice and encouragement. ...
doi:10.1093/bib/bbt045
pmid:23793381
pmcid:PMC3771235
fatcat:dvrfsizvcbblhn2e5yfrils5ya
Building a local community of practice in scientific programming for life scientists
2018
PLoS Biology
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In this paper, we describe why and how to build a local community of practice in scientific programming for life scientists who use computers and programming in their research. ...
While most life scientists are well trained in the laboratory to conduct experiments, good practices with (big) data sets and their analysis are often missing. ...
Acknowledgments We are thankful to the Carpentries Foundation for assistance in workshop organization. ...
doi:10.1371/journal.pbio.2005561
pmid:30485260
pmcid:PMC6287879
fatcat:77nf6eoctrhkbnfz5lgybusxte
Training for bioinformatics and computational biology
2001
Bioinformatics
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If genome data are to be used effectively, what do Life Scientists need? ...
Thus, I believe the major goal for Computational Biology and Bioinformatics training should be to produce Ph.D. and post-doctoral fellows who can build independent research careers in Life Sciences Departments ...
doi:10.1093/bioinformatics/17.9.761
pmid:11590093
fatcat:kqmpwarjnrcgvdgj4myg76r5zy
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