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Best Practices for a Future Open Code Policy: Experiences and Vision of the Astrophysics Source Code Library [article]

Lior Shamir, Bruce Berriman, Peter Teuben, Robert Nemiroff, Alice Allen
2018 arXiv   pre-print
The Astrophysics Source Code Library (ASCL, is a successful initiative that advocates for open research software and provides an infrastructure for registering, discovering, sharing, and citing  ...  We are members of the Astrophysics Source Code Library's Advisory Committee and its editor-in-chief.  ...  The Astrophysics Source Code Library (ASCL, is a successful initiative that advocates for open research software and provides an infrastructure for registering, discovering, sharing, and citing  ... 
arXiv:1802.00552v1 fatcat:xqzsr4caarfc5dxy7xjcthqhwy

Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained

Daniel S. Katz, Lois Curfman McInnes, David E. Bernholdt, Abigail Cabunoc Mayes, Neil P. Chue Hong, Jonah Duckles, Sandra Gesing, Michael A. Heroux, Simon Hettrick, Rafael C. Jimenez, Marlon Pierce, Belinda Weaver (+1 others)
2019 Computing in science & engineering (Print)  
Software is the key crosscutting technology that enables advances in mathematics, computer science, and domain-specific science and engineering to achieve robust simulations and analysis for science, engineering  ...  In recent years, community members have established a range of grass-roots organizations and projects to address these growing technical and social challenges in software productivity, quality, reproducibility  ...  IDEAS, BSSw, and xSDK acknowledge support from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S.  ... 
doi:10.1109/mcse.2018.2883051 fatcat:jmemakin4bbtbb3sm2wbkfnlha

Digital Infrastructure in Astrophysics [article]

Frank Timmes, Rich Townsend, Lars Bildsten
2020 arXiv   pre-print
As with the digital infrastructure of our larger society today (e.g., Eghbal 2016), nearly all astronomical research relies on free, open source software (FOSS) written and maintained by a small number  ...  Astronomy, as a field, has long encouraged the development of free, open digital infrastructure (e.g., National Research Council 2010, 2011).  ...  MESA -Frank Timmes The Modules for Experiments in Stellar Astrophysics (MESA) source code is a set of FOSS modules for stellar astrophysics that can be used on their own, or combined to solve the coupled  ... 
arXiv:2001.02559v1 fatcat:j7kklh3tbva7fmaggvovunwa7a

From Open Data to Open Science

Rahul Ramachandran, Kaylin Bugbee, Kevin Murphy
2021 Earth and Space Science  
Acknowledgments Authors would like to thank Derek Koehl for his assistance in editing and improving the manuscript.  ...  They also thank all our colleagues within the Earth Science Data Systems Program NASA who provided insight and expertise that greatly assisted this research.  ...  longevity of code (Committee on Best Practices for a Future Open Code Policy for NASA Space Science, Space Studies Board, & Division on Engineering and Physical Sciences, 2018).  ... 
doi:10.1029/2020ea001562 fatcat:md6esg4eabbs5cpkaxkqrn7cly

The verified software repository: a step towards the verifying compiler

J.C. Bicarregui, C.A.R. Hoare, J.C.P. Woodcock
2006 Formal Aspects of Computing  
This has been a challenge for computing research for over thirty years, but the current state of the art now gives grounds for hope that it may be implemented in the foreseeable future.  ...  The Verified Software Repository is dedicated to a long-term vision of a future in which all computer systems justify the trust that Society increasingly places in them.  ...  In Formal Methods, the Community Z Tools project [CZT05] has produced open-source libraries for building and integrating Z tools.  ... 
doi:10.1007/s00165-005-0079-4 fatcat:zowtrexk4bbuzhirc5qwlmgtca

Attributing and Referencing (Research) Software: Best Practices and Outlook from Inria

Pierre Alliez, Roberto Di Cosmo, Benjamin Guedj, Alain Girault, Mohand-Said Hacid, Arnaud Legrand, Nicolas Rougier
2019 Computing in science & engineering (Print)  
We provide in this paper a contribution to the ongoing eeorts to develop proper guidelines and recommendations for software citation, building upon the internal experience of Inria, the French research  ...  However, there is a lack of adequate means to cite and reference software, for many reasons.  ...  The Astrophysics Source Code Library was started in 1999. Over the years it has established a curation process that enables the production of quality metadata for research software.  ... 
doi:10.1109/mcse.2019.2949413 fatcat:5kr6k4oxj5h2nlaa3o4a4lwaeq

Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1)

2014 Journal of Open Research Software  
These include mechanisms such as Digital Object Identifiers, publication of "software papers", and the use of online systems, for example source code repositories like GitHub.  ...  To highlight some of these issues and share experiences, the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1) was held in November 2013 in conjunction with the SC13  ...  Choi thanks Ian Foster, Director of the Computation Institute, University of Chicago, for encouraging her work in reliable reproducible research and supporting her trip to participate in the WSSSPE1 conference  ... 
doi:10.5334/ fatcat:ojxr3pysjjcp5ekihzz2jbad7u

Sustaining Research Software: an SC18 Panel [article]

Daniel S. Katz, Patrick Aerts, Neil P. Chue Hong, Anshu Dubey, Sandra Gesing, Henry J. Neeman, David E. Pearah
2019 arXiv   pre-print
And while much of it is made available under open source licenses, work is needed to develop, support, and sustain it, as underlying systems and software as well as user needs evolve.  ...  The outcome of the discussions, as presented in this paper, can inform choices of advance compute and data infrastructures to positively impact future research software and future research.  ...  The code has been in existence for nearly two decades, and has grown from being a code for astrophysics to serving six or more diverse research communities.  ... 
arXiv:1902.08942v1 fatcat:3n4uymbxinh6fkjj3kvstv7vem

Einstein Toolkit Community Integration and Data Exploration

Pablo Laguna, David Bader, Manuela Campanelli, Joshua Faber, Yosef Zlochower, Frank Löffler, Steven Brandt, Peter Diener, Gabrielle Allen, Matthew Turk
2017 Figshare  
Institute of Technology and the University of Illinois at Urbana-Champaign to NSF SSI solicitation 14-520 in 2015.  ...  Original summary, description, bibliography and data management plan for a collaborative proposal for Einstein Toolkit support and development submitted by Georgia Tech, Louisiana State University, Rochester  ...  Year 3: We will specify best practices for defining a new "system of equations" in the Einstein Exploration Module, and develop tools for evaluation and testing of new systems of equations.  ... 
doi:10.6084/m9.figshare.5306587 fatcat:7knrwz5xljd2dje5v67a2thpky

The benefits of open research: How sharing can help researchers succeed

Erin McKiernan, Philip E. Bourne, C. Titus Brown, Stuart Buck, Amye Kenall, Jennifer Lin, Damon McDougall, Brian Nosek, Karthik Ram, Courtney Soderberg, Jeffrey R. Spies, Kaitlin Thaney (+3 others)
2016 Figshare  
Open access, open data, open source, and other open scholarship practices are growing in popularity and necessity. However, widespread adoption of these practices has not yet been achieved.  ...  This is a preprint, which has been submitted for publication in an open access journal.  ...  that 427 publish the outcomes of preregistered research [118]. 428 6.2 Openness as a continuum of practices 429 While there are clear definitions and best practices for open access [119], open data [120  ... 
doi:10.6084/m9.figshare.1619902.v5 fatcat:l44pkrv5xng23no3bbpgo5doly

An open source software ecosystem for plasma physics

Nicholas A. Murphy, Erik Everson, Stephen Vincena, Tulasi Parashar, David Schaffner
2019 Zenodo  
The research team will lead the development of PlasmaPy and affiliated packages to foster the creation of an open source software ecosystem for plasma physics.  ...  They will make base data structures compatible with open source packages for data science to enable future data science studies.  ...  We will similarly measure the changes in number of citations and acknowledgments to PlasmaPy research products, with the caveat that it is less common to cite or acknowledge software in plasma physics  ... 
doi:10.5281/zenodo.3244419 fatcat:4itxkahzcfbqfbitmlgpujrcl4 Cyberinfrastructure for Reproducibility and Collaboration in Computational Science

Victoria Stodden, Sheila Miguez, Jennifer Seiler
2015 Computing in science & engineering (Print)  
They also present ResearchCompendia, a project designed to facilitate reproducibility in computational science by persistently linking data and code that generated published findings to the article, and  ...  executing the code in the cloud to validate or certify those findings.  ...  The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.  ... 
doi:10.1109/mcse.2015.18 fatcat:u4apxi5aljaindwed2ezkw7d7i

Teaching and Learning About Science and Social Policy

Kenneth D. Benne, Max Birnbaum
1985 Bulletin of Science, Technology & Society  
Included is a discussion of six general learning objectives which should be met in a study of science and social policy.  ...  Section one offers an argument for teaching about science and social policy; surveys the sociology, politics, and history of contemporary science and technology; and identifies methodological problems  ...  However, decisions may include provisions for evaluating the chosen policy as it is tried in action and a commitment to -revise the policy in the light of these evalUations and of, new knowledge and experience  ... 
doi:10.1177/027046768500500303 fatcat:vwx26fkvxnabfcr34kio5rr64m

Report of the 2017 NSF SI2 PI Meeting

Ganesh Gopalakrishnan, Yung-Hsiang Lu, Matthew Knepley, Kyle Niemeyer, Matthew Turk, Nancy Wilkins-Diehr
2017 Figshare  
This report describes the 2017 NSF Software Infrastructure for Sustained Innovation (SI2) program PI workshop, held 21–22 February 2017 in Arlington, VA.  ...  (UTexas A, Math, stats, educ), Daniel (Move CS department in School of Computing and Info), Namu (Graduate student at NU, applied math), Michael Dixen (NCAR), Philip (curious), Utah State, Ashish (SRI  ...  -provenance for reproducibility), Jing (UNCC, CS, mech eng), Marco Bernardi (CalTech, applied physics -works with many physicists that need to dev professional code).  ... 
doi:10.6084/m9.figshare.4987013 fatcat:5rkhhknkybe3hkgckogl5ha25i

E-Business and Research Institutes: When Technologies, Platforms and Methods Converge to Meet Users' Needs [chapter]

Serena Pastore
2012 E-Business - Applications and Global Acceptance  
In astrophysics, for example, outreach could be enhanced only through future Internet technologies and the evolution of the web as a platform.  ...  Eucalyptus is commercial, open-source software that implements a cloud framework based on different open-source virtualization techniques such as Xen and KVM.  ... 
doi:10.5772/34558 fatcat:5cvfpsg7bjfptkmsxfo5uptt4i
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