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BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

Julien Allali, Cédric Saule, Cédric Chauve, Yves d'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aida Ouangraoua (+4 others)
2012 Advances in Bioinformatics  
The pairwise comparison of RNA secondary structures is a fundamental problem, with direct application in mining databases for annotating putative noncoding RNA candidates in newly sequenced genomes.  ...  An increasing number of software tools are available for comparing RNA secondary structures, based on different models (such as ordered trees or forests, arc annotated sequences, and multilevel trees)  ...  Acknowledgments This work was funded by the ANR (Agence Nationale pour la Recherche) project BRASERO (ANR-06-BLAN-0045).  ... 
doi:10.1155/2012/893048 pmid:22675348 pmcid:PMC3366197 fatcat:hesaapurlrdjphtkmftcyoybai