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Automatic Annotation of Web Services Based on Workflow Definitions [chapter]

Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton, Robert Stevens, Carole A. Goble
2006 Lecture Notes in Computer Science  
Semantic annotations of web services can facilitate the discovery of services, as well as their composition into workflows.  ...  In this paper, we show how information can be inferred about the semantics of operation parameters based on their connections to other (annotated) operation parameters within tried-and-tested workflows  ...  mistakes in existing annotations, based on a relatively small set of annotations.  ... 
doi:10.1007/11926078_9 fatcat:3neced6ievff3pabcsesrgp5kq

Automatic annotation of Web services based on workflow definitions

Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton, Robert Stevens, Carole A. Goble
2008 ACM Transactions on the Web  
Semantic annotations of web services can facilitate the discovery of services, as well as their composition into workflows.  ...  In this paper, we show how information can be inferred about the semantics of operation parameters based on their connections to other (annotated) operation parameters within tried-and-tested workflows  ...  in existing annotations based on a relatively small set of annotations.  ... 
doi:10.1145/1346337.1346239 fatcat:ha3nakwlvjbxrhrbtsqvyqr4rm

A Survey on Workflow Annotation & Composition Approaches

Florian Lautenbacher, Bernhard Bauer
2007 Extended Semantic Web Conference  
Nevertheless, the orientation differs: Some focus on semantic web services, others on Grid workflows or concentrate on business process management.  ...  In this paper we present a survey of available workflow annotation and composition approaches in all of these areas. We additionally categorize and compare them and describe future work.  ...  on Grid workflow orchestration and a semi-automatic mapping of abstract workflows onto concrete Grid services.  ... 
dblp:conf/esws/LautenbacherB07 fatcat:lawblhntrnew7kwabraw2qixda

Guided Composition of Tasks with Logical Information Systems - Application to Data Analysis Workflows in Bioinformatics [chapter]

Mouhamadou Ba
2013 Lecture Notes in Computer Science  
We aim at providing a tool that supports guided composition of semantic web services in bioinformatics, and that will support biologists in designing workflows for complex data analysis.  ...  The objective is to use semantics to describe bioinformatic tasks and to adapt the guided approach of Sewelis, a LIS semantic web tool, to the composition of tasks.  ...  Evaluation methodology GenOuest 4 is a bioinformatic platform that provides a large collection of tools and services for data analysis.  ... 
doi:10.1007/978-3-642-38288-8_47 fatcat:qvzfu62ytnbfdfdkehyqfr4n7y

Adapting the Galaxy Bioinformatics Tool to Support Semantic Web Service Composition

Rui Wang, Douglas Brewer, Shefali Shastri, Srikalyan Swayampakula, John A. Miller, Eileen T. Kraemer, Jessica C. Kissinger
2009 2009 Congress on Services - I  
As the availability of Web services for the biological domain increases, the need emerges for a Web service composition designer that is easy for biologists to use.  ...  We adapt a bioinformatics tool called Galaxy, to support semantic Web service composition. A semi-automatic approach for semantic Web service composition is utilized.  ...  ., D.B and R.W have been funded in whole or in part with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services  ... 
doi:10.1109/services-i.2009.114 dblp:conf/services/WangBSSMKK09 fatcat:yprbo6kdzzeizmtjw7rn6sgmlm

Improving the Reuse of ScientificWorkflows and Their By-products

Xiaorong Xiang, Gregory Madey
2007 IEEE International Conference on Web Services (ICWS 2007)  
to include in a workflow based on semantic and conceptual service definitions.  ...  Most current practical methodologies and workflow systems for service composition and workflow creation in e-Science pursue a semi-automatic way to allow users to discover and select appropriate services  ...  [6] presents an approach of using graph based solution to find similar concrete workflow on the web.  ... 
doi:10.1109/icws.2007.107 dblp:conf/icws/XiangM07 fatcat:jkcb72xdi5b6jhrqnhqpbguege

WS-BioZard: A Wizard for Composing Bioinformatics Web Services

Zhiming Wang, John A. Miller, Jessica C. Kissinger, Rui Wang, Douglas Brewer, Cristina Aurrecoechea
2008 2008 IEEE Congress on Services - Part I  
Recently, we have seen an increasing amount of interest in the composition of biological Web services in order to process a biological task.  ...  Web services in the biological domain.  ...  In comparison to business workflow, Web service composition is based on interactions in the context of a Service-Oriented Architecture (SOA).  ... 
doi:10.1109/services-1.2008.69 dblp:conf/services/WangMKWBA08 fatcat:guh4nyeirrbz7motu5vsyjbsti

Automatic Generation of Optimized Workflow for Distributed Computations on Large-Scale Matrices [chapter]

Farida Sabry, Abdelkarim Erradi, Mohamed Nassar, Qutaibah M. Malluhi
2014 Lecture Notes in Computer Science  
Our solution is based on automatic generation of BPEL workflows in order to coordinate long running, asynchronous and parallel invocation of services.  ...  This problem is particularly challenging in distributed environments such as campus clusters, grids or clouds on which the basic computation routines are offered as web/cloud services.  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the Qatar National Research Fund.  ... 
doi:10.1007/978-3-662-45391-9_6 fatcat:emdhhzkfwnh25kw4jm7ww4naj4

Towards Automated Service Composition Using Policy Ontology in Building Automation System

Son N. Han, Gyu Myoung Lee, Noel Crespi
2012 2012 IEEE Ninth International Conference on Services Computing  
Our proposed model can be a powerful tool to automatically compose services with associating meaningful policies.  ...  Automated service composition is critical for successfully implementing Building Automation Systems which facilitate Web services over physical devices.  ...  Many innovative architectures for automation systems based on the concept of Web services and Service-Oriented Computing have been proposed [2] .  ... 
doi:10.1109/scc.2012.42 dblp:conf/IEEEscc/HanLC12 fatcat:uffejkmrrbe7japufxgecs7vcy

Orange4WS Environment for Service-Oriented Data Mining

V. Podpecan, M. Zemenova, N. Lavrac
2011 Computer journal  
new features: simple use of web services as remote components that can be included into a data mining workflow; simple incorporation of relational data mining algorithms; a knowledge discovery ontology  ...  to describe workflow components (data, knowledge and data mining services) in an abstract and machine-interpretable way, and its use by a planner that enables automated composition of data mining workflows  ...  The Biomine project provides the Biomine search web service (more specifically, a web API based on the HTTP 94 V.  ... 
doi:10.1093/comjnl/bxr077 fatcat:rlq36cj62zgrdgth3s6mgmy2ie

WOODSS and the Web

C. B. Medeiros, J. Perez-Alcazar, L. Digiampietri, G. Z. Pastorello, A. Santanche, R. S. Torres, E. Madeira, E. Bacarin
2005 SIGMOD record  
The many research challenges faced by us at the moment include: the extension of this framework to the Web, following Semantic Web standards; providing means of discovering workflow components on the Web  ...  This paper discusses ongoing research on scientific workflows at the Institute of Computing, University of Campinas (IC -UNICAMP) Brazil.  ...  In particular, a new trend is to use them to solve the problem of automatic composition of Web Services [10] .  ... 
doi:10.1145/1084805.1084810 fatcat:wev24qalhfchnofrpdmmaf6q4u

GATE Teamware: a web-based, collaborative text annotation framework

Kalina Bontcheva, Hamish Cunningham, Ian Roberts, Angus Roberts, Valentin Tablan, Niraj Aswani, Genevieve Gorrell
2013 Language Resources and Evaluation  
This paper presents GATE Teamware-an open-source, web-based, collaborative text annotation framework.  ...  It is available as on-demand service on, as well as open-source for selfinstallation.  ...  We also wish to thank Matthew Petrillo, Jessica Baycroft, and Danica Damljanovic for running some of the distributed annotation experiments and allowing us to report the results here.  ... 
doi:10.1007/s10579-013-9215-6 fatcat:5ve7wowpxzeefpat5ei2rr6ttq

Semantic annotation of image processing tools

Bacem Wali, Bernard Gibaud
2012 Proceedings of the 2nd International Conference on Web Intelligence, Mining and Semantics - WIMS '12  
We propose an extension of the OntoNeuroLOG ontology to conceptualize shared processing tools and enable their semantic annotation.  ...  In the context of the NeuroLOG project, we designed the OntoNeuroLOG ontology as a cornerstone of our mediation layer. This contribution focuses on processing tools and is twofold.  ...  WSDL based on poorly formatted XML document are not expressive enough for the building of biomedical workflows by chaining multiple web services seamlessly and make them interoperable.  ... 
doi:10.1145/2254129.2254165 dblp:conf/wims/WaliG12 fatcat:plnd3phob5d5lgso5fbb3yuiym

SADI, SHARE, and the in silico scientific method

Mark D Wilkinson, Luke McCarthy, Benjamin Vandervalk, David Withers, Edward Kawas, Soroush Samadian
2010 BMC Bioinformatics  
Together, SADI and SHARE allow the semi-or fully-automatic discovery and pipelining of Semantic Web Services in response to ad hoc user queries.  ...  logical reasoning, but rather by analytical or annotative services.  ...  LM and BV conceived of and wrote the SHARE client system and the libraries that enable the decomposition of OWL classes into a Web Service workflow.  ... 
doi:10.1186/1471-2105-11-s12-s7 pmid:21210986 pmcid:PMC3040533 fatcat:6jcqblp46vaovhkxopgoesmmni

Semantically Linking and Browsing Provenance Logs for E-science [chapter]

Jun Zhao, Carole Goble, Robert Stevens, Sean Bechhofer
2004 Lecture Notes in Computer Science  
One specific kind of in silico experiment is a workflow.  ...  on semantic annotations associated with them.  ...  We also thank Mark Greenwood and Chris Wroe for their help during our annotation implementation process.  ... 
doi:10.1007/978-3-540-30145-5_10 fatcat:vewdrefolrddlkqitvyv2vg5qm
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