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Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata

MiHyun Jang, Tejal Patted, Yolanda Gil, Daniel Garijo, Varun Ratnakar, Jie Ji, Prince Wang, Aggie McMahon, Paul M Thompson, Neda Jahanshad
2017 CEUR Workshop Proceedings  
We present our work to date on automatically generating author lists and other portions of scientific papers for multi-institutional collaborations based on the metadata created to represent the people  ...  Scientific collaborations involving multiple institutions are increasingly commonplace. It is not unusual for publications to have dozens or hundreds of authors, in some cases even a few thousands.  ...  We also thank the many participants of the ENIGMA collaboration for their feedback and other contributions to this work.  ... 
pmid:30034319 pmcid:PMC6053267 fatcat:6bruu2q75fd4hhq75xigobllju

Multimedia on the web - editorial

Florian Stegmaier, Harald Kosch, Ralf Klamma, Mathias Lux, Ernesto Damiani
2013 Multimedia tools and applications  
Reports estimate a share of 40 % of peak network capacity dedicated to entertainment, mostly streaming video. A large share of this traffic originates from web-based services.  ...  Retrieval, annotation, validated and useful metadata, reliable and trusted services, and user interaction and context-based adaptation are still under discussion and issues to research.  ...  Here, a content-based method for semi-automatic organization of photo albums is introduced based on the analysis of how different users organize their own pictures.  ... 
doi:10.1007/s11042-013-1729-9 fatcat:xtt3hwugabcxfi56mpkdqjif2m

Semantic Search to Foster Scientific Findability: A Systematic Literature Review

Thiago Gottardi, Claudia Bauzer Medeiros, Julio Cesar Dos Reis
2021 Journal of Information and Data Management  
This article presents a systematic literature review of research efforts on mechanisms for supporting search for scientific papers, data and processes.  ...  One of the main goals of the Open Science movement is to leverage scientific collaboration through, among others, promoting the sharing and reuse of research outputs, such as publications, data and software  ...  that receive funding; "Institution" combines information and reports from institutions that produce scientific data or papers.  ... 
doi:10.5753/jidm.2021.1919 fatcat:pvsqmlmxijfgjciusxsnr623la

WindS@UP: The e-Science Platform for

Filipe Gomes, João Correia Lopes, José Laginha Palma, Luís Frölén Ribeiro
2014 Journal of Physics, Conference Series  
It is a collaborative platform that will provide a repository for experimental data and metadata. Additional data processing capabilities will be incorporated thus enabling in-situ data processing.  ...  Every resource in the platform is identified by a Uniform Resource Identifier (URI), enabling an unequivocally identification of the field(s) campaign(s) data sets and metadata associated with the data  ...  DataONE (Data Observation Network for Earth) is an infrastructure platform to promote multi-institutional, multinational, and interdisciplinary collaboration.  ... 
doi:10.1088/1742-6596/524/1/012006 fatcat:akpmg2zgmjao3drj7o7pvbjofi

Ontology-Based Searching Framework for Digital Shapes [chapter]

Riccardo Albertoni, Laura Papaleo, Marios Pitikakis, Francesco Robbiano, Michela Spagnuolo, George Vasilakis
2005 Lecture Notes in Computer Science  
Knowledge related to Shape Modelling is multi-faceted because of the complexity and heterogeneity of the involved resources and because different applications may cast different semantics on them.  ...  The paper describes the first results in the direction of developing an ontology for shape acquisition and reconstruction and its effective use in the Digital Shape Workbench, a searching framework for  ...  Odone of DISI, University of Genova.  ... 
doi:10.1007/11575863_111 fatcat:6lfy4f5azne33aciyql6lqgzru

Multi-level mining and visualization of scientific text collections

Pablo Accuosto, Francesco Ronzano, Daniel Ferrés, Horacio Saggion
2017 Proceedings of the 6th International Workshop on Mining Scientific Publications - WOSP 2017  
We present a system to mine and visualize collections of scientific documents by semantically browsing information extracted from single publications or aggregated throughout corpora of articles.  ...  In addition to the extraction and enrichment of documents with metadata (titles, authors, affiliations, etc), the deep analysis performed comprises semantic interpretation, rhetorical analysis of sentences  ...  to explore citation networks and contexts in addition to generate automatic citations-based multi-document summaries of a selected set of papers.  ... 
doi:10.1145/3127526.3127529 dblp:conf/jcdl/AccuostoRFS17 fatcat:u7e5niope5conmovgpjxslk3im

Open semantic annotation of scientific publications using DOMEO

Paolo Ciccarese, Marco Ocana, Tim Clark
2012 Journal of Biomedical Semantics  
Acknowledgements Development of Domeo was funded by a grant from the National Institute on Drug Abuse, National Institutes of Health, as part of the Neuroscience Information Framework; by a grant from  ...  This article has been published as part of Journal of Biomedical Semantics Volume 3 Supplement 1, 2012: Proceedings of the Bio-ontologies Special Interest Group 2011.  ...  With the Domeo tool, the Domeo Annotation Framework in general, and the collaborations currently in place, we expect to be able to publish large quantities of high quality annotations on scientific documents  ... 
doi:10.1186/2041-1480-3-s1-s1 pmid:22541592 pmcid:PMC3337259 fatcat:3ivqdirvdngqhjmuk7uualib4m

The OceanLink project

Tom Narock, Robert Arko, Suzanne Carbotte, Adila Krisnadhi, Pascal Hitzler, Michelle Cheatham, Adam Shepherd, Cynthia Chandler, Lisa Raymond, Peter Wiebe, Timothy Finin
2014 2014 IEEE International Conference on Big Data (Big Data)  
Today's scientific investigations are producing large numbers of scholarly products.  ...  collaboration, and begin to assess research contribution.  ...  INTRODUCTION Today's scientific investigations are producing large numbers of scholarly products.  ... 
doi:10.1109/bigdata.2014.7004347 dblp:conf/bigdataconf/NarockACKHCSCRWF14 fatcat:wpzdh44fxfexzpi6wpwqcegh3i

Visualizing collaboration networks implicit in digital libraries using OntoStarFish

J. Alfredo Sánchez, Ofelia Cervantes, Alfredo Ramos, María Auxilio Medina, Juan Carlos Lavariega, Eric Balam
2011 Proceeding of the 11th annual international ACM/IEEE joint conference on Digital libraries - JCDL '11  
OntoStarFish is based upon the use of multiple fisheye views that can be placed on top of starfields, dynamic scatter plots for which each axis is determined by a lightweight ontology of attributes associated  ...  from large collections of documents in digital libraries.  ...  portions of the networks of their interest.  ... 
doi:10.1145/1998076.1998117 dblp:conf/jcdl/SanchezCRNLB11 fatcat:6qipfbajqndjzfattltclmfgui

PARTHENOS White Paper I: Digital 3D Objects in Art and Humanities: challenges of creation, interoperability and preservation. White paper: A result of the PARTHENOS Workshop held in Bordeaux at Maison des Sciences de l'Homme d'Aquitaine and at Archeovision Lab. (France), November 30th - December 2nd, 2016 [article]

Pierre Alliez, Laurent Bergerot, Jean-François Bernard, Clotilde Boust, George Bruseker, Nicola Carboni, Mehdi Chayani, Matteo Dellepiane, Nicolo Dell'Unto, Bruno Dutailly, Hélène Gautier, Gabriele Guidi (+14 others)
2017 Zenodo  
Therefore, even if the focus is put on technical questions (formats, processing, and annotation), the White Paper also identifies the need to clarify the legal status of 3D objects, in order to facilitate  ...  With this White Paper, which gathers contributions from more than 25 experts of 3D imaging, modellng and processing, as well as professionals concerned with the interoperability and sustainability of research  ...  for the automatic processing pipelines for the on-site image-based modelling and semantic annotation propagation of Aïoli.  ... 
doi:10.5281/zenodo.3258219 fatcat:ef23em7i3ndxfjgngru2nuiase

Metadata Integration for an Archaeology Collection Architecture

Sivakumar Kulasekaran, Jessica Trelogan, Maria Esteva, Michael Johnson
2014 International Conference on Dublin Core and Metadata Applications  
This paper presents our work to develop a collection architecture, with metadata at its core, for a large and varied archaeological collection.  ...  This metadata, extracted automatically where possible, also fulfills a fundamental preservation role in case any part of the architecture should fail.  ...  The data were centralized there to round up and preserve disconnected portions of the collection so that active users could work collaboratively within a single, shared collection.  ... 
dblp:conf/dc/KulasekaranTEJ14 fatcat:wf44ioyqdzcwvcvlgltoz5y3ua

Linked Data for Network Science

Paul Groth, Yolanda Gil
2011 International Semantic Web Conference  
Network science is an emerging research area focused on developing general network-based approaches for studying phenomena across a range of fields from social science to biology.  ...  In this paper, we present a simplified approach for extracting networks from Linked Data.  ...  We would like to thank Varun Ratnakar for his feedback and assistance with this work. This research was funded in part by the National Science Foundation under grant number IIS-0948429.  ... 
dblp:conf/semweb/GrothG11 fatcat:qj7oam36vza5nji3uhklcsrsxa

The AIDA Dashboard: A Web Application for Assessing and Comparing Scientific Conferences

Simone Angioni, Angelo Salatino, Francesco Osborne, Diego Reforgiato Recupero, Enrico Motta
2022 IEEE Access  
In this paper, we introduce the AIDA Dashboard, a novel web application, developed in collaboration with Springer Nature, for analyzing and comparing scientific conferences.  ...  Scientific conferences are essential for developing active research communities, promoting the cross-pollination of ideas and technologies, bridging between academia and industry, and disseminating new  ...  analyzing and comparing conferences in Computer Science; • a pipeline for automatically generating several semantically-enriched analytics of scientific conferences which include two approaches for classifying  ... 
doi:10.1109/access.2022.3166256 fatcat:e6wkszklmjhmbp2wlijfvduh7e

VIStory: interactive storyboard for exploring visual information in scientific publications

Wei Zeng, Ao Dong, Xi Chen, Zhang-lin Cheng
2020 Journal of Visualization  
We harvest a new dataset of a large corpora of figures, using an automatic figure extraction method.  ...  The studies provide unprecedented insights on a variety of applications, e.g., literature review and collaboration analysis.  ...  Acknowledgements The authors wish to thank the experiment participants for their valuable feedbacks, the authors of SurVis for their open-source code, and the reviewers for their constructive comments.  ... 
doi:10.1007/s12650-020-00688-1 pmid:32837222 pmcid:PMC7429144 fatcat:iusk2y3syrbefpyapm5ct4zy3y

HPC and Grid Computing for Integrative Biomedical Research

Tahsin Kurc, Shannon Hastings, Vijay Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman (+4 others)
2009 The international journal of high performance computing applications  
In this paper, we look at some of these requirements using example research pattern templates.  ...  With the increasing availability of high-throughput and high-resolution instruments, the integrative biomedical research imposes many challenging requirements on software middleware systems.  ...  the National Science Foundation under Grants #CNS-0403342, #CNS-0426241, #CSR-0509517, #CSR-0615412, #ANI-0330612, #CCF-0342615, #CNS-0203846, #ACI-0130437, #CNS-0615155, #CNS-0406386, the Ohio Board of  ... 
doi:10.1177/1094342009106192 pmid:20107625 pmcid:PMC2811341 fatcat:5p26dv5uwnbqtjjhn3lnugmqly
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