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Automated 3D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back-Tracking [article]

Siqi Liu, Donghao Zhang, Yang Song, Hanchuan Peng, Weidong Cai
2017 bioRxiv   pre-print
The performance improvements comparing to the previous methods are mainly introduced by a more accurate estimation of the traced area and a novel confidence controlled back-tracking algorithm.  ...  The traced areas are labelled to avoid duplicated tracing. An online confidence score is computed to decide if a tracing iteration should be stopped and discarded from the final reconstruction.  ...  Acknowledgements We thank the BigNeuron community for providing the data and the discussions.  ... 
doi:10.1101/109892 fatcat:fr2kqi6ynvcezpaznlret6fcke

Whole-brain connectivity atlas of glutamatergic and GABAergic neurons in the mouse dorsal and median raphe nuclei

Zhengchao Xu, Zhao Feng, Mengting Zhao, Qingtao Sun, Lei Deng, Xueyan Jia, Tao Jiang, Pan Luo, Wu Chen, Ayizuohere Tudi, Jing Yuan, Xiangning Li (+3 others)
2021 eLife  
We used viral tracing combined with fluorescence micro-optical sectioning tomography to generate a comprehensive whole-brain atlas of inputs and outputs of glutamatergic and GABAergic neurons in the DR  ...  The glutamatergic and GABAergic neurons in the same raphe nucleus had divergent projection patterns with differences in critical brain regions.  ...  Automated 3-D Neuron Tracing With Precise Branch Erasing and Confidence Controlled Back Trackinghttps://doi.org/10.1109/TMI.2018.2833420 IEEE Transactions on Medical Imaging 37 :2441–2452.  ... 
doi:10.7554/elife.65502 pmid:34792021 pmcid:PMC8626088 fatcat:am727gkcofflno3alkn7xfafbi

Experience-dependent trends in CA1 theta and slow gamma rhythms in freely behaving mice

Brian J. Gereke, Alexandra J. Mably, Laura Lee Colgin
2018 Journal of Neurophysiology  
Come by the Plexon booth to see the latest tools for high channel neural recording, optogenetics, video based animal and behavior tracking, and offline data analysis.  ...  Neuralynx provides the most advanced electrophysiology solutions with intuitive acquisition and analysis systems -designed to meet the specific performance and data quality demands of each experiment.  ...  tracing and separation of neuronal trees.  ... 
doi:10.1152/jn.00472.2017 pmid:29070630 fatcat:p2qafk33bjb23nmk2bddfhsx6y

Compartment-specific tuning of hippocampal dendritic feature selectivity by intracellular Ca2+ release [article]

Justin K O'Hare, Yusuke Hirabayashi, Victoria L Hewitt, Heike Blockus, Miklos Szoboszlay, Sebi V Rolotti, Tristan C Geiller, Adrian Negrean, Vikas Chelur, Attila Losonczy, Franck Polleux
2021 bioRxiv   pre-print
We combined electroporation of single CA1 pyramidal neurons, simultaneous imaging of dendritic and somatic activity during spatial navigation, optogenetic place field induction, and acute genetic augmentation  ...  However, ICR has not been investigated in mammalian neurons in vivo.  ...  Villegas for assistance piloting an immunoassay to validate conditional knockout strategy, and Drs. A. Nelson and M. Rossi for their invaluable comments on the manuscript.  ... 
doi:10.1101/2021.09.27.460811 fatcat:hv4abhc7nvexxibiajlywtytuq

Amygdala Allostasis and Early Life Adversity: Considering Excitotoxicity and Inescapability in the Sequelae of Stress

Jamie L. Hanson, Brendon M. Nacewicz
2021 Frontiers in Human Neuroscience  
Early life adversity (ELA), such as child maltreatment or child poverty, engenders problems with emotional and behavioral regulation.  ...  In this review, we attempt to connect past research studies to new findings with animal models of cellular and neurotransmitter mediators of stress buffering to extreme fear generalization onto testable  ...  AUTHOR CONTRIBUTIONS Both authors contributed equally to the outlining, drafting, and writing of the manuscript.  ... 
doi:10.3389/fnhum.2021.624705 pmid:34140882 pmcid:PMC8203824 fatcat:7ha2ssu4xza63cb5uxjvorwgmq

30th Annual Computational Neuroscience Meeting: CNS*2021–Meeting Abstracts

2021 Journal of Computational Neuroscience  
Currently, most functional models of neural activity are based on firing rates, while the most relevant signals for inter-neuron communication are spikes.  ...  Kadakia with grants-1F32MH118700 and 1K99DC019397 and supporting T. Emonet with grant 2R01GM106189.  ...  O14 On the role of arkypallidal and prototypical neurons for neural synchronization in the basal ganglia Acknowledgements This work was supported by NIH-NIBIB (R01-EB027584).  ... 
doi:10.1007/s10827-021-00801-9 pmid:34931275 pmcid:PMC8687879 fatcat:evpmmfpaivgpxdqpive5xdgmwu

Intelligent Edge-Embedded Technologies for Digitising Industry [chapter]

Ovidiu Vermesan, Mario Diaz Nava
2022 Intelligent Edge-Embedded Technologies for Digitising Industry  
The series includes research monographs, edited volumes, handbooks and textbooks, providing professionals, researchers, educators, and advanced students in the field with an invaluable insight into the  ...  Topics range from the theory and use of systems involving all terminals, computers, and information processors to wired and wireless networks and network layouts, protocols, architectures, and implementations  ...  Acknowledgements Part of this work was partly funded by the German ministry of education and research (BMBF) under grant 16KIS1180K (FunKI) and 16KIS1012 (IRLG).  ... 
doi:10.13052/rp-9788770226103 fatcat:mgz277pmkbetvbpoaomoktzgzi

28th Annual Computational Neuroscience Meeting: CNS*2019

2019 BMC Neuroscience  
Some efforts use neurons with intrinsic rich dynamics as observed in several experimental works of CPGs [2, 3].  ...  Activity from both the LP and PD neurons of the stomatogastric ganglion of a crab was recorded using intracellular electrodes and sent to a computer through a DAQ device.  ...  branches and soma with thin branches.  ... 
doi:10.1186/s12868-019-0538-0 fatcat:3pt5qvsh45awzbpwhqwbzrg4su

The Fourth Paradigm – Data-Intensive Scientific Discovery [chapter]

Tony Hey
2012 Communications in Computer and Information Science  
The F o u r T H Data-In t e n s I v e scIen t I f I c DIs c o v e r y P a r a d i g m MiCroSoF T reSe arCH REDMOND, WASHINGTON  ...  And, of course, we thank Jim Gray, for inspiring us. ACKN OWLE DG M E NTS  ...  We also thank our families and colleagues for their support during the intensive editorial process.  ... 
doi:10.1007/978-3-642-33299-9_1 fatcat:etue636ubrandga5corvkx3d7u

Modelling of consciousness and interpretation of quantum mechanics [article]

Éric Merle
2018 arXiv   pre-print
It provides a model that is compatible with the assumptions of the first part and consistent with our daily conscious experience.  ...  So, when the mind measures the random part of certain neurons in the brain, he goes himself within each of these possibilities.  ...  I thank them for their attentive and benevolent listening. Their comments and questions led me to strengthen several ideas.  ... 
arXiv:1807.07669v1 fatcat:t6ua4owbdjdp5jor4snfyelqmy

Deliverable 5.1 Preliminary evaluation results and plan for proof-of-concept demonstrations

Michele Gucciardo, Marco Fiore, Ginés García Avilés, Antonio Bazco Nogueras, Gabriele Baldoni, Ivan Páez, Inmaculada Ayala, Danny De Vleeschauwer, Chia-Yu Chang, Paola Soto, Nina Slamnik, Miguel Camelo (+8 others)
2022 Zenodo  
It presents the validation activities, performance evaluations and functional assessment tests of all the NI-solutions developed in WP3 and WP4 to date.  ...  The performance evaluation aims at meeting 9 target KPIs in well-defined scenarios, which are measured and assessed by developing 7 evaluations.  ...  We chose a neural network with an input layer of 2000 neurons and an output layer of as many neurons as there are traffic classes. We considered 3 hidden layers with 40 neurons each.  ... 
doi:10.5281/zenodo.6801831 fatcat:rw77sldj3bf7lj5napxfxrj5mm

Artificial Intellgence – Application in Life Sciences and Beyond. The Upper Rhine Artificial Intelligence Symposium UR-AI 2021 [article]

Karl-Herbert Schäfer
2021 arXiv   pre-print
) and the University of Applied Sciences and Arts Northwestern Switzerland.  ...  Topics of the conference are applications of Artificial Intellgence in life sciences, intelligent systems, industry 4.0, mobility and others.  ...  Wetzel and T. Iraki for helpful comments and discussion.  ... 
arXiv:2112.05657v1 fatcat:wdjgymicyrfybg5zth2dc2i3ni

Artificial Intelligence [article]

Denis Rothman
2018 Zenodo  
In May 2017, Google revealed AutoML, an automated machine learning system that could create an artificial intelligence solution without the assistance of a human engineer.  ...  IBM Cloud and Amazon Web Services (AWS) offer machine learning solutions that do not require AI developers.  ...  X[2] an X [3] come back as false as well.  ... 
doi:10.5281/zenodo.5599649 fatcat:vyqr3zzw5rfzpp3zifezw7uzxq

Classifying Infected and Uninfected Red Blood Cell Images for Malaria Detection using Convolutional Neural Networks

2021 American Journal Of Advanced Computing  
III FALL-DETECTION RESULTS OF K-NN ALGORITHM Training on D Training on D' Precision Recall F1-score Support Precision Recall F1-score Support Standing 0.8 5 0.7 0 0.77 1511 0.71  ...  It is able to detect falls with 67% precision and 69% recall, although it has attained higher values for standing activity. Also, it has shown similar results on reduced training set D'.  ... 
doi:10.15864/ajac.2107 fatcat:cnqj7hzy6nbvlobtmrujhoy4bu

29th Annual Computational Neuroscience Meeting: CNS*2020

2020 BMC Neuroscience  
by visual experience, and (iii) how patterns of neural activity in the zebrafish brain develop to facilitate precisely targeted hunting behaviour.  ...  Deep RL offers a rich framework for studying the interplay among learning, representation and decision-making, offering to the brain sciences a new set of research tools and a wide range of novel hypotheses  ...  Institute (Challenge grants to SJ), the Research Corporation for Science Advancement (a Cottrell SEED Award to TV), and the German Research Foundation (DFG grant #ME 1535/7-1 to RM), and the Foundation  ... 
doi:10.1186/s12868-020-00593-1 pmid:33342424 fatcat:edosycf35zfifm552a2aogis7a
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