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Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

Dietrich Rebholz-Schuhmann, Antonio Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov (+25 others)
2011 Journal of Biomedical Semantics  
automatic text mining solutions, the first version of the Silver Standard Corpus (SSC-I).  ...  This corpus has been used for the First CALBC Challenge asking the participants to annotate the corpus with their text processing solutions.  ...  Authors contributions DRS and AJY have prepared the manuscript. AJY, CL, SK, and IL have prepared annotated corpora and contributed to the analysis of the PPs and CPs annotations.  ... 
doi:10.1186/2041-1480-2-s5-s11 pmid:22166494 pmcid:PMC3239301 fatcat:gxulmvxdcfgxneh7surgbv2e4u

Monitoring named entity recognition: the League Table

Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Antonio Yepes, Ian Lewin
2013 Journal of Biomedical Semantics  
Conclusion: The League Table enables the evaluation of NER solutions in a standardized infrastructure and monitors the results long-term.  ...  Upon submission of the annotated corpus the user has to describe the specification of the used solution and then uploads the annotated corpus for evaluation.  ...  Acknowledgements This work was funded by the EU Support Action grant 231727 ("CALBC", www. under the 7th EU Framework Programme (ICT 2007.4.2).  ... 
doi:10.1186/2041-1480-4-19 pmid:24034148 pmcid:PMC4015903 fatcat:blv6w5lrfba7ti5vzcuw67g55a

Transfer learning for biomedical named entity recognition with neural networks [article]

John M Giorgi, Gary Bader
2018 bioRxiv   pre-print
An alternative to GSCs are silver-standard corpora (SSCs), which are generated by harmonizing the annotations made by several automatic annotation systems.  ...  A fundamental task is the recognition of biomedical named entities in text (BNER) such as genes/proteins, diseases, and species.  ...  Acknowledgements We gratefully acknowledge the support of NVIDIA Corporation with the donation of the Titan Xp GPU used for this research.  ... 
doi:10.1101/262790 fatcat:birvfsyz5fcbnd4imxlgduhfwa

Towards reliable named entity recognition in the biomedical domain

2019 Bioinformatics  
We measure the effect that each strategy has when training/testing on the same corpus ('in-corpus' performance) and when training on one corpus and evaluating on another ('out-of-corpus' performance),  ...  The maximal increase we identified combines multi-task learning and variational dropout, which boosts out-of-corpus performance by 10.75%.  ...  We also gratefully acknowledge the support of NVIDIA Corporation with the donation of the Titan Xp GPU used for this research.  ... 
doi:10.1093/bioinformatics/btz504 pmid:31218364 pmcid:PMC6956779 fatcat:bf5x42cyw5ejppkpajjkuzwytu

Knowledge-driven entity recognition and disambiguation in biomedical text [article]

Amy Siu, Universität Des Saarlandes, Universität Des Saarlandes
The method first captures the entities expressed in a corpus as latent representations that comprise in-KB and OOKB entities alike before performing entity disambiguation. iv Kurzfassung vii  ...  The first contribution is a fast dictionary lookup method for entity recognition that maximizes throughput while balancing the loss of precision and recall.  ...  CALBC Challenge [162] uses the CALBC silver standard [159] as its evaluation corpus.  ... 
doi:10.22028/d291-26790 fatcat:twz6ditmfzgldghwk6cia3gle4


Olivier Weller, Paris, Comité De Rédaction, Roxana-Gabriela Curcă, Marius Alexianu, Neculai Bolohan, Octavian Bounegru, Vasile Cotiugă, Marius Alexianu, Olivier Weller, Robin Brigand, Roxana
2014 unpublished
The first two decades presents the extreme limits of the index values: the lowest value in the first decade -88.63, and the highest value in the second decade -93.42.  ...  second half of the first century AD, in the context of flourishing commercial relations 22 .  ...  Some of them, like the "Religiöse Individualisierung in historischer Perspektive" (second phase: 2013-2017) have already a great echo in the international literature 11 .  ... 

25th European Association of Archaeologists Annual Meeting (Bern, Switzerland, 2019) [article]

Carlo Rindi Nuzzolo
Invited speech on the Circulating Artefacts project at the British Museum in the session "Illegal Obtaining and Trade of Archaeological Artefacts: status quo and counteraction".  ...  Who will be responsible for the scientific analysis of archaeological sites and artefacts? Are digital solutions or virtual reality going to replace standard mediation methods in archaeology?  ...  OXBOW/EAA19 FIRST FARMERS OF THE CARPATHIAN BASIN: CHANGING PATTERNS IN SUBSISTENCE, RITUAL AND MONUMENTAL FIGURINES By Eszter Bánffy £35.00 £28.00 HERITAGE UNDER PRESSURE THREATS AND SOLUTIONS  ... 
doi:10.26180/5e169ee78f3da fatcat:wdnh2rvyivhhjmxpmwwaxvc3r4