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ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

Patrice Baa-Puyoulet, Nicolas Parisot, Gérard Febvay, Jaime Huerta-Cepas, Augusto F. Vellozo, Toni Gabaldón, Federica Calevro, Hubert Charles, Stefano Colella
2016 Database: The Journal of Biological Databases and Curation  
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods.  ...  In this context, we present here ArthropodaCyc, a dedicated BioCyc collection of databases using the Cyc annotation database system (CycADS), allowing researchers to perform reliable metabolism comparisons  ...  Acknowledgements The authors would like to thanks: Daniel Lawson (European Bioinformatics Institute, Cambridge, UK) for the hyperlinks to/from VectorBase (https://www.vectorbase.org/); Fabrice Legeai and  ... 
doi:10.1093/database/baw081 pmid:27242037 pmcid:PMC5630938 fatcat:dpq2cagvujb3hm2s7dg2xmjihe

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Kristen A. Panfilio, Iris M. Vargas Jentzsch, Joshua B. Benoit, Deniz Erezyilmaz, Yuichiro Suzuki, Stefano Colella, Hugh M. Robertson, Monica F. Poelchau, Robert M. Waterhouse, Panagiotis Ioannidis, Matthew T. Weirauch, Daniel S. T. Hughes (+71 others)
2019 Genome Biology  
Building upon recent sequencing of hemipteran pests such as phloem-feeding aphids and blood-feeding bed bugs, we present the genome sequence and comparative analyses centered on the milkweed bug Oncopeltus  ...  fasciatus, a seed feeder of the family Lygaeidae.  ...  We also thank Oliver Niehuis (Albert Ludwig University, Freiburg, Germany) and Alexander Klassmann (University of Cologne, Germany) for discussions on k-mer and gene structure analyses, respectively, Sarah  ... 
doi:10.1186/s13059-019-1660-0 pmid:30935422 pmcid:PMC6444547 fatcat:srfxz2fihfbk7ffoqpjg4fhwfu

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Nicolas Parisot, Carlos Vargas-Chávez, Clément Goubert, Patrice Baa-Puyoulet, Séverine Balmand, Louis Beranger, Caroline Blanc, Aymeric Bonnamour, Matthieu Boulesteix, Nelly Burlet, Federica Calevro, Patrick Callaerts (+35 others)
2021 BMC Biology  
S. oryzae has undergone a high gene expansion rate, when compared to other beetles.  ...  Results We sequenced the Sitophilus oryzae genome using a combination of short and long reads to produce the best assembly for a Curculionidae species to date.  ...  We compared S. oryzae metabolism to that of other arthropods available in the ArthropodaCyc [110] collection and we explored the metabolic exchanges between weevils and their endosymbionts.  ... 
doi:10.1186/s12915-021-01158-2 pmid:34749730 pmcid:PMC8576890 fatcat:u7aigt3j4fcvpg4wyxwevkxafu