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Archiving next generation sequencing data

Martin Shumway, Guy Cochrane, Hideaki Sugawara
<span title="2009-12-03">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
the DNA Data Bank of Japan (DDBJ), have established the Sequence Read Archive (SRA) to provide the scientific community with an archival destination for next generation data sets.  ...  Next generation sequencing platforms are producing biological sequencing data in unprecedented amounts.  ...  out in 2007 to design a successor archive to accommodate the next generation sequencing platforms (2).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkp1078">doi:10.1093/nar/gkp1078</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19965774">pmid:19965774</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2808927/">pmcid:PMC2808927</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zhs53qq7pbdcbgc4oxwkxuwxqe">fatcat:zhs53qq7pbdcbgc4oxwkxuwxqe</a> </span>
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pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive [article]

Saket Choudhary
<span title="2019-03-16">2019</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
AbstractNCBIs Sequence Read Archive (SRA) is the primary archive of next-generation sequencing datasets.  ...  SRA makes metadata and raw sequencing data available to the research community to encourage reproducibility, and to provide avenues for testing novel hypotheses on publicly available data.  ...  Obtaining metadata and raw data from NCBI's Sequencing Read Archive (SRA) [4] is often the first step towards re-analyzing public next-generation sequencing datasets to compare them to private data or  ... 
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pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive

Saket Choudhary
<span title="2019-04-23">2019</span> <i title="F1000 ( Faculty of 1000 Ltd)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
The NCBI Sequence Read Archive (SRA) is the primary archive of next-generation sequencing datasets.  ...  SRA makes metadata and raw sequencing data available to the research community to encourage reproducibility and to provide avenues for testing novel hypotheses on publicly available data.  ...  Obtaining metadata and raw data from the NCBI Sequence Read Archive (SRA) 4 is often the first step towards reanalyzing public next-generation sequencing datasets in order to compare them to private data  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.18676.1">doi:10.12688/f1000research.18676.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31114675">pmid:31114675</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6505635/">pmcid:PMC6505635</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/c3xt7xuqurabdmha3yyaracff4">fatcat:c3xt7xuqurabdmha3yyaracff4</a> </span>
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DDBJ launches a new archive database with analytical tools for next-generation sequence data

Eli Kaminuma, Jun Mashima, Yuichi Kodama, Takashi Gojobori, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
<span title="2009-10-22">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Moreover, a new archive for sequencing data from next-generation sequencers, the 'DDBJ Read Archive' (DRA), was launched.  ...  A few highlighted data releases from DDBJ were the complete genome sequence of an endosymbiont within protist cells in the termite gut and Cap Analysis Gene Expression tags for human and mouse deposited  ...  ACKNOWLEDGEMENTS We gratefully acknowledge the support of all members of DDBJ for data collection, annotation and release and for software development.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkp847">doi:10.1093/nar/gkp847</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19850725">pmid:19850725</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2808917/">pmcid:PMC2808917</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2yd7lgivcjdunjkd66kshsexim">fatcat:2yd7lgivcjdunjkd66kshsexim</a> </span>
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Sanger and Next-Generation Sequencing data for characterization of CTL epitopes in archived HIV-1 proviral DNA

Camille Tumiotto, Lionel Riviere, Pantxika Bellecave, Patricia Recordon-Pinson, Alice Vilain-Parce, Gwenda-Line Guidicelli, Hervé Fleury, Francesca Ceccherini-Silberstein
<span title="2017-09-21">2017</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
In order to process big data generated by Next-Generation Sequencing (NGS) of the DNA of HIV-infected patients, we have developed a software package called TutuGenetics.  ...  One alternative is to gather as many data as possible from a large number of patients on their HIV-1 proviral archived epitope variants, taking into account their genetic background to select the best  ...  The present study concerned the sequence analysis of archived HIV-1 DNA using Sanger technology and Next-Generation Sequencing (NGS).  ... 
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DDBJ Sequence Read Archive / DDBJ Omics Archive

Yuichi Kodama, Yuichi Kodama, Satoshi Saruhashi, Eli Kaminuma, Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura
<span title="2010-10-22">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfizkffjyzhple2sfhgk46dk2e" style="color: black;">Nature Precedings</a> </i> &nbsp;
Next generation sequencing platforms are producing biological sequencing data in unprecedented amounts.  ...  The DRA is intended to be a repository for data from the primary analysis phase of next-generation sequencing.  ...  For next-generation sequencing data, the DOR will register corresponding raw data to the DRA instead of submitters.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2010.5085">doi:10.1038/npre.2010.5085</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ruwhzll6abag5j22fyddp7xufe">fatcat:ruwhzll6abag5j22fyddp7xufe</a> </span>
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DDBJ Sequence Read Archive / DDBJ Omics Archive

Yuichi Kodama, Yuichi Kodama, Satoshi Saruhashi, Eli Kaminuma, Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura
<span title="2010-10-22">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfizkffjyzhple2sfhgk46dk2e" style="color: black;">Nature Precedings</a> </i> &nbsp;
Next generation sequencing platforms are producing biological sequencing data in unprecedented amounts.  ...  The DRA is intended to be a repository for data from the primary analysis phase of next-generation sequencing.  ...  For next-generation sequencing data, the DOR will register corresponding raw data to the DRA instead of submitters.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2010.5085.1">doi:10.1038/npre.2010.5085.1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/morhnmfvira53mouhhienzgx2e">fatcat:morhnmfvira53mouhhienzgx2e</a> </span>
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The sequence read archive: explosive growth of sequencing data

Y. Kodama, M. Shumway, R. Leinonen
<span title="2011-10-18">2011</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
New generation sequencing platforms are producing data with significantly higher throughput and lower cost.  ...  THE SEQUENCE READ ARCHIVE Massively parallel next-generation sequencing platforms are revolutionizing life sciences.  ...  Functional genomics studies using next-generation sequencing (e.g.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkr854">doi:10.1093/nar/gkr854</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22009675">pmid:22009675</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3245110/">pmcid:PMC3245110</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rntew4uuynashk2y2ugo67ph7q">fatcat:rntew4uuynashk2y2ugo67ph7q</a> </span>
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The Sequence Read Archive

R. Leinonen, H. Sugawara, M. Shumway
<span title="2010-11-09">2010</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data archive,  ...  THE SEQUENCE READ ARCHIVE The Sequence Read Archive (SRA) is an international public archival resource for next-generation sequence data established under the guidance of the International Nucleotide Sequence  ...  cmd=show&f=software&m=software&s=software) for storing and exchanging all next-generation sequence data.  ... 
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Improvements to services at the European Nucleotide Archive

Rasko Leinonen, Ruth Akhtar, Ewan Birney, James Bonfield, Lawrence Bower, Matt Corbett, Ying Cheng, Fehmi Demiralp, Nadeem Faruque, Neil Goodgame, Richard Gibson, Gemma Hoad (+17 others)
<span title="2009-11-10">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The European Nucleotide Archive (ENA; http://www .ebi.ac.uk/ena) is Europe's primary nucleotide sequence archival resource, safeguarding open nucleotide data access, engaging in worldwide  ...  Capillary and next-generation sequence traces are included in ENA-Reads (Table 2 ). Capillary traces are stored in the Trace Archive and next-generation sequences in the SRA.  ...  long-term storage of the next-generation sequence traces.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkp998">doi:10.1093/nar/gkp998</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19906712">pmid:19906712</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2808951/">pmcid:PMC2808951</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7hx2okpxtbdcvpeoabj2q5emhe">fatcat:7hx2okpxtbdcvpeoabj2q5emhe</a> </span>
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Petabyte-scale innovations at the European Nucleotide Archive

G. Cochrane, R. Akhtar, J. Bonfield, L. Bower, F. Demiralp, N. Faruque, R. Gibson, G. Hoad, T. Hubbard, C. Hunter, M. Jang, S. Juhos (+15 others)
<span title="2009-01-01">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
We present here our new repository for next generation sequence data, a brief summary of contents of the ENA and provide details of major developments to submission pipelines, high-throughput rule-based  ...  The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/embl), comprising the EMBL Nucleotide Sequence Database and the Ensembl Trace Archive, has identified challenges in the storage, movement, analysis  ...  ARCHIVING NEXT GENERATION READ DATA Next generation sequencing technologies yield unprecedented data volumes through a combination of highthroughput microfluidics and novel sequencing chemistry.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkn765">doi:10.1093/nar/gkn765</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18978013">pmid:18978013</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2686451/">pmcid:PMC2686451</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xzwl3cvkjnarxbbbowzbnhazpi">fatcat:xzwl3cvkjnarxbbbowzbnhazpi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170717085823/https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/nar/37/suppl_1/10.1093/nar/gkn765/2/gkn765.pdf?Expires=1500375503&amp;Signature=e0ZGgODu~6PCo71nYoclrZpqpH5tRJvzoBYGmfNkrXL~a5Ecyf9aGx1vXFux7sKFPjyRrLHXOy3miFGRJ6Hw-SWuNrziVdhIGi0j20rQ25r~PRizdpbyJS-~GUi88iZqB-W-o9-zLJJioq9PNJsBtIXOeOiztnlOJj8lUZwuItdbLl19QeIRiEWbXjDB8jg49dE8o~0bhBpMFaCotVWqS6crFbbC-SIjkDXvPaSyC4exAdcC4sfwTmp8kuUpuiKa4S~Xl6s243ASK2xjk-xIYTxE-3STuofYtnd4ms0FDj-4zyFrT2VjE7dnI6iptgpgG28VBsMSkKXBtJbH69-w5g__&amp;Key-Pair-Id=APKAIUCZBIA4LVPAVW3Q" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0f/8c/0f8c062db9fbc815e404e8f5c65b2878aeb9402f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkn765"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686451" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The International Nucleotide Sequence Database Collaboration

G. Cochrane, I. Karsch-Mizrachi, Y. Nakamura
<span title="2010-11-23">2010</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
While growth in sequence data volumes comes no longer as a surprise to INSDC partners, the uptake of next-generation sequencing technology by mainstream science that we have witnessed in recent years brings  ...  Under the International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc. org), globally comprehensive public domain nucleotide sequence is captured, preserved and presented.  ...  ) and raw next-generation-sequence data.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkq1150">doi:10.1093/nar/gkq1150</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21106499">pmid:21106499</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3013722/">pmcid:PMC3013722</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pxrcwpdacjekxar5ukk4qqhugm">fatcat:pxrcwpdacjekxar5ukk4qqhugm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190226130550/http://pdfs.semanticscholar.org/717d/f33c0cb7eb609e098f91e85d536bc4125442.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/71/7d/717df33c0cb7eb609e098f91e85d536bc4125442.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkq1150"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013722" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The International Nucleotide Sequence Database Collaboration

Y. Nakamura, G. Cochrane, I. Karsch-Mizrachi
<span title="2012-11-24">2012</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc.org), one of the longest-standing global alliances of biological data archives, captures, preserves and provides comprehensive  ...  public domain nucleotide sequence information.  ...  Data volume in base pairs of assembled sequence (whole genome shotgun methods and others) and raw next-generation-sequence data, excluding the Trace Archive (raw data from capillary sequencing platforms  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gks1084">doi:10.1093/nar/gks1084</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23180798">pmid:23180798</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3531182/">pmcid:PMC3531182</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dqelv6wmgnc25mqbptl73hxqum">fatcat:dqelv6wmgnc25mqbptl73hxqum</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170716164243/https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/nar/41/D1/10.1093/nar/gks1084/2/gks1084.pdf?Expires=1500316963&amp;Signature=Bi89XOLhfYfT8kkc0YDeb-a-lyMvmLghVhH34yMZYFcImR7oc2faKsiv3NUF4wRIknwl5tVH9CqKmCD3~xiv6mOzrCwd4wD~eZ4s9tJF6M4H3jZbBGYYhOUUlgH96xsGTo50vG4OIpT1rbbyxZosfLhc2kAvZyAJ6DAMy76qCEV8Cyf3iHFrB4HlCZ43J2jBidT~RyEftgBOLfTrKxztgzjckx8hl1Hn3aGgVLjnSSy1YLxUGza9FOX23sGU5cQBfEOhjqzgxFLofJU3zVCJCfKWxgD~PYNFVvJGpwecToGS2h6oYYl4GJFWPiVY~NHrXqBdOioOsGUQeEXxy22duw__&amp;Key-Pair-Id=APKAIUCZBIA4LVPAVW3Q" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/78/cb/78cbf0d28198ad4d558bf180d4e8802a3d508a7f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gks1084"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531182" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The European Nucleotide Archive

R. Leinonen, R. Akhtar, E. Birney, L. Bower, A. Cerdeno-Tarraga, Y. Cheng, I. Cleland, N. Faruque, N. Goodgame, R. Gibson, G. Hoad, M. Jang (+9 others)
<span title="2010-10-23">2010</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The ENA consists of three main databases: the Sequence Read Archive (SRA), the Trace Archive and EMBL-Bank.  ...  The objective of ENA is to support and promote the use of nucleotide sequencing as an experimental research platform by providing data submission, archive, search and download services.  ...  SUBMISSIONS OF RAW DATA FROM NEXT GENERATION PLATFORMS The SRA accepts sequence submissions from next-generation sequencing platforms.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkq967">doi:10.1093/nar/gkq967</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20972220">pmid:20972220</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3013801/">pmcid:PMC3013801</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pla5imfirvedhhclz3qcbuvgge">fatcat:pla5imfirvedhhclz3qcbuvgge</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190227010412/http://pdfs.semanticscholar.org/87d0/b2e8f7583dd50912bd84335bbe79e4b9162f.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/87/d0/87d0b2e8f7583dd50912bd84335bbe79e4b9162f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkq967"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013801" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Interesting times for microarray expression profiling

Y. Hey, S. D. Pepper
<span title="2009-05-01">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/db7gv4nqurbrhk7jywtr3wbcme" style="color: black;">Briefings in Functional Genomics &amp; Proteomics</a> </i> &nbsp;
Recently it has also become possible to generate expression data from formalin-fixed paraffin-embedded archival samples.  ...  Next Generation Sequencers are still in their infancy as a platform for expression profiling.  ...  and annotation is updated will we be able to make full use of the data generated by Next Generation Sequencing.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bfgp/elp012">doi:10.1093/bfgp/elp012</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19474127">pmid:19474127</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zpbgzbgc2vdozis64kav74ephy">fatcat:zpbgzbgc2vdozis64kav74ephy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180730053735/https://watermark.silverchair.com/elp012.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAZswggGXBgkqhkiG9w0BBwagggGIMIIBhAIBADCCAX0GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMYHw60xnmfGiVpLE2AgEQgIIBTqgBha-_bFXFlNgHPQwrKmrMWLFiBvPaER0cm-d5RYyqs_nxAeMz7zWpToqDC-hv_sdnQjddlo4EbR0oh62-mqnMD4WjKGRY7a5GDZrhrIOIsXDmq1GVDBCGSmOFBxNdM_d0yh_cOH2DyT1_1aIBdK7fOOyo22dEXI7FJP6cSDHvUJ5o7LdOMysEx1mHb2YdrYZ_AY62z_E7LUlC0HPdiMESsaNzi3aYGJsJetM9eizv9seOa-Z61jYhWXzYW9RjRt46gZ6mLTeonA0eMkM1c87QPGfiWG3Oj_DUzK0B8DymhojRVJwtvGu2RQJK6eOi7aEq57OBTcR2yUOulGUCxdYN_YEm1QYT3HUl75ctRRV2WBA0iGTFFvY4NDwD7NXaxrGnwPVf-IG6tgITjHzyualFt4mj-QOWCMgXSpOmiQP8nyMa9_Xsmhtcs0e1cE8" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5a/5a/5a5aa3e4005a27242b5cef77202e90a7e477d9b4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bfgp/elp012"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>
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