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BBX24 Interacts with DELLA to Regulate UV-B-Induced Photomorphogenesis in Arabidopsis thaliana
2022
International Journal of Molecular Sciences
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Abstracts: UV-B radiation, sensed by the photoreceptor UVR8, induces signal transduction for plant photomorphogenesis [...] ...
Institutional Review Board Statement: Not applicable.
Informed Consent Statement: Not applicable. ...
We are grateful to Paul Giller from University College Cork, Ireland, for reviewing and suggesting editorial changes of an earlier version of the manuscript. ...
doi:10.3390/ijms23137386
pmid:35806395
pmcid:PMC9266986
fatcat:xbmdm74yrzesdctm6fwwx7cgii
Arachis hypogea gene expression atlas (AhGEA) for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications
2020
Plant Biotechnology Journal
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Our in-depth analysis of the global transcriptome sheds light into complex regulatory networks namely, gravitropism and photomorphogenesis, seed development, allergens and oil biosynthesis in groundnut ...
Approximately 480 million paired-end filtered reads were generated followed by identification of 81,901 transcripts from an early maturing, high-yielding, drought tolerant groundnut variety, ICGV 91114 ...
ICRISAT is a member of CGIAR Consortium. ...
doi:10.1111/pbi.13374
pmid:32167667
fatcat:s5uupwiyzbf77fg47ppd77e45m
De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum
2014
PLoS ONE
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Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis ...
Differential gene expression analyses revealed 22% more light up-regulated and 35% more light down-regulated transcripts in the G3116 transcriptome compared to DV92. ...
and potential SNPs and SSRs, which can be used to explore Triticeae genome diversity, co-expression networks involved in photomorphogenesis and to develop stochastic and metabolic networks [22, 48, 49 ...
doi:10.1371/journal.pone.0096855
pmid:24821410
pmcid:PMC4018402
fatcat:eohusquf7vfbflauwpwlba43zy
Third-generation sequencing and metabolome analysis reveal candidate genes and metabolites with altered levels in albino jackfruit seedlings
2021
BMC Genomics
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Analysis of the TF–DEG network suggested that basic helix-loop-helix (bHLH) and MYB-related TFs regulate the expression of genes involved in carbon fixation and energy metabolism to affect light responses ...
or photomorphogenesis and normal growth. ...
Acknowledgements We thank the people in the School of Forestry, Hainan University who helped us find the mutant plants. ...
doi:10.1186/s12864-021-07873-y
fatcat:pftfwgjdajey3espbtei64akcq
Etiolated Seedling Development Requires Repression of Photomorphogenesis by a Small Cell-Wall-Derived Dark Signal
2017
Current Biology
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Etiolated growth in darkness or the irreversible transition to photomorphogenesis in the light engages alternative developmental programs operating across all organs of a plant seedling. ...
In combination with genetic data, we propose a model of spatiotemporally separated photoreceptive and signal-responsive cell types, which contain overlapping subsets of the regulatory network of light-dependent ...
Germany) for multielement analysis and the Paul Scherrer Institut (Villigen, Switzerland) and the European Synchrotron Radiation Source (ESRF, Grenoble, France) for beamtime at the microXAS beamline of ...
doi:10.1016/j.cub.2017.09.063
pmid:29103938
fatcat:z4loin5vlfbg3fyy66x26ncqfi
Genome-wide association study (GWAS) of leaf cuticular wax components in Camelina sativa identifies genetic loci related to intracellular wax transport
2019
BMC Plant Biology
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or Golgi network-mediated transport. ...
low-input requirements in agriculture practices. ...
Acknowledgements Mention of trade names or commercial products in this article is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U. ...
doi:10.1186/s12870-019-1776-0
fatcat:te7iq4vmqrhuvcrtig7ezpnley
Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in Brassica rapa, B. oleracea, and B. napus and Their Expression Profiling in B. rapa in Response to Multiple Hormones and Abiotic Stresses
2021
International Journal of Molecular Sciences
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Light-responsive cis-regulatory elements were detected in many of the BBX gene promoters. ...
A whole-genome identification, characterization, and evolutionary analysis (synteny and orthology) of the B-box gene families in the diploid species B. rapa (A genome) and B. oleracea (C genome) and in ...
Conflicts of Interest: The authors declare no conflict of interest. ...
doi:10.3390/ijms221910367
pmid:34638707
pmcid:PMC8509055
fatcat:yhiastlezrgkxkgmu323ijhhwa
Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing
2020
BMC Genomics
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This study is expected to elucidate the responses of miRNAs, lncRNAs, and mRNAs to glyphosate applications and the potential regulatory mechanisms in response to glyphosate stress in rice. ...
The glyphosate stress-responsive genes were used for the development of genetically modified crops, while only the EPSPS gene has been used currently in the study on glyphosate-tolerance in rice. ...
Of which, osa-MIR167f-p3 and osa-
Discussion To better understand the global gene expression and the potential regulatory mechanisms involved in the adaptive responses to glyphosate application in rice ...
doi:10.1186/s12864-020-6637-6
pmid:32183693
fatcat:yf7f3w2avbatvgqbnt22mzp4qe
Reconstruction of gene regulatory network related to photosynthesis in Arabidopsis thaliana
2014
Frontiers in Plant Science
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is not only scientifically significant but also holding great potential in agricultural application. ...
Finally, a gene regulatory network was established by combining TF-targets information generated by these two approaches. ...
OPP1014417), Ministry of Science and Technology of China (Grant No. 2011DFA31070), and the Young Talent Frontier Program of Shanghai Institutes for Biology Sciences/Chinese Academy of Sciences (Grant No ...
doi:10.3389/fpls.2014.00273
pmid:24982665
pmcid:PMC4055858
fatcat:mql2aedeb5epjocklkjnmp23ou
Fused Graphical Lasso Recovers Flowering Time Mutation Genes in Arabidopsis Thaliana
2021
Inventions
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Observing the network level changes between two phenotypes can also help develop meaningful biological hypotheses regarding the novel functions of these genes. ...
In this work, we propose the use of the joint graphical lasso for discovering genes responsible for desired phenotypic traits. ...
Conflicts of Interest: The authors declare no conflict of interest. ...
doi:10.3390/inventions6030052
fatcat:ixcy4w5ehjhc7oqvpwfwgvzv2q
Deciphering Novel Transcriptional Regulators of Soybean Hypocotyl Elongation Based on Gene Co-expression Network Analysis
2022
Frontiers in Plant Science
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To address the problem, bioinformatics approaches along with the weighted gene co-expression network analysis (WGCNA) were carried out to elucidate the regulatory networks and identify key regulators underlying ...
Taken together, our results constructed the regulatory network and identified novel transcriptional regulators of soybean hypocotyl elongation based on WGCNA, which provide new insights into the global ...
ORIGINAL RESEARCH article Deciphering Novel Transcriptional Regulators of Soybean Hypocotyl Elongation Based on Gene Co-expression Network Analysis 1 College of Life Science and Technology, Huazhong ...
doi:10.3389/fpls.2022.837130
pmid:35273629
pmcid:PMC8902393
fatcat:irxxxha255hrjolvcnq4dxqmhq
Nucleo-plastidic PAP8/pTAC6 couples chloroplast formation with photomorphogenesis
[article]
2020
biorxiv/medrxiv
pre-print
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In these semi-autonomous organelles, the construction of the photosynthetic apparatus depends on the coordination of nuclear and plastid gene expression. ...
AbstractThe initial greening of angiosperm occurs upon light-activation of photoreceptors that trigger photomorphogenesis followed with the development of chloroplasts. ...
of the light-signalling network. ...
doi:10.1101/2020.03.10.985002
fatcat:42pm4xl67rcqdnu4lwpmw7dmje
Transcriptome and Metabolomic Analyses Reveal Regulatory Networks Controlling Maize Stomatal Development in Response to Blue Light
2021
International Journal of Molecular Sciences
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Transcriptome comparisons and correlation signaling network analysis detected 55 genes, and identified 6 genes that work in the regulation of the HY5 module and MAPK cascade, that interact with PTI1, COI1 ...
metabolism of metabolites, and eight obtained genes worked in the HY5 module and MAPK cascade. ...
Conflicts of Interest: The authors declare no conflict of interest. ...
doi:10.3390/ijms22105393
pmid:34065495
pmcid:PMC8161096
fatcat:df4nqdjnl5e4dijisa4hbiadeq
The Mediator Complex Subunit PFT1 Interferes with COP1 and HY5 in the Regulation of Arabidopsis Light Signaling
2012
Plant Physiology
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Expression profile analyses revealed that PFT1(eid3) alters the transcript accumulation of light-regulated genes even in darkness. ...
of the ELONGATED HYPOCOTYL5 transcription factor, an important positive regulator of light-dependent gene expression. ...
Thus, regulatory modification of PFT1 is now a known point in the complex network controlling light-regulated gene expression. ...
doi:10.1104/pp.112.197319
pmid:22760208
pmcid:PMC3440207
fatcat:cygllt5pqbe6hpe3gxpgvoxtdy
TheArabidopsisC2H2 Zinc Finger INDETERMINATE DOMAIN1/ENHYDROUS Promotes the Transition to Germination by Regulating Light and Hormonal Signaling during Seed Maturation
2011
The Plant Cell
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Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis. Plant J.
54: 608-620. ...
GNC
expression is repressed by GA application and elevated in ga-1 and gid1abc mutants. ...
doi:10.1105/tpc.111.085134
pmid:21571950
pmcid:PMC3123948
fatcat:mdju225rfjewdj6wuacklryhnm
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