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Mapping the microbial interactome: Statistical and experimental approaches for microbiome network inference

Anders B Dohlman, Xiling Shen
2019 Experimental biology and medicine  
the effect of microbe B on microbe A.  ...  and y represents the net effect of microorganism A on microorganism B.  ... 
doi:10.1177/1535370219836771 pmid:30880449 pmcid:PMC6547001 fatcat:u44dnsfq75aind5xaldhf62ada

Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transition

Simon Koplev, Katie Lin, Anders B. Dohlman, Avi Ma'ayan, Julio Saez-Rodriguez
2018 PLoS Computational Biology  
The red percentage indicates the fraction of compared genes with coupled (r b > 0.5) bimodalities at the transcript-and protein level. (B) Bimodal coupling of phosphosites and protein expression.  ...  Overall, 14.0% of proteins measured in MCLP had highly coupled (r b > 0.5) bimodal expression of mRNA and protein.  ... 
doi:10.1371/journal.pcbi.1005911 pmid:29293502 pmcid:PMC5766255 fatcat:5b6lhlrpo5empdtsut5wkoqchu

GEN3VA: aggregation and analysis of gene expression signatures from related studies

Gregory W. Gundersen, Kathleen M. Jagodnik, Holly Woodland, Nicholas F. Fernandez, Kevin Sani, Anders B. Dohlman, Peter Man-Un Ung, Caroline D. Monteiro, Avner Schlessinger, Avi Ma'ayan
2016 BMC Bioinformatics  
The filter is set to the overall top 50 most consistent enriched drugs Fig. 10 10 Docking of ketorolac and dexamethasone to the GR pocket. a zinc2279 (R)-ketorolac; b zinc11012 (S)-ketorolac.  ... 
doi:10.1186/s12859-016-1321-1 pmid:27846806 pmcid:PMC5111283 fatcat:vlfpektbkfgtbnds2hafvwqd7a

The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress

Michael Bauer, Zuzana Nascakova, Anca-Irina Mihai, Phil F. Cheng, Mitchell P. Levesque, Simon Lampart, Robert Hurwitz, Lennart Pfannkuch, Jana Dobrovolna, Melanie Jacobs, Sina Bartfeld, Anders Dohlman (+8 others)
2020 Nature Communications  
Taken together, our results link bacterial infection and NF-κB-driven innate immune responses to R-loop-dependent replication stress and DNA damage.  ...  Here, we show that H. pylori-induced DNA damage occurs co-transcriptionally in S-phase cells that activate NF-κB signaling upon innate immune recognition of the lipopolysaccharide biosynthetic intermediate  ...  inhibition (Fig. 2a, b) .  ... 
doi:10.1038/s41467-020-18857-z pmid:33037203 fatcat:jaileeulqzh2rlzyrnrl2vyigy

Page 926 of The Annals of Otology, Rhinology & Laryngology Vol. 60, Issue 4 [page]

1951 The Annals of Otology, Rhinology & Laryngology  
Dohlman, G. F.: Some physical Investigations on Galvanic Irritation of the Labyrinth, Acta Otolaryng. Suppl. 6:53, 1926. 12. Linthicum, F. H.: Nystagmography.  ...  Schott: Uber die Registrierung des Nystagmus und anderer Augenbe- wegungen vermittels des Saitengalvanometer, Deut. Arch. f. Klin. Med. 140:79, i922. 15. Meyers, I. L.: Electronystagmography, Arch.  ... 

Mycobacterial infection aggravates Helicobacter pylori-induced gastric preneoplastic pathology by redirection of de novo induced Treg cells

Mariela Artola-Borán, Angela Fallegger, Martina Priola, Rima Jeske, Tim Waterboer, Anders B Dohlman, Xiling Shen, Sebastian Wild, Jiazhuo He, Mitchell P Levesque, Shida Yousefi, Hans-Uwe Simon (+2 others)
2022
Presence of H. pylori and Mtb DNA was determined using data from The Cancer Microbiome Atlas (TCMA) (Dohlman et al., 2021) .  ...  H. pylori infection of the groups shown in (B)-(J).  ... 
doi:10.48350/167886 fatcat:qrsuqadpujhk3advmzd5s6zjt4

Mycobacterial infection aggravates Helicobacter pylori-induced gastric preneoplastic pathology by redirection of de novo induced Treg cells

Mariela Artola-Borán, Angela Fallegger, Martina Priola, Rima Jeske, Tim Waterboer, Anders B Dohlman, Xiling Shen, Sebastian Wild, Jiazhuo He, Mitchell P Levesque, Shida Yousefi, Hans-Uwe Simon (+2 others)
2022
Presence of H. pylori and Mtb DNA was determined using data from The Cancer Microbiome Atlas (TCMA) (Dohlman et al., 2021) .  ...  H. pylori infection of the groups shown in (B)-(J).  ... 
doi:10.5167/uzh-218985 fatcat:32u6tdpd7zf77ktcaf7mz4l274

The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress

Michael Bauer, Zuzana Nascakova, Anca-Irina Mihai, Phil F Cheng, Mitchell P Levesque, Simon Lampart, Robert Hurwitz, Lennart Pfannkuch, Jana Dobrovolna, Melanie Jacobs, Sina Bartfeld, Anders Dohlman (+8 others)
2020
Taken together, our results link bacterial infection and NF-B-driven innate immune responses to R-loop-dependent replication stress and DNA damage.  ...  Taken together, our results link bacterial infection and NF-κB-driven innate immune responses to R-loop-dependent replication stress and DNA damage.  ...  inhibition (Fig. 2a, b) .  ... 
doi:10.5167/uzh-190954 fatcat:kkobe6sa5zesdl5i6qol47zwwe

The "Lente" Insulins in Juvenile Diabetes

GUNNAR ENGLESON, ORLA LEHMANN
2008 Acta Paediatrica  
Wallgren, M.D., Stockholm, B. Vahl- quist, M.D., Uppsala, Sweden. REDACTORES: in Dania, Bent Andersen, Oluf Ander- sen, P. Plum; in Fennia, P. Heinié, V. Rantasalo, C.-E. Raihi, T.  ...  Dohlman, Lund, P, Frenckner, Stockholm, H. Haxthausen, Kobenhavn, 8. Hellerstrém, Stockholm, E. . Jarlov, Kobenhavn, W. Kerppola, Helsingfors, M. Kobro, Oslo, H.  ... 
doi:10.1111/j.1651-2227.1957.tb16159.x fatcat:2tktmnk2kjdwdgzucdufz44gc4

Page 911 of British Journal of Clinical Pharmacology Vol. 30, Issue 6 [page]

1990 British Journal of Clinical Pharmacology  
ANDERER, P. see SALETU, B. ANDREASEN, F. see SONNE, J. ANGELI, P. see MERKEL, C. ANGELO, H.R. see HERRSTEDT, J. ANTHONY, L.B. see ZHOU, H.H. ANTTILA, M. see KARHUVA, S. AQUILONIUS, S.  ...  BENOVIC, J.L., ONORATO, J., LOHSE, M.J., DOHLMAN, H.G., STANISZEWSKI, C., CARON, M.G. & LEFKOWITZ, R.J.  ... 

Page 317 of Acta Paediatrica Vol. 46, Issue 3 [page]

1957 Acta Paediatrica  
Wallgren, M.D., Stockholm, B. Vahl- quist, M.D., Uppsala, Sweden. REDACTORES: in Dania, Bent Andersen, Oluf Ander- sen, P. Plum; in Fennia, P. Heinié, V. Rantasalo, C.-E. Raihi, T.  ...  Dohlman, C.-A. Hamber- ger, Lennart Holmgren, C. O. Nylén. EDITORIAL OFFICE: Askrikegatan 3, Stockholm O. BUSINESS OFFICE: P.O. Box 400, Uppsala, Sweden. Subscription: Sw. kronor 60.—.  ... 

Page 653 of Acta Paediatrica Vol. 46, Issue 6 [page]

1957 Acta Paediatrica  
Wallgren, M.D., Stockholm, B. Vahl- quist, M.D., Uppsala, Sweden. REDACTORES: in Dania, Bent Andersen, Oluf Ander- sen, P. Plum; in Fennia, P. Heinié, V. Rantasalo, C.-E. Riihi, T.  ...  Dohlman, C.-A. Hamber- ger, Lennart Holmgren, C. O. Nylén. EDITORIAL OFFICE: Askrikegatan 3, Stockholm O. BUSINESS OFFICE: P.O. Box 400, Uppsala, Sweden. Subscription: Sw. kronor 60.—.  ... 

Page 535 of Acta Paediatrica Vol. 46, Issue 5 [page]

1957 Acta Paediatrica  
Wallgren, M.D., Stockholm, B. Vahl- quist, M.D., Uppsala, Sweden. REDACTORES: in Dania, Bent Andersen, Oluf Ander- sen, P. Plum; in Fennia, P. Meinié, V. Rantasalo, C.-E. Riihii, T.  ...  Dohlman, C.-A. Hamber- ger, Lennart Holmgren, C. O. Nylén. EDITORIAL OFFICE: Askrikegatan 3, Stockholm O. BUSINESS OFFICE: P.O. Box 400, Uppsala, Sweden. Subscription: Sw. kronor 60.—.  ... 

Page 25 of JAMA Otolaryngology - Head & Neck Surgery Vol. 70, Issue 3 [page]

1959 JAMA Otolaryngology - Head & Neck Surgery  
.; Ander- man, B., and Ezekiel, M. M.: Mobilization of Middle-Ear Structures Through the Eu- stachian Tube, A.M.A. Arch. Otolaryng 62 :187-197, 1955. Danic, S.  ...  Dohlman, G.: The Mechanism of the Cupula, Pract. oto-rhino-laryng. 17:145-148, 1955. Virus Meningitis and Hearing, Arch. Kehlkopfh. 167 :328-331, Eigler, G.: Ohren- 1955. Nasen- u.  ... 

Page 215 of Acta Paediatrica Vol. 46, Issue 2 [page]

1957 Acta Paediatrica  
Wallgren, M.D., Stockholm, B. Vahl- quist, M.D., Uppsala, Sweden. REDACTORES: in Dania, Bent Andersen, Oluf Ander- sen, P. Plum; in Fennia, P. Heinié, V. Rantasalo, C.-E. Riiihi, T.  ...  Dohlman, C.-A. Hamber- ger, Lennart Holmgren, C. O. Nylén. EDITORIAL OFFICE: Askrikegatan 3, Stockholm O. BUSINESS OFFICE: P.O. Box 400, Uppsala, Sweden. Subscription: Sw. kronor 45.—.  ... 
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