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Anatomy of data integration

Olga Brazhnik, John F. Jones
2007 Journal of Biomedical Informatics  
The ocean of data created with the advances of science and technologies calls for integration of data coming from heterogeneous sources that are diverse in their purposes, business rules, underlying models  ...  In this paper we initiate a framework for assessing the informational value of data that includes data dimensions; aligning data quality with business practices; identifying authoritative sources and integration  ...  The authors hope that understanding of the anatomy of data integration will assist project managers, informaticians, data architects, data warehouse and health information system designers in producing  ... 
doi:10.1016/j.jbi.2006.09.001 pmid:17071142 pmcid:PMC2094006 fatcat:aj4oxnfehvhjpeedrcb6h3jc7e

Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities [article]

Pasan C Fernando, Paula M Mabee, Erliang Zeng
2020 bioRxiv   pre-print
These anatomy-based gene networks are semantic networks, as they are constructed based on the Uberon anatomy ontology annotations that are obtained from the experimental data in the literature.  ...  We integrated these anatomy-based gene networks with mouse and zebrafish PPI networks retrieved from the STRING database, and we compared the performance of their network-based candidate gene predictions  ...  of integrating experimental anatomical data via anatomy ontology annotations and 315 not due to random error/noise.  ... 
doi:10.1101/2020.03.07.981795 fatcat:lvvzqnlzwrbo3dgsz4m6kpqmku

Variation in the representation of human anatomy within digital resources: Implications for data integration

Melissa D Clarkson, Mark E Whipple
2018 AMIA Annual Symposium Proceedings  
But differences and ambiguities in naming anatomical structures and partitioning the body can complicate efforts to interlink anatomical resources and integrate clinical data.  ...  The variations in these resources allow us to categorize differences in representations of anatomy and to highlight the importance of this topic in the context of clinical informatics.  ...  topic for efforts to integrate clinical data.  ... 
pmid:30815072 pmcid:PMC6371295 fatcat:p4jmgoflmfbk5bjmes7h5y5np4

N-CANDA data integration: anatomy of an asynchronous infrastructure for multi-site, multi-instrument longitudinal data capture

T. Rohlfing, K. Cummins, T. Henthorn, W. Chu, B. N. Nichols
2014 JAMIA Journal of the American Medical Informatics Association  
, asynchronous transfer and persistent storage of collected data via a revision control system; (b) two-stage import into a longitudinal database; and (c) use of a script-controlled web browser for data  ...  The asynchronous operation of data transmission and import is of particular benefit, as it has allowed the consortium sites to begin data collection before the receiving database infrastructure had been  ...  Ethics approval Institutional Review Boards of SRI International, University of California-San Diego, Duke University, University of Pittsburgh, Oregon Health and Sciences University, and Stanford University  ... 
doi:10.1136/amiajnl-2013-002367 pmid:24296908 pmcid:PMC4078281 fatcat:l32rsbz66zc4bhbaas5trmj53i

Integration of anatomy ontology data with protein–protein interaction networks improves the candidate gene prediction accuracy for anatomical entities

Pasan C. Fernando, Paula M. Mabee, Erliang Zeng
2020 BMC Bioinformatics  
These anatomy-based gene networks were semantic networks, as they were constructed based on the anatomy ontology annotations that were obtained from the experimental data in the literature.  ...  We integrated these anatomy-based gene networks with mouse and zebrafish PPI networks retrieved from the STRING database and compared the performance of their network-based candidate gene predictions.  ...  The semantic network construction scripts were implemented on the High-Performance Computing (HPC) clusters at the University of South Dakota and the University of Iowa (Argon Cluster).  ... 
doi:10.1186/s12859-020-03773-2 pmid:33028186 fatcat:fpjge7fzwbda3kupjf3norgvea

Mapping of human and macaque sensorimotor areas by integrating architectonic, transmitter receptor, MRI and PET data

K Zilles, G Schlaug, M Matelli, G Luppino, A Schleicher, M Qü, A Dabringhaus, R Seitz, P E Roland
1995 Journal of Anatomy  
Morphological data on these areas were integrated with functional data from positron emission tomography (PET) on the basis of a recently developed computerised brain atlas.  ...  and to the anterior part of the agranular cingulate cortex of architectonic studies.  ...  PET data have been added by integrating the data from the different approaches and modalities on the basis of a computerised brain atlas (Roland & Zilles, 1994) .  ... 
pmid:8586553 pmcid:PMC1167457 fatcat:n6gfw7h4zbhtpcxuxpo4puxxeu

Integrating digital technologies for dental prostheses: from impression to single crowns. A pilot study

Gianluca Martino Tartaglia, Functional Anatomy Research Center (FARC) Laboratory of Functional Anatomy of the Stomatognathic Apparatus, Department of Biomedical Sciences for Health, Faculty of Medicine, University of Milan, Milan, Italy, Petyo Penchev, Chiarella Sforza, SST Dental Clinic, Segrate (MI), Italy 3 3dObject and data Software Taverne, Switzerland, Object and data Software Taverne, Switzerland, Functional Anatomy Research Center (FARC) Laboratory of Functional Anatomy of the Stomatognathic Apparatus, Department of Biomedical Sciences for Health, Faculty of Medicine, University of Milan, Milan, Italy
2015 Stomatology Edu Journal  
Purpose: The aim of this case series was to assess the accuracy of digital workflow for single posterior tooth rehabilitation.  ...  Integrating digital technologies for dental prostheses: from impression to single crowns. A pilot study. Stoma Edu J. 2015;2(2):162-167.  ...  The completed scan data were digitally delivered to a manufacturing facility (3d Objects and Data Software, Taverne, Switzerland).  ... 
doi:10.25241/stomaeduj.2015.2(2).art.9 fatcat:apmfxum7lrditdby5zizp2nyqa

Incidence of Mortality rates due to Tuberculosis in Association of South East Asian Nations and its relation to Current Health Expenditure Per Capita: A secondary Data Analysis

Laila Ayman Ahmed, Medical student, Perdana University-Royal College of Surgeon's in Ireland School of Medicine (PU-RCSI), Perdana University, Kuala Lumpur, Malaysia., Jeevan K Shetty, Vishnumukkala Thirupathirao, Venkatesh R. Naik, Department of Biochemistry, Perdana University-Royal College of Surgeon's in Ireland School of Medicine (PU-RCSI), Perdana University, Kuala Lumpur, Malaysia., Department of Anatomy, Perdana University-Royal College of Surgeon's in Ireland School of Medicine (PU-RCSI), Perdana University, Kuala Lumpur, Malaysia., Department of Pathology, Perdana University-Royal College of Surgeon's in Ireland School of Medicine (PU-RCSI), Perdana University, Kuala Lumpur, Malaysia.
2021 International Journal of Integrative Medical Sciences  
The data was obtained from global health observatory data repository databases and World Bank Organization respectively. They were analysed using SPSS trial version 23.  ...  Key words: Tuberculosis , ASEAN, Secondary data analysis, Mortality, Current health expenditure per capita.  ...  Since the implementation of DOTS in Thailand in 2001, The Global Health Observatory Data Repository GHODR database was used to get the data of the mortality rates per 100000 population due to TB among  ... 
doi:10.16965/ijims.2021.110 fatcat:4faaak4iubcojc26qv3eu3x6rm

Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data

Terry F. Hayamizu, Richard A. Baldock, Martin Ringwald
2015 Mammalian Genome  
Mouse anatomy ontologies provide standard nomenclature for describing normal and mutant mouse anatomy, and are essential for the description and integration of data directly related to anatomy such as  ...  We report on recent ontology enhancements, describe the current status, and discuss future plans for mouse anatomy ontology development and application in integrating data resources.  ...  to the new version of the mouse developmental anatomy ontology, and for help with the figures presented in this paper.  ... 
doi:10.1007/s00335-015-9584-9 pmid:26208972 pmcid:PMC4602063 fatcat:bydou3vkfzd37itvnzt7ehuqg4

The Integrative use of Anatomy Ontology and Protein-protein Interaction Networks to Study Evolutionary Phenotypic Transitions

Pasan Fernando, Erliang Zeng Paula Mabee
2018 International Conference on Biomedical Ontology  
Therefore, an integrative framework was developed using PPI networks and anatomy ontology, which significantly improved the accuracy of network-based candidate gene predictions in zebrafish and mouse.  ...  The recent advances in next-generation technologies have accumulated large volumes of genomics and proteomics data, which can be used to analyze the genetic basis for evolutionary phenotypic transitions  ...  Comparison of ROC curves for PPI (red), integrated (green), and anatomy-based gene (blue) networks for the four semantic similarity methods.  ... 
dblp:conf/icbo/FernandoM18 fatcat:lcjf2rqs3ragpkgllm56yeneuu

Examining Course Credits, Placement, and Integration of Pathophysiology and Anatomy and Physiology within PharmD Curriculum

Meagan L. Dias, Kaitlin J. Armstrong, Megan M. Pantos, Joshua J. Spooner, Daniel R. Kennedy
2020 American Journal of Pharmaceutical Education  
The majority (65.3%) of pathophysiology courses were incorporated into the curriculum by integration, while some (14.5%) had both stand-alone and integrated pathophysiology courses.  ...  Eight programs listed uninterpretable or incomplete website data and were excluded, producing a final sample size of 138 programs.  ...  Most of these programs incorporated anatomy and physiology into the professional program through integration of subject matter in these areas with subject matter in related disciplines, or had an anatomy  ... 
doi:10.5688/ajpe8025 pmid:34283751 pmcid:PMC7712727 fatcat:j2zhlv7cnvecpgx2ahqtfh7ivq

'Student Opinions on the Importance and Detail of the Accumulation of Anatomy Knowledge Integrating General Surgery'

Erengül BODUÇ, Tülay ALLAHVERDİ
2020 MIDDLE BLACK SEA JOURNAL OF HEALTH SCIENCE  
Conclusion: This study was conducted for the importance and awareness of the integration of clinical and anatomy branches with each other.  ...  In general, the students want the integration of anatomy into clinical branches in a more up-to-date manner, apart from the traditional anatomy course.  ...  Conclusion This study was conducted for the importance and awareness of the integration of clinical and anatomy branches with each other.  ... 
doi:10.19127/mbsjohs.803373 fatcat:wjavr3zl4jcnldbfcwmwfjlmia

Predictors of confidence in anatomy knowledge for work as a junior doctor: a national survey of Australian medical students

John E. Farey, David T. Bui, David Townsend, Premala Sureshkumar, Sandra Carr, Chris Roberts
2018 BMC Medical Education  
Items associated with increased self-reported confidence in anatomy knowledge included adequate assessment of anatomy ( Odds Ratio 2.17 [95% CI 1.69-2.81]), integration of anatomy with other basic sciences  ...  Major changes to the teaching of anatomy associated with the integration of basic and clinical sciences in modern medical curricula have coincided with students reporting concern over achievement of learning  ...  Availability of data and materials Data may be available on request from the authors. For access to raw data, please contact the corresponding author.  ... 
doi:10.1186/s12909-018-1280-5 pmid:30064431 pmcid:PMC6069702 fatcat:kdewtsbagbdmdkny6iu4dmvf5a

The effect of teaching integrated course of physical examination and radiological anatomy in practical limb anatomy on medical students' learning outcomes

Hossain Sadeqi, Ali Valiani, Maryam Avizhgan, Seyed Abbas Ebrahimi, Amirreza Manteghinejad, Pantea Miralai, Athar Omid
2021 BMC Medical Education  
The purpose of this study was to evaluate the effects of teaching integrated course of physical examination and radiological anatomy in practical limb anatomy on medical students' learning outcomes.  ...  Conclusions The findings of this study showed that teaching practical anatomy with a clinical integrated approach can improve the practical knowledge of anatomy, knowledge retention, and clinical applications  ...  Acknowledgements The authors wish to thank Isfahan Medical Education Research Center and National Agency for Strategic Research in Medical Education for financial support of this study.  ... 
doi:10.1186/s12909-021-02898-z pmid:34461880 fatcat:52oolz33bzbdzk4lagn4jxwitq

Integrated virtual and cadaveric dissection laboratories enhance first year medical students' anatomy experience: a pilot study

Kathryn E. Darras, Rebecca Spouge, Rose Hatala, Savvas Nicolaou, Jeff Hu, Anne Worthington, Claudia Krebs, Bruce B. Forster
2019 BMC Medical Education  
Radiology integration into medical anatomy courses is well established, but there is a paucity of literature on integrating virtual dissection into cadaveric dissection laboratories.  ...  The purpose of this pilot study was to investigate the feasibility of integrating virtual dissection into a first-year medical cadaver-based anatomy course and to assess students' overall attitude towards  ...  Several studies demonstrate how vertical integration is facilitated in anatomy education by the integration of radiology [10, 23, 24] .  ... 
doi:10.1186/s12909-019-1806-5 pmid:31590672 pmcid:PMC6781397 fatcat:bwaffl2ur5gn3c6r73rpqhwk5a
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