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MaTSE: the gene expression time-series explorer

Paul Craig, Alan Cannon, Robert Kukla, Jessie Kennedy
2013 BMC Bioinformatics  
There are however significant challenges to properly exploiting this data due to its massive scale and complexity.  ...  High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatment, and prevention of diseases.  ...  Figure 13 A pattern of temporal activity selected in an application that supports both clustering and visual queries.  ... 
doi:10.1186/1471-2105-14-s19-s1 pmid:24564291 pmcid:PMC3981573 fatcat:pmkifmo5yvat3k3jcyrcj2h3be

Partitioning and Segment Organization Strategies for Real-Time Selective Search on Document Streams

Yulu Wang, Jimmy Lin
2017 Proceedings of the Tenth ACM International Conference on Web Search and Data Mining - WSDM '17  
The basic idea behind selective search is to partition a collection into topical clusters, and for each query, consider only a subset of the clusters that are likely to contain relevant documents.  ...  In our approach, documents are partitioned into temporal segments and selective search is performed within each segment: these segments can either be clustered using batch or online algorithms, and at  ...  We thank the reviewers and particularly the meta-reviewer for their helpful comments and guidance.  ... 
doi:10.1145/3018661.3018727 dblp:conf/wsdm/WangL17 fatcat:5vi2rnswxrdnhk7733stxs2ofi

Function Field Analysis for the Visualization of Flow Similarity in Time-Varying Vector Fields [chapter]

Harald Obermaier, Kenneth I. Joy
2012 Lecture Notes in Computer Science  
Our results demonstrate how analysis of time-varying flow fields can benefit from a conversion into function field representations and show the robustness of our presented clustering techniques.  ...  allows to answer data analysis questions that remain unanswered with classic time-varying vector field analysis techniques.  ...  Acknowledgements The authors wish to thank the members of the Institute for Data Analysis and Visualization (IDAV) for valuable discussions and support.  ... 
doi:10.1007/978-3-642-33191-6_25 fatcat:7xw7mwxguve3lpy4fgnxz6agvy

SQRQuerier: A Visual Querying Framework for Cross-national Survey Data Recycling [article]

Yamei Tu, Olga Li, Junpeng Wang, Han-Wei Shen, Przemek Powalko, Irina Tomescu-Dubrow, Kazimierz M. Slomczynski, Spyros Blanas, J. Craig Jenkins
2022 arXiv   pre-print
As a result, it is still challenging for social scientists to efficiently identify related data for their studies and evaluate their theoretical models based on the sliced data.  ...  However, such portals offer little guidance to explore the data in-depth or query data with user-customized needs.  ...  From the solid evaluation and thorough studies, we have identified several applications for QBQ and exemplified how QBC and QBR help scientists to understand, explore, and utilize harmonized survey data  ... 
arXiv:2201.11125v1 fatcat:zt62oik64jethljs23q7txfp34

Multiple perspective interactive search: a paradigm for exploratory search and information retrieval on the web

Rahul Singh, Ya-Wen Hsu, Naureen Moon
2011 Multimedia tools and applications  
Thus, there is a need to develop novel paradigms for web-based user-data interactions that emphasize user context and interactivity with the goal of facilitating exploration, interpretation, retrieval,  ...  This information is used to organize and present the results through an interactive and reflective user interface which supports both exploration and search.  ...  Acknowledgments The authors also thank Dil Chiture, Liu Yang, and Wen-Cheng Sun for participation in early parts of this research, results from which were published in [39] .  ... 
doi:10.1007/s11042-011-0910-2 fatcat:hb4fleosijg5bio7ccdtb2zora

A Multiple-Perspective, Interactive Approach for Web Information Extraction and Exploration

Naureen Moon, Ya-Wen Hsu, R. Singh
2006 22nd International Conference on Data Engineering Workshops (ICDEW'06)  
The approach is developed around the twin themes of supporting data context and facilitating effective interactions between users and data.  ...  (such as spatio-temporal, causal, evolutionary) in the data.  ...  Similarly, only the spatio-temporal data for these web pages is shown on the map and timeline.  ... 
doi:10.1109/icdew.2006.11 dblp:conf/icde/MoonHS06 fatcat:7e6cx3p2hbcunjso4wm4m5m5cy

A Knowledge Integration Framework for Information Visualization [chapter]

Jinwook Seo, Ben Shneiderman
2005 Lecture Notes in Computer Science  
When dealing with multidimensional data and clustering results, the most familiar displays and comprehensible are 1-and 2-dimensional projections (histograms, and scatterplots).  ...  Other easily understood displays of domain knowledge are tabular and hierarchical information for the same or related data sets.  ...  Acknowledgements: We appreciate the support from and partnership with Eric Hoffman and his lab at the Children's National Medical Center, through NIH grant N01-NS-1-2339.  ... 
doi:10.1007/978-3-540-31842-2_21 fatcat:57qn7n4pyna3xhxqvpu6zugz2u

Energy-saving models for wireless sensor networks

Daniele Apiletti, Elena Baralis, Tania Cerquitelli
2010 Knowledge and Information Systems  
SeReNe exploits clustering techniques to study temporal correlation among sensor data streams and spatial correlation among sensor nodes.  ...  SeReNe exploits different clustering algorithms to discover spatial and temporal correlations which allow the identification of sets of correlated sensors and sensor data streams.  ...  Acknowledgements The authors would like to thank the research team of the WiFi4Energy project for technical contribution and Vincenzo D'Elia, Dante Bonino and Attilio Marchetti for developing parts of  ... 
doi:10.1007/s10115-010-0328-6 fatcat:raqldhtqgvfqbl5vuvjlvrbmha

Disambiguating Implicit Temporal Queries by Clustering Top Relevant Dates in Web Snippets

Ricardo Campos, Alipio Mario Jorge, Gael Dias, Celia Nunes
2012 2012 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology  
We used several measures for evaluating the performance of the system and compared our approach with Carrot Web-snippet clustering engine. Both experiments were complemented with a user survey.  ...  For example, when querying "Football World Cup Germany", it would be interesting to have two separate clusters corresponding to each of the two temporal instances.  ...  This work is funded by the ERDF through the Programme COMPETE and by the Portuguese Government through FCT -Foundation for Science and Technology and grant (Reference: SFRH/BD/63646/2009).  ... 
doi:10.1109/wi-iat.2012.158 dblp:conf/webi/CamposJDN12 fatcat:eb7eic75org3ventnoanwcloee

A Query Taxonomy Describes Performance of Patient-Level Retrieval from Electronic Health Record Data [article]

Steve R Chamberlin, Steven D. Bedrick, Aaron M. Cohen, Yanshan Wang, Andrew Wen, Sijia Liu, Hongfang Liu, William Hersh
2019 medRxiv   pre-print
We used an IR test collection containing 56 test patient cohort definitions, 100,000 patient records originating from an academic medical institution EHR data warehouse, and automated word-base query tasks  ...  from these characteristics, and interactions between these measures and the automated query parameter settings.  ...  Materials and Methods Test Data To test the taxonomy developed for this project, we used the query performance data generated in a previous medical IR study [5] .  ... 
doi:10.1101/19012294 fatcat:cst5jcubjne73jkxxutbhram5i

Database research at the University of Oklahoma

Le Gruenwald, Leonard Brown, Ravi Dirckze, Sylvain Guinepain, Carlos Sanchez, Brian Summers, Sirirut Vanichayobon
1999 SIGMOD record  
Specifically, we are striving to develop an indexing and storage technique for object-oriented temporal data that would be efficient for temporal queries while remaining optimal for non-temporal ones.  ...  Another issue in dynamic temporal databases is to store the data so as to minimize the disk I/O for both temporal and non-temporal queries.  ... 
doi:10.1145/333607.333616 fatcat:gp57u4ttjbbj3gubtskv7vrqqe

Similarity-Based Retrieval of Temporal Specifications and its Application to the Retrieval of Multimedia Documents

K. Selçuk Candan, Prakash Yamuna
2005 Multimedia tools and applications  
For this purpose, we describe different temporal data models and a set of similarity metrics applicable for different retrieval tasks.  ...  We develop techniques that allow users to query and retrieve multimedia documents, based on their temporal content.  ...  For each cluster, we can use the data point closest to the center of the minimum bounding region as the cluster representative, and we can use these cluster representatives for the query-to-space mapping  ... 
doi:10.1007/s11042-005-2717-5 fatcat:2xm55dxxhrgmjp4sudnj4c2w2y

Temporal Dynamics of User Interests in Web Search Queries

Aysegul Cayci, Selcuk Sumengen, Cagatay Turkay, Selim Balcisoy, Yucel Saygin
2009 2009 International Conference on Advanced Information Networking and Applications Workshops  
The aim in this paper 1 is to cluster users based on their interests, and analyze the temporal dynamics of these clusters.  ...  Web search query logs contain valuable information which can be utilized for personalization and improvement of search engine performance.  ...  the following equations: A manually selected subset of the resulting clusters is shown in , and the number of users projected onto these clusters.  ... 
doi:10.1109/waina.2009.71 dblp:conf/aina/CayciSTBS09 fatcat:jgl2okl32vaerpfl4c5y2iltma

Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data

Oliver Rübel, Sean Ahern, E. Wes Bethel, Mark D. Biggin, Hank Childs, Estelle Cormier-Michel, Angela DePace, Michael B. Eisen, Charless C. Fowlkes, Cameron G.R. Geddes, Hans Hagen, Bernd Hamann (+11 others)
2010 Procedia Computer Science  
With the ability to measure and simulate more processes at increasingly finer spatial and temporal scales, the growing number of data dimensions and data objects presents tremendous challenges for effective  ...  data analysis and data exploration methods and tools.  ...  Acknowledgment The work concerning the analysis of 3D gene expression data was supported by the National Institutes of Health We thank the members of IDAV at UC Davis, the BDTNP and LOASIS at LBNL, the  ... 
doi:10.1016/j.procs.2010.04.197 pmid:23762211 pmcid:PMC3677775 fatcat:kohm7rkbtbbinecvfgtwyw6s5u

Mobility, Data Mining and Privacy: The GeoPKDD Paradigm [chapter]

Fosca Giannotti, Roberto Trasarti
2010 Proceedings of the 2009 SIAM Conference on "Mathematics for Industry"  
Pursuing this ambitious objective, the GeoPKDD project has started a new exciting multidisciplinary research area, at the crossroads of mobility, data mining, and privacy.  ...  This paper gives a short overview of the envisaged research challenges and the project achievements.  ...  The spatio-temporal query primitives support selection and pre-processing of trajectory data w.r.t. geographic background knowledge, as well as anonymization.  ... 
doi:10.1137/1.9781611973303.2 fatcat:4ig3w67fbrbqvibvq3iwlw7qly
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