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An Open Source Tool for Game Theoretic Health Data De-Identification

Fabian Prasser, James Gaupp, Zhiyu Wan, Weiyi Xia, Yevgeniy Vorobeychik, Murat Kantarcioglu, Klaus Kuhn, Brad Malin
2018 AMIA Annual Symposium Proceedings  
Biomedical data continues to grow in quantity and quality, creating new opportunities for research and data-driven applications.  ...  To maintain privacy, healthcare organizations often de-identify data, but they assume worst-case adversaries, inducing high levels of data corruption.  ...  Acknowledgements This work was sponsored, in part, from grants R01HG006844, R01LM009989, RM1HG009034, U01HG006385, and U01HG006378 from the National Institutes of Health.  ... 
pmid:29854212 pmcid:PMC5977602 fatcat:32xj4gzv4fejjbpppezyri5olq

Neighbourhood identification and mental health: How social identification moderates the relationship between socioeconomic disadvantage and health

Polly Fong, Tegan Cruwys, Catherine Haslam, S. Alexander Haslam
2019 Journal of Environmental Psychology  
The novel and far-reaching implications of neighbourhood identification for community mental health are discussed.  ...  Study 2 used a novel experimental design (N = 280) to investigate the causal effects of neighbourhood SES and neighbourhood identification on mental health.  ...  Study 1 tested the hypothesized model using a large sample of population data; Study 2 explored the directionality of these relationships using an analogue measure of mental health in an online experiment  ... 
doi:10.1016/j.jenvp.2018.12.006 fatcat:5j5qas73cjhkrlay63gtvcanee

Transcriptome dataset for RNA-seq analysis of axolotl embryonic oropharyngeal endoderm explants

Lauren Marazzi, Priya Kohli, Deborah Eastman
2020 Data in Brief  
RNA-seq data from 17 total samples representing these stages were pooled to generate a de novo assembly of the transcriptome using a Trinity pipeline.  ...  This RNA-seq data and transcriptome assembly provide information on genes expressed in the oropharyngeal endoderm and will be valuable in the identification of taste bud development genes.  ...  This work was funded by a Research Matters award from Connecticut College and an NSF RCNUBE Award to Juniata College, 1248096.  ... 
doi:10.1016/j.dib.2020.106126 pmid:32802925 pmcid:PMC7419325 fatcat:goahx5kedjb2te4dlx5hi4czsu

Efficient and effective pruning strategies for health data de-identification

Fabian Prasser, Florian Kohlmayer, Klaus A. Kuhn
2016 BMC Medical Informatics and Decision Making  
Data de-identification is an important safeguard, where datasets are transformed to meet two conflicting objectives: minimizing re-identification risks while maximizing data quality.  ...  The method described in this article has been implemented into ARX, an open source de-identification software for biomedical data.  ...  Acknowledgements This work was supported by the Technical University of Munich (TUM) within the funding programme Open Access Publishing.  ... 
doi:10.1186/s12911-016-0287-2 pmid:27130179 pmcid:PMC4851781 fatcat:pakeqp7mlbeipjh7evwedqjyzu

Privacy-enhancing ETL-processes for biomedical data

Fabian Prasser, Helmut Spengler, Raffael Bild, Johanna Eicher, Klaus A. Kuhn
2019 International Journal of Medical Informatics  
We present results of an extensive experimental evaluation and discuss successful applications.  ...  Objective: Privacy-protection needs careful consideration when data is pooled or re-used for secondary purposes, and data anonymization is an important protection mechanism.  ...  Acknowledgements The work was, in parts, funded by the German Federal Ministry of Education and Research (BMBF) within the "Medical Informatics Funding Scheme" under reference number 01ZZ1804A (DIFUTURE  ... 
doi:10.1016/j.ijmedinf.2019.03.006 fatcat:yhwxovtsp5b4tjmir56qsc3go4

Survey on RNN and CRF models for de-identification of medical free text

Joffrey L. Leevy, Taghi M. Khoshgoftaar, Flavio Villanustre
2020 Journal of Big Data  
Opinions, findings, conclusions, or recommendations in this paper are the authors' and do not reflect the views of the NSF.  ...  Acknowledgements We would like to thank the reviewers in the Data Mining and Machine Learning Laboratory at Florida Atlantic University.  ...  Finally yet importantly, there is a lack of de-identification studies for medical free text pertaining to big data, data streaming, data quality, and concept drift, just to name a few topics, and future  ... 
doi:10.1186/s40537-020-00351-4 fatcat:rwblq2emhbfllkcuyzfjtcosqu

Page 817 of American Society of Civil Engineers. Collected Journals Vol. 124, Issue 7 [page]

1998 American Society of Civil Engineers. Collected Journals  
vestigate the requisite quantity, quality, and attributes of experimental data that should be considered for ana- lytical modeling and for choosing a model calibration strategy.  ...  The models were calibrated by taking advantage of an extensive database of experimental information accumulated from the bridge.  ... 

NormalizeMets: assessing, selecting and implementing statistical methods for normalizing metabolomics data

Alysha M. De Livera, Gavriel Olshansky, Julie A. Simpson, Darren J. Creek
2018 Metabolomics  
Normalization, that is the removal of unwanted variation, is an essential step in the statistical analysis of metabolomics data.  ...  However, metabolomics normalization is often considered an imprecise science due to the diverse sources of variation and the availability of a number of alternative strategies that may be implemented.  ...  Acknowledgements Professor Terry Speed, Walter and Eliza Hall Institute of Medical Research  ... 
doi:10.1007/s11306-018-1347-7 pmid:30830328 fatcat:karvetitcjdxxebzf22q4sszou

Secondary Use of Patient Data: Review of the Literature Published in 2016

D. R. Schlegel, G. Ficheur
2017 IMIA Yearbook of Medical Informatics  
These papers discuss data quality concerns, issues in preserving privacy of patients in shared datasets, and methods of decision support when consuming large amounts of raw electronic health record (EHR  ...  an emerging area of research.  ...  Acknowledgements We would like to acknowledge the support of Brigitte Séroussi and John H. Holmes, along with the reviewers who assisted with the selection process.  ... 
doi:10.1055/s-0037-1606479 fatcat:3smlnetedvba5afcewfsy27hqq

Secondary Use of Patient Data: Review of the Literature Published in 2016

D. R. Schlegel, G. Ficheur
2017 IMIA Yearbook of Medical Informatics  
These papers discuss data quality concerns, issues in preserving privacy of patients in shared datasets, and methods of decision support when consuming large amounts of raw electronic health record (EHR  ...  an emerging area of research.  ...  Acknowledgements We would like to acknowledge the support of Brigitte Séroussi and John H. Holmes, along with the reviewers who assisted with the selection process.  ... 
doi:10.15265/iy-2017-032 pmid:29063536 pmcid:PMC6250993 fatcat:cfpmb4xn65ha3jg7mlwyzbdbfm

Validation of an instrument to assess health care quality (FACIT-TS-PS) in cancer patients
Validación de FACIT-TS-PS en una muestra de pacientes mexicanos con cáncer

Jazmín E. Hernández-Marín, Oscar Galindo-Vázquez, Rosario Costas-Muñiz, Paula Cabrera-Galeana, M. del Rosario Caballero-Tinoco, José L. Aguilar-Ponce, Abel Lerma
2020 Gaceta Médica de México  
Cancer patient satisfaction with the healthcare team is of great relevance for assessing the quality of the care provided by the health system.  ...  The confirmatory factor analysis indicated that the proposed theoretical model adjusts to the data with an error close to zero and, in addition, it is balanced and carefully measures overall patient satisfaction  ...  is considered to be relevant in at least four areas: comparison of health systems or programs, health services quality assessment, identification of aspects of services that need modifications and assistance  ... 
doi:10.24875/gmm.m20000427 pmid:33372920 pmcid:PMC8375219 fatcat:pgtthawounfp7cqobazovyqhry

Text Categorization prior to Indexing for the CISMEF Health Catalogue [chapter]

Alexandrina Rogozan, Aurélie Néveol, Stefan J. Darmoni
2003 Lecture Notes in Computer Science  
This paper is positioned within the development of an automated indexing system for the CISMeF quality controlled health gateway.  ...  For disambiguation purposes, we wish to perform context identification prior to indexing.  ...  , and kindly put it at our disposal for research purposes.  ... 
doi:10.1007/978-3-540-39907-0_12 fatcat:5tjhsej3f5chzbtrfmgxcf4fn4

Best practice in reporting corona studies: Minimum information about Nanomaterial Biocorona Experiments (MINBE)

Andrew J. Chetwynd, Korin E. Wheeler, Iseult Lynch
2019 Nano Today  
Implementation of these guidelines is anticipated to catalyse enhanced quality, impact, and extent of data mining and computational modelling of protein corona composition and its role in nanosafety and  ...  The checklist for experimental design, compiled after review of reporting within the protein corona literature, provides researchers with prompts to ensure best practice experimental approaches for each  ...  Acknowledgements K.E.W. acknowledges support from the National Institute of Environmental Health Sciences of the National Institutes of Health (R15ES025929) and extends a warm thanks to Kris McNeill and  ... 
doi:10.1016/j.nantod.2019.06.004 pmid:32774443 pmcid:PMC7405976 fatcat:y5jzzdzfljb3jlic7afvzomr5e

Application of the Subspace-Based Methods in Health Monitoring of Civil Structures: A Systematic Review and Meta-Analysis

Hoofar Shokravi, Hooman Shokravi, Norhisham Bakhary, Mahshid Heidarrezaei, Seyed Saeid Rahimian Koloor, Michal Petrů
2020 Applied Sciences  
A large number of research studies in structural health monitoring (SHM) have presented, extended, and used subspace system identification.  ...  This study can assist practitioners and academicians for better condition assessment of structures and to gain insight into the literature.  ...  A numerical model of a 7-DOF and an experimental model of Chaotianmen bridge Computational efficiency and reject of the spurious modes without losing the quality are achieved.  ... 
doi:10.3390/app10103607 fatcat:ofku5nx7jrgefcmuysukjxjunq

Decentralization of Health and Education in Developing Countries: A Quality-Adjusted Review of the Empirical Literature

Anila Channa, Jean-Paul Faguet
2016 The World Bank Research Observer  
But when we organize quantitative evidence first by substantive theme, and thencruciallyby empirical quality and the credibility of its identification strategy, clear patterns emerge.  ...  This implies the transfer from national to subnational levels of government of: (i) authority over physical assets and human resources involved in service provision, (ii) responsibility for the quality  ...  nature of autonomy and participation by using an interaction model.  ... 
doi:10.1093/wbro/lkw001 fatcat:cjyyz4xiszeclfgf4sfb5jieza
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