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Fusion Gene Detection Using Whole-Exome Sequencing Data in Cancer Patients

Wenjiang Deng, Sarath Murugan, Johan Lindberg, Venkatesh Chellappa, Xia Shen, Yudi Pawitan, Trung Nghia Vu
2022 Frontiers in Genetics  
In summary, the overall results indicate that it is challenging to detect fusion genes in WES data with a standard coverage of ∼ 15–30x, where fusion candidates discovered in the RNA-seq data are often  ...  The result shows that two of the main AML fusion genes discovered in RNA-seq data, PML-RARA and CBFB-MYH11, are detected in the WES data in 36 and 63% of the available samples, respectively.  ...  Alternating Em Algorithm for a Bilinear Model in Isoform Quantification from Rna-Seq Data.  ... 
doi:10.3389/fgene.2022.820493 pmid:35251131 pmcid:PMC8888970 fatcat:dhinxc2udvdgba4ab76rwfiwo4

XVII Congress of the Italian Society of Experimental Hematology, Roma, Italy, March 31 – April 1-2, 2022

The Editors
2022 Haematologica  
In particular, the GSEA analysis performed on RNA-Seq data, exhibited an enrichment of many signatures, 5 of which were significantly overexpressed in BM and 11 downregulated in the EM localization, according  ...  At this point, a RNA-seq approach is needed but challenging for many aspects (genetic complexity, low frequency, cost), among them data analysis.  ...  model.  ... 
doi:10.3324/haematol.2022.s1 fatcat:s55yahndtzaq5avyg2bgofh4ze

Cereals for Food, Feed and Fuel-Challenge for Global Improvement BOOK OF ABSTRACTS Cereals for Food, Feed and Fuel-Challenge for Global Improvement BOOK OF ABSTRACTS Program

Ulrike Lohwasser, Andreas Börner, Ulrike Lohwasser, Andreas Börner
2014 unpublished
The work of other members of team and purchase of the infrastructure required for the research were funded from TÁMOP 4.2.2.A-11/1/KONV-2012-0064 project.  ...  Varga to this manuscript was carried out in the framework of TÁMOP 4.2.4.A/2-11-1-2012-0001 project, jointly funded by the European Union and the European Social Fund.  ...  The wheat transcript dataset in this study as well as our RNA-Seq data in rice is useful as valuable resources for wheat genomics and genetics.  ... 
fatcat:nm4upwpckrespfn32iesa7w4li