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Giant chest wall tumour invading the abdominal cavity: simultaneous reconstruction of the chest wall and hemidiaphragm

Aykut Altunkaya, Erol Aktunc, Mustafa Buyukates, Ozer Kandemir, Sitki Akin Turan, Ali Cevat Kutluk
2008 Canadian journal of surgery  
FIG. 1. Operative view showing en bloc resection of the tumour along with the right hemidiaphragm and the chest wall. Case note Can E31 Competing interests: None declared. FIG. 2. Operative view of the reconstruction process with insertion of 2-layer polytetrafluoroethylene mesh to fill the defect in the right hemidiaphragm and a Mersilene mesh and methylmetacrylate sandwich graft to close the chest wall.
pmid:18377735 pmcid:PMC2386335 fatcat:lihhps6m2zgkva2t7l4iue2yji

Recon3D enables a three-dimensional view of gene variation in human metabolism

Elizabeth Brunk, Swagatika Sahoo, Daniel C Zielinski, Ali Altunkaya, Andreas Dräger, Nathan Mih, Francesco Gatto, Avlant Nilsson, German Andres Preciat Gonzalez, Maike Kathrin Aurich, Andreas Prlić, Anand Sastry (+9 others)
2018 Nature Biotechnology  
To facilitate the future use of the Recon 3D GEM-PRO model, the procedure to collect sequence and structure information as described above has been consolidated into a shareable JSON file, which we call the "minimal" GEM-PRO needed to start structural analyses. This model assigns a single representative structure per gene in the reconstructed metabolic model, and is available at https:// github.com/SBRG/Recon3D. The accompanying software package required for reading and working with the GEM-PRO
more » ... JSON is available at https://github.com/SBRG/ssbio. This entire repository can be cloned to a user's computer and contains Jupyter notebooks in the root directory to guide a user through the content available in the Recon 3D GEM-PRO model (Recon3D_GP -Loading and Exploring the GEM-PRO.ipynb) as well as to update the model with revised sequence information or newly deposited structures in the PDB (Recon3D_GP -Updating the GEM-PRO.ipynb). This repository also includes all sequence and structure files mapped per gene, metadata downloaded through UniProt and the PDB, as well as the ability to rerun the QC/QA pipeline with different parameters such as sequence identity and resolution cutoffs. These notebooks also include basic visualization features enabled with the NGL viewer package 69 . All other scripts related to gene deletion simulations and infant growth simulations can be found at https://github.com/SBRG/ Recon3D. Abstract Genome-scale network reconstructions have helped uncover the molecular basis of metabolism. Here we present Recon3D, a computational resource that includes three-dimensional (3D) metabolite and protein structure data and enables integrated analyses of metabolic functions in humans. We use Recon3D to functionally characterize mutations associated with disease, and identify metabolic response signatures that are caused by exposure to certain drugs. Recon3D represents the most comprehensive human metabolic network model to date, accounting for 3,288 open reading frames (representing 17% of functionally annotated human genes), 13,543 metabolic reactions involving 4,140 unique metabolites, and 12,890 protein structures. These data provide a unique resource for investigating molecular mechanisms of human metabolism. Recon3D is available at http://vmh.life. Brunk et al.
doi:10.1038/nbt.4072 pmid:29457794 pmcid:PMC5840010 fatcat:rzyxsuaikffy5a6qf7jpbxnavu

Dexmedetomidine sedation during cataract surgery under regional anaesthesia

H. Ayoglu, H. Altunkaya, Y. Ozer, O. Yapakci, I. Ozkocak, O. Oz, A. Alpay, S.H. Ugurbas
2007 British Journal of Anaesthesia  
Jaakola ML, Ali-Melkkila T, Kanto J, Kallio A, Scheinin H, Scheinin M.  ...  Altunkaya Y. Ozer O. Yapakci I. Ozkocak O. Oz A. Alpay S. H. Ugurbas Zonguldak, Turkey *E-mail: periayogluzku@yahoo.com 1 Murphy DF. Anaesthesia and intraocular pressure.  ... 
doi:10.1093/bja/aem226 pmid:17702833 fatcat:wkrcmhjbqrbz7hjxekin3ejfk4

BJP volume 220 issue 2 Cover and Front matter

2022 British Journal of Psychiatry  
severe mental illness: Grant et al Orri et al systematic review Altunkaya  ...  Associate Editors Stuart Watson (UK) (The Netherlands) Shehzad Ali  ... 
doi:10.1192/bjp.2021.211 fatcat:4qaxtir4enavhajmfq425tvfmu

ZİNA VEYA HAYATA KAST NEDENİYLE ARTIK DEĞERDEKİ PAY ORANININ AZALTILMASI VEYA KALDIRILMASI (TMK m. 236/II)

Fahri Erdem Kaşak
2020 Ankara Sosyal Bilimler Üniversitesi Hukuk Fakültesi Dergisi  
Ali İhsan Özuğur, Mal Rejimleri (Ankara: Seçkin Yayıncılık, 2008), 71.  ...  Altunkaya, 402; Hatemi, N 447.  ... 
doaj:79dacbdb05c648c4bad06d74c15420d4 fatcat:ir3rckcaobab3kxhkcjuulkhmi

Contents Vol. 56,2012

2012 Acta Cytologica  
.; Altunkaya, C.; Yılmaz, S.; Barın, A.; Ekici, S.; Çaydere, M. (Ankara) Sojitra, P.; Venkataraman, G.; Masoom, S.; Kapur, U.; Wojcik, E.M. (Maywood, Ill.) 413  ...  .; Ali, S.Z. (Baltimore, Md.) 25 Cytopathologic Analysis of Stroma-Poor Salivary Gland Epithelial/Myoepithelial Neoplasms on Fine Needle Aspiration Chen, L.; Ray, N. (Cleveland, Ohio); He, H.  ... 
doi:10.1159/000345289 fatcat:ajoc3gp6zjebxknteo2ic7v6tm

Buffalo cheese whey hydrolyzed with Alcalase as an antibrowning agent in minimally processed apple

José Dilson Francisco da Silva, Ana Paula Folmer Correa, Carolina Pereira Kechinski, Adriano Brandelli
2018 Journal of food science and technology  
Naturally, proteins may exhibit antioxidant activity and PPO inhibition capacity (Perez-Gago et al. 2006; Altunkaya 2011) .  ...  Unlike melanins, products resulting from the reactions between o-quinones and thiol groups are colorless (Ali et al. 2015) .  ... 
doi:10.1007/s13197-018-3303-y pmid:30150833 fatcat:bjxqx43ezjeyzkbnlb53xq2w6y

Zühd/Sûf Hareketinden İslam'ın Ana Akım 3T Eğilimlerine Zühd Çağının (M. 610-710) Teo-Stratejisi

Mustafa Altunkaya
2018 Zenodo  
Osman (r) ve Ali (r)'nin ölümüyle sonuçlanan acı hadiselerin akabinde başarısız gibi görülen Medine ekolünün, uzun vadede başarılı olduğunu söylemek mümkündür.  ...  Medine ekolünün öncü isimleri arasında Bilal (ö. 640), İbn Mesud (ö. 650), Ebuzer (ö. 652), Ammar (ö. 657), Ali (ö. 661), İbn Ebubekir (ö. 658), İbn Ömer (ö. 693) vardı.  ...  Ali (ö. 680) tarafından devam ettirildi.  ... 
doi:10.5281/zenodo.2560946 fatcat:ycx6gxmvuvbanoudqi4g2z4sja

Reducing Disturbance in Parking System by Using Quality Function Deployment (QFD) Method

Muhammad Ashlyzan Razik, Noorshella Che Nawi, Asrul Hery Ibrahim Dzulkifli Mokhtar, Norlinda Mohd Rozar
2019 Research in World Economy  
It was agreed aspects of the 10 elements on the technical aspects that were required for PSI (Ali & Haseeb 2019).  ...  Figure 1 . 1 Altunkaya & Ates 2018). ISSN 1923-3981 E-ISSN 1923-399X Model Development for Quality Function Deployment (QFD) Figure 1 shows the proposed modified QFD model.  ... 
doi:10.5430/rwe.v10n2p6 fatcat:j32nonwburdi3j4opi7q36d4tm

Bazı Şia Kaynaklarda "Tasavvuf"

Mustafa ALTUNKAYA
2016 Turkish Studies  
Ali b.  ...  BAZI ŞİÎ KAYNAKLARDA "TASAVVUF" Mustafa ALTUNKAYA * ÖZET Tasavvuf tarihinde önemli bir yeri bulunan İran coğrafyası ve Şi'a düşüncesi, günümüz tasavvuf araştırmalarında dikkat çekici, önemli ve kısmen  ... 
doi:10.7827/turkishstudies.9392 fatcat:7frh3or64zad7dltgwsrcfsp3i

YABANCI DİL OLARAK TÜRKÇE ÖĞRENEN ÖĞRENCİLERİN DİL BİLGİSİ ÖĞRENİMİNE YÖNELİK KAYGI DÜZEYLERİ

Sefa AYHAN- Fatih KANA
2019 The Journal of Turk-Islam World Social Studies  
, 2017; Altunkaya ve Erdem, 2017) .  ...  Mesela Ali gelmiş, bunu anlıyordum ama Ali dün gelmişti, denirse anlamıyordum. Endişe yaratıyordu." (K2, Çeviri kaygısı) "Derste dil bilgisini, konuyu unuttuğumda korkuyordum."  ... 
doi:10.29228/tidsad.39794 fatcat:dqvyldd52bcuxoyxkl2hdnyadi

Antioxidant, Polygalacturonase, Pectin Methylesterase and Polyphenol Oxidase Activities of Fresh-Cut Wax Apple (Syzygium samarangense) Treated with Organic Acids

Y. Awang, K. Nur Izzah, P. Ding, Y. Hafiza, M.G.M. Satar
2015 Asian Journal of Plant Sciences  
The activity of PME was calculated following method of Ali et al. (2004) .  ...  In general, ascorbic acid acts as reducing agent would inhibit the browning reaction by reducing quinones to diphenol or reduces the Cu 2+ to Cu + at the active site of PPO (Altunkaya and Gokmen, 2008  ... 
doi:10.3923/ajps.2015.72.77 fatcat:wyvxpwkknfgp3j44nlk35thieq

Effects of Lidocaine on Post-Tonsillectomy Pain in Children: A Triple-Blind Clinical Trial

Akbar Pirzadeh, Mohammad Ali Mohammadi, Sooreh Allaf-Akbari, Khatereh Isazadehfar, Masoud Entezariasl
2013 مجله دانشکده پزشکی اصفهان  
Dal D, Tetik O, Altunkaya H, Tetik O, Doral MN. tonsillectomy. A placebo-controlled clinical The efficacy of intra-articular ketamine for trial.  ... 
doaj:48e76aacdc364e08a3a9586f8c6f8fe9 fatcat:oygkwizqnrclleznry6ikpf7xm

YABANCI DİL OLARAK TÜRKÇE ÖĞRETİMİNDE KAYNAKÇA ÇALIŞMASI-I

Enes GÜLEÇ- Mustafa ÖZDEMİR
2020 Çukurova Araştırmaları Dergisi  
Erdem, İlhan; Altunkaya, Hatice ve Ateş, Ayşe (2017). Yabancı Dil Olarak Türkçe Öğrenenlerin Okur Özyeterlikleri ile Okuduğunu Anlama Becerileri Arasındaki İlişki. 1.  ...  ., Peçenek, Dilek ve Durmuş, Ali Osman (2018). Yabancı Dil Olarak Türkçe İlk Kazanımlar İçin Başvuru Rehberi. Kurmay Yayınevi.  ... 
doi:10.29228/cukar.43139 fatcat:bpvrccu2v5bqrizo5qq3iy23my

Application of Plant-Based Edible Film and Coatings for Minimally Processed Fruits and Vegetables

Ali Kozlu, Yeşim Elmacı
2019 Turkish Journal of Agriculture: Food Science and Technology  
ISBN: 9789944566087 Altunkaya A, Gokmen V. 2008. Effect of various inhibitors on enzymatic browning, antioxidant activity and total phenol content of fresh lettuce (Lactuca sativa).  ...  amacıyla yapılan bir çalışmada potensiyel ajan olarak askorbik asit ve sistein kullanıldığında marul fenoliklerinin oksidasyondan korunduğu ve üründe antioksidan aktivitenin arttırıldığı bildirilmiştir (Altunkaya  ... 
doi:10.24925/turjaf.v7i9.1387-1396.2658 doaj:4599f8e529c04baa9a728b7f64ec3484 fatcat:hedyxwcscbar7hmfyhshyzyfby
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