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Sequential Injection Analysis for Optimization of Molecular Biology Reactions

Peter B. Allen, Andrew D. Ellington
2011 Analytical Chemistry  
) algorithm.  ...  The device and method should now be amenable to much more complex molecular biology reactions whose variable spaces are correspondingly larger.  ...  of molecular biology reactions has never before been developed.  ... 
doi:10.1021/ac103098u pmid:21338059 pmcid:PMC3079553 fatcat:mujayeoxojg3jaswbhmbuvd2au

Preface

Sorin Istrail, Pavel Pevzner, Ron Shamir
2007 Discrete Applied Mathematics  
Preface This is the fifth installment in the Discrete Applied Mathematics series on computational molecular biology, which is devoted to combinatorial and algorithmic techniques in computational molecular  ...  This series publishes novel research results on the mathematical and algorithmic foundations of the inherently discrete aspects of computational biology. The previous volumes in the series were ).  ...  Today the development of biology and medicine depend to a tremendous extent on using computers for data handling and for sophisticated analysis.  ... 
doi:10.1016/j.dam.2006.09.001 fatcat:qjuijfdypvemhhvje7hagnxsru

Front Matter, Table of Contents, Preface, Conference Organization

Katharina T. Huber, Dan Gusfield, Michael Wagner
2019 Workshop on Algorithms in Bioinformatics  
Extended versions of selected papers have been invited for publication in a thematic series in the journal Algorithms for Molecular Biology (AMB), published by BioMed Central.  ...  The workshop is intended as a forum for discrete algorithms and machine-learning methods that address important problems in biology (particularly problems based on molecular data and phenomena); that are  ... 
doi:10.4230/lipics.wabi.2019.0 dblp:conf/wabi/X19 fatcat:35jsf7imqre4vkm7dnosb6yepu

Front Matter, Table of Contents, Preface, Conference Organization

Carl Kingsford, Nadia Pisanti
2020 Workshop on Algorithms in Bioinformatics  
Extended versions of selected papers have been invited for publication in a thematic series in the journal Algorithms for Molecular Biology (AMB), published by BioMed Central.  ...  The Workshop on Algorithms in Bioinformatics is an annual conference established in 2001 to cover all aspects of algorithmic work in bioinformatics, computational biology, and systems biology.  ... 
doi:10.4230/lipics.wabi.2020.0 dblp:conf/wabi/X20 fatcat:dp3wjqfinbhhjoetffysswes3m

Underdeveloped territories of bioinformatics

John C. Wootton
1996 Nature Biotechnology  
BIOTECHNOLOGY VOLUME 14 OCTOBER 1996 Molecular biology has attracted a num- ber of computer scientists seeking applica- tion domains for emerging, experimental computational methodologies, including  ...  ry, however, especially as jargon abounds and some genetic terms have different meanings in biology than they do in genetic algorithms.  ... 
doi:10.1038/nbt1096-1303a fatcat:cpsaetv2brcohpesr24slief5i

ConStruct: Improved construction of RNA consensus structures

Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
2008 BMC Bioinformatics  
We evaluated gene expression from 7 As sugg maSigPro user manual, we applied the GLM method. eBook (PDF) Biochemistr Laboratory Manual, Molecular Biology and molecular biology while incorporati blossoming  ...  of brain volume.  ... 
doi:10.1186/1471-2105-9-219 pmid:18442401 pmcid:PMC2408607 fatcat:byou6srcxzeybjcpudlgumgwhe

Front Matter, Table of Contents, Preface, List of Authors

Russell Schwartz, Knut Reinert, Marc Herbstritt
2017 Workshop on Algorithms in Bioinformatics  
Extended versions of selected papers will be invited for publication in a thematic series in the journal Algorithms for Molecular Biology (AMB), published by BioMed Central.  ...  The workshop is intended as a forum for discrete algorithms and machine-learning methods that address important problems in molecular biology, that are founded on sound models, that are computationally  ... 
doi:10.4230/lipics.wabi.2017.0 dblp:conf/wabi/X17 fatcat:pyzz4nhmp5bxtnadowsbrxzfiy

Current Advances in Molecular Phylogenetics

Vassily Lyubetsky, William H. Piel, Dietmar Quandt
2014 BioMed Research International  
Computational power is at risk of being outstripped because the volume of NGS data more than doubles each year, outpacing Moore's Law [10] .  ...  New concepts are developing that tackle various aspects of coevolution, including approaches to defining and algorithmically constructing complex evolutionary scenarios for genetic systems, their regulations  ...  Computational power is at risk of being outstripped because the volume of NGS data more than doubles each year, outpacing Moore's Law [10] .  ... 
doi:10.1155/2014/596746 pmid:24809056 pmcid:PMC3997973 fatcat:gbsq4g6lhzh7jjveh7zh22wtcy

A programming course in bioinformatics for computer and information science students

R B Altman, J Koza
1996 Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing  
We have created a course entitled "Representations and Algorithms for Computational Molecular Biology" with three specific goals in mind.  ...  First, we want to provide a technical introduction for computer science and medical information science students to the challenges of computing with molecular biology data, particularly the advantages  ...  Computing molecular surfaces and molecular volumes.  ... 
pmid:9390224 fatcat:mjmmzaqyxvcmtnjpu4dp6otgjy

ISCB Honors Michael S. Waterman and Mathieu Blanchette

Merry Maisel
2006 PLoS Computational Biology  
The author received no specific funding for this article.  ...  The prize will be awarded at the ISCB annual meeting, Intelligent Systems for Molecular Biology, to be held in Fortaleza, Brazil, from August 6 through 10, 2006 Blanchette said: ''Computational biology  ...  The award will be presented to Waterman at the ISCB's annual meeting, Intelligent Systems for Molecular Biology (ISMB) in Fortaleza, Brazil, from August 6 through 10, 2006. Dr.  ... 
doi:10.1371/journal.pcbi.0020105 fatcat:vkkwxpsr7faxbfrixr3tyccham

Book Review

Anthony M George
2003 Clinical and Experimental Pharmacology and Physiology  
ISBN 1064-3745 On perusing the titles of the 19 chapters of this new volume in the Methods in Molecular Biology Series, there is a striking difference from similar books compiled, say, 5-10 years ago.  ...  Clinical and Experimental Pharmacology and Physiology (2003) 30, 909 BOOK REVIEW Methods and Protocols, Methods in Volecular Biology, volume 227 Membrane Transporters Edited by Q Yan.  ... 
doi:10.1046/j.1440-1681.2003.03915.x fatcat:d7k3ugklara5vb2swim7gtq3fy

Large-Scale Machine Learning Approaches for Molecular Biophysics

Arvind Ramanathan, Chakra S. Chennubhotla, Pratul K. Agarwal, Christopher B. Stanley
2015 Biophysical Journal  
In this talk I will show examples for which a combination of mathematics, physics, and biology provides solutions to these challenges.  ...  Extracting knowledge from large, heterogeneous, unstructured and highdimensional data is one of the major challenges for large-scale machine learning algorithms.  ...  Based on simple ideas for modeling a large system, I will report several new discoveries and testable predictions from our computational studies. 370a Tuesday, February 10, 2015  ... 
doi:10.1016/j.bpj.2014.11.2027 fatcat:cm3heuxiebgrfiqkb5xitit3ma

Reversible Folding of Hyperstable RNA Tetraloops Using Molecular Dynamics Simulations

Angel E. Garcia, Jacob Miner, Alan A. Chen
2015 Biophysical Journal  
In this talk I will show examples for which a combination of mathematics, physics, and biology provides solutions to these challenges.  ...  Extracting knowledge from large, heterogeneous, unstructured and highdimensional data is one of the major challenges for large-scale machine learning algorithms.  ...  Based on simple ideas for modeling a large system, I will report several new discoveries and testable predictions from our computational studies. 370a Tuesday, February 10, 2015  ... 
doi:10.1016/j.bpj.2014.11.2029 fatcat:edclqo6iijdwvjduhk3r3w5tkq

Precise Measurement of the Relative Position of RNA Dimers within Virus-Like Particles using 2-Color 3D Super-Resolution Fluorescence Microscopy

Matthew D. Lew, Olga A. Nikolaitchik, Wei-Shau Hu, W.E. Moerner
2014 Biophysical Journal  
There is therefore an ongoing interest in the development of improved chromophores for biology, especially ones that absorb and emit in the near-infrared.  ...  with <10 nm registration error in 3D (4).  ...  Molecular and Computational Biology, University of Southern California, Los Angeles, CA, USA.  ... 
doi:10.1016/j.bpj.2013.11.2252 fatcat:u5u56fmoi5an3hrymg7scfai2y

Structural and Dynamic Study of Caveolin-1 Membrane Microdomains by Single Molecule Imaging

Ramunas Stanciauskas, Fabien Pinaud
2014 Biophysical Journal  
There is therefore an ongoing interest in the development of improved chromophores for biology, especially ones that absorb and emit in the near-infrared.  ...  with <10 nm registration error in 3D (4).  ...  Molecular and Computational Biology, University of Southern California, Los Angeles, CA, USA.  ... 
doi:10.1016/j.bpj.2013.11.2250 fatcat:xlc6kbiklzf2johs7dak2hqvkq
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