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Crystal Structure of Protein Isoaspartyl Methyltransferase

Matthew M Skinner, Joseph M Puvathingal, Richard L Walter, Alan M Friedman
<span title="">2000</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/y4oayrlrkfebxgzkm3rrzcps2m" style="color: black;">Structure</a> </i> &nbsp;
M. F. would like to thank Dr. Peter Blier for first bringing isoaspartyl Crystallization formation to his attention. We would like to thank Dr. V.  ...  The dashed lines in M. HhaI and M. TaqI indicate the additional target recognition domain.  ...  AdoMet was assigned partial charges based on and 0.84 M ammonium sulfate and further purified on SOURCE 15ETH.  ... 
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Mechanisms of Belief-Desire Reasoning

Ori Friedman, Alan M. Leslie
<span title="">2004</span> <i title="SAGE Publications"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/g33xxa5hmvfujlgf7u62jxo2em" style="color: black;">Psychological Science</a> </i> &nbsp;
and Alan M.  ...  8 months to 8 years 7 months (M 5 6 years 7 months, SD 5 1 year 6 months).  ... 
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In Memoriam: Steven M. Podos, MD (1937-2009)

Alan H. Friedman
<span title="2010-02-01">2010</span> <i title="American Medical Association (AMA)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xk3e6rxghbe6deizzubhwnayna" style="color: black;">Archives of Ophthalmology</a> </i> &nbsp;
OBITUARY In Memoriam: Steven M. Podos, MD (1937-2009) S teve Podos died on October 10, 2009, of com-  ...  Sun XC, Li J, Cui M, Bonanno JA. Role of carbonic anhydrase IV in corneal endothelial HCO3-transport. Invest Ophthalmol Vis Sci. 2008; 49( Steve was the consummate academic ophthalmologist.  ... 
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Restriction Enzyme BsoBI–DNA Complex

Mark J van der Woerd, John J Pelletier, Shuang-yong Xu, Alan M Friedman
<span title="">2001</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/y4oayrlrkfebxgzkm3rrzcps2m" style="color: black;">Structure</a> </i> &nbsp;
The helices of this motif often form a four-helix bundle with from ␣C, ␣H, ␤3, and ␣M of BsoBI, all outside the CCM.  ...  Results and Discussion g Figure of merit is defined as m ϭ ͐P(␣)exp(i␣)d␣/͐P(␣)d␣. h Crystallographic residual is defined as R ϭ ⌺|F obs Ϫ F calc |/⌺|F obs |,Crystallization and Structure Determinationwhere  ... 
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Algorithms for optimizing cross-overs in DNA shuffling

Lu He, Alan M Friedman, Chris Bailey-Kellogg
<span title="">2012</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
Even though in our study we used only moderately large triple stores (~11 M triples), others demonstrated that Virtuoso excels when confronted with much larger stores, up to 100-200 M triples [19, 22]  ... 
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Core mechanisms in 'theory of mind'

Alan M. Leslie, Ori Friedman, Tim P. German
<span title="">2004</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2gvktplqc5gm7mwsea6qgdwy4m" style="color: black;">Trends in Cognitive Sciences</a> </i> &nbsp;
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A developmental shift in processes underlying successful belief-desire reasoning

Ori Friedman, Alan M. Leslie
<span title="">2004</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sjomsvi4zngnnh4gx5bz2onwye" style="color: black;">Cognitive Science</a> </i> &nbsp;
M., & Polizzi, P. (1998) . Developmental Science, 1, 247-254].  ...  One of these, the "Inhibition of Return" model, has recently been ruled out as an account of children's belief-desire reasoning (Friedman & Leslie, 2004; Leslie, Friedman, et al., in press; Leslie, German  ...  This model has already been ruled out for children's belief-desire reasoning (Friedman & Leslie, 2004; Leslie, Friedman, et al., in press; Leslie, German, et al., in press) and is further contradicted  ... 
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Processing demands in belief-desire reasoning: inhibition or general difficulty?

Ori Friedman, Alan M. Leslie
<span title="">2005</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dhvr63reyja5pdq73brsoesphe" style="color: black;">Developmental Science</a> </i> &nbsp;
Ori Friedman and Alan M. Leslie © Blackwell Publishing Ltd. 2005 © Blackwell Publishing Ltd. 2005 Ori Friedman and Alan M.  ...  Leslie © Blackwell Publishing Ltd. 2005 Ori Friedman and Alan M. Leslie © Blackwell Publishing Ltd. 2005 Prediction. Which box will Billy go to with his clean hat?  ... 
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<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151023191148/http://ruccs.rutgers.edu/~aleslie/images/publications/Friedman%20Leslie%202005.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ef/3f/ef3fe6f9ed59d524d58ca9621cf896bf390f516f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/j.1467-7687.2005.00410.x"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

The conceptual underpinnings of pretense: Pretending is not 'behaving-as-if'

Ori Friedman, Alan M. Leslie
<span title="">2007</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wwxrdovfqrafvnk7lbwpujzttq" style="color: black;">Cognition</a> </i> &nbsp;
Leslie and Thaiss (1992) coined the term M-representation as a synonym for use in contexts where it is desirable to distinguish this earlier use fromPerner's. 4 Note that, although N&S borrow the idea  ...  ., 2004; Leslie, 1987 Leslie, , 1994a Leslie, , 2000a Leslie, , 2000b Leslie, Friedman, & German, 2004; Leslie & Frith, 1990; Leslie, German, & Polizzi, 2005; Leslie & Roth, 1993; Leslie & Thaiss, 1992  ... 
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Planning combinatorial disulfide cross-links for protein fold determination

Fei Xiong, Alan M Friedman, Chris Bailey-Kellogg
<span title="">2011</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
Thus: ∈= ⋅ ⋅ < ′ ∈ ′≠ ∈ ∑ ∑ Pr( ) Pr( | ) (Pr( | ) max Pr( | )) m X m X m X m m M m m X 1  (9) where Pr(m) is the prior probability of a model, which we currently take as uniform, but could instead be  ...  m X m m M m m X 1 1  (10) The formula mirrors that for ∊, but instead of counting the number of incorrect decisions, it counts the fraction of ties.  ... 
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Response to "The Dawn of Quantified Humanism"

Elizabeth Cleek, Alan M. Friedman, Brianne Alcala
<span title="">2018</span> <i title="Journal of Graduate Medical Education"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fyzzwwxwmfahhn4f2iib24j4rm" style="color: black;">Journal of Graduate Medical Education</a> </i> &nbsp;
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4300/jgme-d-17-00758.1">doi:10.4300/jgme-d-17-00758.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29467985">pmid:29467985</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5821007/">pmcid:PMC5821007</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6q7u354p55ezfazcshikesgwz4">fatcat:6q7u354p55ezfazcshikesgwz4</a> </span>
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Tricellulin Is a Tight-Junction Protein Necessary for Hearing

Saima Riazuddin, Zubair M. Ahmed, Alan S. Fanning, Ayala Lagziel, Shin-ichiro Kitajiri, Khushnooda Ramzan, Shaheen N. Khan, Parna Chattaraj, Penelope L. Friedman, James M. Anderson, Inna A. Belyantseva, Andrew Forge (+2 others)
<span title="">2006</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ho5llzhlhzhmrlusxzz4j2bery" style="color: black;">American Journal of Human Genetics</a> </i> &nbsp;
Griffith, M. Kelley, R. Morell, S. Sullivan, J. Schultz, and J. Cyr. We thank D. Utepbergenov for technical advice and for providing the insect cell-expression system for ZO-1, and we acknowledge Z.  ...  Proteins were extracted and denatured by boiling for 5 min in SDS-PAGE sample buffer (0.125 M Tris-HCl, 20% glycerol, 4% SDS, and 0.005% Bromo-phenol blue).  ...  Fixative (2.5% glutaraldehyde in 0.1 M cacodylate buffer with 3 mM CaCl 2 ) was gently injected into the inner ear through these openings, and the entire bulla was then immersed in fixative.  ... 
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OPTIMIZING BAYES ERROR FOR PROTEIN STRUCTURE MODEL SELECTION BY STABILITY MUTAGENESIS

Xiaoduan Ye, Alan M. Friedman, Chris Bailey-Kellogg
<span title="">2008</span> <i title="PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO."> Computational Systems Bioinformatics </i> &nbsp;
set of candidates C: Optimality(M, C) ≥ lb(C, |M |) ub(M ) (12) where ub(M ) is the upper bound we previously discussed (Eq. 7, Eq. 9) and we develop below lb(C, |M |), a lower bound on the Bayes error  ...  MutPlanBB(m, λ, ub * , Ψ, S, C) if |S| + |C| = m # only one possible plan S ← S C C ← ∅ if constraintsSatisfied(S) and lb(S C, m)/ub * ≤ λ if |S| = m Ψ ← Ψ {S} ub * ← min{ub(S), ub * } else for i from  ... 
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Latitudinal variation in cold hardiness in introducedTamarixand nativePopulus

Jonathan M. Friedman, James E. Roelle, John F. Gaskin, Alan E. Pepper, James R. Manhart
<span title="">2008</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hnstxxau2bbjhkazfbxx7sdac4" style="color: black;">Evolutionary Applications</a> </i> &nbsp;
Blumenthal, M. Scott, G. Auble, and two anonymous reviewers.  ...  The sampled populations occurred as bands 2-200 m wide along the shore of a river or reservoir.  ...  River, OK 37.12 101.89 1036 25 25 14 18 Lake Meredith, Mullinaw Creek, TX 35.53 101.77 896 25 25 9 14 Buffalo Lake National Wildlife Refuge, TX 34.90 102.12 1105 25 25 17 18 Lake Alan  ... 
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Self-force on an accelerated particle

Thomas M. Linz, John L. Friedman, Alan G. Wiseman
<span title="2014-07-23">2014</span> <i title="American Physical Society (APS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/chloqzh6grayjgjxdzjq5ktthu" style="color: black;">Physical Review D</a> </i> &nbsp;
The finite range of the sum over m allows the definitions f ret, ± α := q m=− lim r→r ± 0 ∇ α Φ ret, m (t = 0, r)Y m (θ 0 , φ 0 ), (59a) f sing, ± α := q m=− lim r→r ± 0 ∇ α Φ sing, m (t = 0, r)Y m (θ  ...  =m j   1 2 + 1 − 2m j = m j −1 =0 1 2 + 1 − 2m j − m j −1 =0 1 2 + 1 − 2m j = 0, (B5) where = 2m j − 1 − .  ...  Now, we can write the symmetric term, F +, as where b ≡ r 0 − M .  ... 
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