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Collaborative scientific workflows supporting collaborative science
2011
International Journal of Business Process Integration and Management
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The convergence of the above two trends naturally leads to the concept of collaborative scientific workflows. ...
Collaboration has become a dominant feature of modern science. Many scientific problems are beyond the realm of individual discipline or scientist to solve and hence require collaborative efforts. ...
In summary, the lack of collaboration support and interoperability among SWFMSs has largely limited the potential of using scientific workflows to enable and accelerate scientific discovery and to solve ...
doi:10.1504/ijbpim.2011.040209
fatcat:5op5on2xgffhjabh7wgjrfuhai
Efficiently supporting secure and reliable collaboration in scientific workflows
2010
Journal of computer and system sciences (Print)
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We also present a case study in a scientific research scenario to show the effectiveness of our approaches. ...
The proposed approaches combine control flows and data flow models to describe scientific workflows, and extend the atomicity sphere concept by considering two levels of atomicity abstraction at the level ...
Evaluation In this section, we exemplify the usage of the approach presented in this paper for supporting reliable collaboration. ...
doi:10.1016/j.jcss.2009.11.008
fatcat:vjjpdlqrpnbhxdz5no5wcghode
Collaborative Scientific Workflows
2009
2009 IEEE International Conference on Web Services
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As more scientific research projects become collaborative in nature, there is a compelling need of dedicated services to support collaborative scientific workflows on the Internet. ...
This paper reviews the state of the art of the field of scientific workflows towards the support of collaborative scientific workflows, identifies critical research challenges, and presents our ongoing ...
, and effective modeling and management of interaction, coordination, collaboration among workflows, tasks, datasets, organizations, groups, and individuals. ...
doi:10.1109/icws.2009.150
dblp:conf/icws/LuZ09
fatcat:uixs7xfwond7ncnairul5yheje
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach
2022
Journal of Biomedical Semantics
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We have applied and evaluated our approach to a set of scientific experiments in different subject domains like computational science, biological imaging, and microscopy. ...
Results We present the "REPRODUCE-ME" data model and ontology to describe the end-to-end provenance of scientific experiments by extending existing standards in the semantic web. ...
Acknowledgements We thank Christoph Biskup, Kathrin Groeneveld and Tom Kache from University Hospital Jena, Germany, for providing the requirements to develop the proposed approach and evaluating the system ...
doi:10.1186/s13326-021-00253-1
pmid:34991705
pmcid:PMC8734275
fatcat:lwc57qbra5bcxiadcrimbufezi
Towards a Workflow Management Approach for Health Monitoring of Bridges
[chapter]
2014
IFIP Advances in Information and Communication Technology
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This paper introduces a scientific workflow management approach to model and execute strategic SHM queries that require proper integration of data generated by different software components. ...
In brief, Structural Health Monitoring (SHM) refers to the storage and analysis of large amounts of sensor data associated to specific variables that indicate the condition of a civil structure, e.g. a ...
The authors of this paper wish to acknowledge the valuable contributions from all colleagues and partners of the e-Bridge 2.0 project. ...
doi:10.1007/978-3-662-44745-1_49
fatcat:57giknd35bbcpnagtzirp2q55q
Understanding the Practice of Discovery in Enterprise Big Data Science: An Agent-based Approach
2015
Procedia Manufacturing
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Using a simulation system based onthe practice-based approach to work study, the concept of bounded rationality,and the Gaia methodology for simulating organizations, we model big data science as an activity ...
In this era of big data science, with heavy reliance on crowd-sourced data, open innovation, and collaborative analytics, the effect of the social and material realms on the process and practice of discovery ...
Like these authors, we are interested in modeling the effect of organizational policies on a scientific process. ...
doi:10.1016/j.promfg.2015.07.345
fatcat:ywzlpv7upveuxjhctcyehnhhli
Putting "Human Crowds" in the Loop of Bibliography Evaluation: A Collaborative Working Environment for CSCW Publications
2013
Procedia Technology - Elsevier
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This paper reports on a work in progress semantic analytics focused on what scientific research da of intellectual labor among social, computer, and citizen to traditional bibliometric approaches, attempting ...
The current impact of financial crisis on societal and scien volumes of data in a socially-mediated interaction contex scale. ...
Acknowledgements This work is funded (or part-funded) by the ERDF -European Regional Development Fund through the COMPETE Programme (operational programme for competitiveness) and by National Funds through ...
doi:10.1016/j.protcy.2013.12.064
fatcat:3eduoyuiejdczihyufwijvmqai
CI-Miner: semantically enhancing scientific processes
2009
Earth Science Informatics
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The discussion is grounded on lessons learned through the use of CI-Miner to semantically annotate scientific processes in the areas of geo-sciences, ...
This article introduces the CI-Miner approach that can be used to aggregate knowledge about scientific processes and their products through the use of semantic annotations. ...
Acknowledgements This work was supported in part by NSF grants HRD-0734825 and EAR-0225670. ...
doi:10.1007/s12145-009-0038-3
fatcat:vbesziu2ebaw3l3qs5gyk6a7qm
Towards A Methodology and Framework for Workflow-Driven Team Science
[article]
2019
arXiv
pre-print
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However, data and computing advances continuously change the way scientific workflows get developed and executed, pushing the scientific activity to be more data-driven, heterogeneous and collaborative ...
and scalable activities in the scientific process. ...
The authors would also like to thank Workflows for Data Science (WorDS) Center of Excellence team members Mai Nguyen and Volkan Vural for their participation in the discussions leading to this paper. ...
arXiv:1903.01403v1
fatcat:ubbe6qk5kfb77erhetvp25jele
An agent-based model of interdisciplinary interactions in science
[article]
2020
arXiv
pre-print
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This paper introduces a parcimonious agent-based model of interdisciplinary relationships in collective entreprises of knowledge discovery, to investigate the impact of scientist-level decisions and preferences ...
Different structures for collaboration networks may also yield various outcomes in terms of global interdisciplinarity. ...
[Shafiee and Berglund, 2019] use an agent-based model to simulate the impact of a workflow to process data under different collaboration scenarios. ...
arXiv:2006.16399v1
fatcat:5qb4o64sn5avfdi4pqatj6ieyq
Confucius: A Tool Supporting Collaborative Scientific Workflow Composition
2014
IEEE Transactions on Services Computing
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The collaboration protocols are then applied to support effective concurrency control in the process of collaborative workflow composition. ...
However, such workflows may have to be designed and revised among multiple scientists over a long time period. ...
ACKNOWLEDGMENT The authors thank Sha Liu for the assistance in the presented experimental study. This work is supported by National Science Foundation, under grants NSF IIS-0959215 and IIS-0960014. ...
doi:10.1109/tsc.2012.13
fatcat:s6sg3zpmpfau7k6jbbmvq7oat4
Cloud Data Management for Scientific Workflows: Research Issues, Methodologies, and State-of-the-Art
2014
2014 10th International Conference on Semantics, Knowledge and Grids
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As all the data are managed in the cloud, it is easy to share data among scientists. This kind of model is very convenient for users, but remains a big challenge to the system. ...
Scientists can upload their data and launch their applications on the scientific cloud workflow systems from everywhere in the world via the Internet, and they only need to pay for the resources that they ...
Acknowledgement The research work reported in this paper is partly supported by National Natural ...
doi:10.1109/skg.2014.37
dblp:conf/skg/YuanCL14
fatcat:suphvnfsujgc3ps2tbvsj6zaya
Achieving Team-Awareness in Scientific Grid Environments
2008
2008 Seventh International Conference on Grid and Cooperative Computing
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The vision of the Scientific Web is to enable research scientists to collaborate in a ubiquitous manner; sharing resources, data, and insights how to perform experiments. ...
In this paper we introduce an approach to enhance current grid infrastructures with awareness of team interactions. ...
Acknowledgment Part of this work was supported by EU FP6 project in-Context (034718). ...
doi:10.1109/gcc.2008.13
dblp:conf/gcc/DornSD08
fatcat:v4hicjtgbrhczewtaxwahzedjq
Semantic support for computational land-use modelling
2005
CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.
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In this paper we explore the use of proposed Semantic Grid standards and methodology through deployment of a land use modelling service. ...
We also discuss ontology support for simulation parameters, hypotheses and results that will facilitate sharing and re-use of such resources among land-use scientists. ...
In our opinion the FEARLUS-G argument structure approach is likely to be more intuitive to user scientists, reflecting as it does the evidence-based approach widely used within the scientific community ...
doi:10.1109/ccgrid.2005.1558649
dblp:conf/ccgrid/PignottiEPPG05
fatcat:zg46466ikfbcljyceyrcngvbua
Formalizing an Integrative, Multidisciplinary Cancer Therapy Discovery Workflow
2013
Cancer Research
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The developed template outlines an interdisciplinary collaboration workflow designed to systematically investigate the mechanistic underpinnings of a new therapy and validate that therapy to advance development ...
Although many clinicians and researchers work to understand cancer, there has been limited success to effectively combine forces and collaborate over time, distance, data, and budget constraints. ...
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. ...
doi:10.1158/0008-5472.can-13-0310
pmid:23955390
pmcid:PMC4040396
fatcat:sl6ldp4aojh6vjzuvp2ptsau4e
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