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Collaborative scientific workflows supporting collaborative science

Shiyong Lu, Jia Zhang
2011 International Journal of Business Process Integration and Management  
The convergence of the above two trends naturally leads to the concept of collaborative scientific workflows.  ...  Collaboration has become a dominant feature of modern science. Many scientific problems are beyond the realm of individual discipline or scientist to solve and hence require collaborative efforts.  ...  In summary, the lack of collaboration support and interoperability among SWFMSs has largely limited the potential of using scientific workflows to enable and accelerate scientific discovery and to solve  ... 
doi:10.1504/ijbpim.2011.040209 fatcat:5op5on2xgffhjabh7wgjrfuhai

Efficiently supporting secure and reliable collaboration in scientific workflows

Jiangang Ma, Jinli Cao, Yanchun Zhang
2010 Journal of computer and system sciences (Print)  
We also present a case study in a scientific research scenario to show the effectiveness of our approaches.  ...  The proposed approaches combine control flows and data flow models to describe scientific workflows, and extend the atomicity sphere concept by considering two levels of atomicity abstraction at the level  ...  Evaluation In this section, we exemplify the usage of the approach presented in this paper for supporting reliable collaboration.  ... 
doi:10.1016/j.jcss.2009.11.008 fatcat:vjjpdlqrpnbhxdz5no5wcghode

Collaborative Scientific Workflows

Shiyong Lu, Jia Zhang
2009 2009 IEEE International Conference on Web Services  
As more scientific research projects become collaborative in nature, there is a compelling need of dedicated services to support collaborative scientific workflows on the Internet.  ...  This paper reviews the state of the art of the field of scientific workflows towards the support of collaborative scientific workflows, identifies critical research challenges, and presents our ongoing  ...  , and effective modeling and management of interaction, coordination, collaboration among workflows, tasks, datasets, organizations, groups, and individuals.  ... 
doi:10.1109/icws.2009.150 dblp:conf/icws/LuZ09 fatcat:uixs7xfwond7ncnairul5yheje

End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach

Sheeba Samuel, Birgitta König-Ries
2022 Journal of Biomedical Semantics  
We have applied and evaluated our approach to a set of scientific experiments in different subject domains like computational science, biological imaging, and microscopy.  ...  Results We present the "REPRODUCE-ME" data model and ontology to describe the end-to-end provenance of scientific experiments by extending existing standards in the semantic web.  ...  Acknowledgements We thank Christoph Biskup, Kathrin Groeneveld and Tom Kache from University Hospital Jena, Germany, for providing the requirements to develop the proposed approach and evaluating the system  ... 
doi:10.1186/s13326-021-00253-1 pmid:34991705 pmcid:PMC8734275 fatcat:lwc57qbra5bcxiadcrimbufezi

Towards a Workflow Management Approach for Health Monitoring of Bridges [chapter]

Cesar Garita, Giannina Ortiz
2014 IFIP Advances in Information and Communication Technology  
This paper introduces a scientific workflow management approach to model and execute strategic SHM queries that require proper integration of data generated by different software components.  ...  In brief, Structural Health Monitoring (SHM) refers to the storage and analysis of large amounts of sensor data associated to specific variables that indicate the condition of a civil structure, e.g. a  ...  The authors of this paper wish to acknowledge the valuable contributions from all colleagues and partners of the e-Bridge 2.0 project.  ... 
doi:10.1007/978-3-662-44745-1_49 fatcat:57giknd35bbcpnagtzirp2q55q

Understanding the Practice of Discovery in Enterprise Big Data Science: An Agent-based Approach

Obinna Anya, Bob Moore, Cheryl Kieliszewski, Paul Maglio, Laura Anderson
2015 Procedia Manufacturing  
Using a simulation system based onthe practice-based approach to work study, the concept of bounded rationality,and the Gaia methodology for simulating organizations, we model big data science as an activity  ...  In this era of big data science, with heavy reliance on crowd-sourced data, open innovation, and collaborative analytics, the effect of the social and material realms on the process and practice of discovery  ...  Like these authors, we are interested in modeling the effect of organizational policies on a scientific process.  ... 
doi:10.1016/j.promfg.2015.07.345 fatcat:ywzlpv7upveuxjhctcyehnhhli

Putting "Human Crowds" in the Loop of Bibliography Evaluation: A Collaborative Working Environment for CSCW Publications

António Correia, Jorge Santos, Diogo Azevedo, Hugo Paredes, Benjamim Fonseca
2013 Procedia Technology - Elsevier  
This paper reports on a work in progress semantic analytics focused on what scientific research da of intellectual labor among social, computer, and citizen to traditional bibliometric approaches, attempting  ...  The current impact of financial crisis on societal and scien volumes of data in a socially-mediated interaction contex scale.  ...  Acknowledgements This work is funded (or part-funded) by the ERDF -European Regional Development Fund through the COMPETE Programme (operational programme for competitiveness) and by National Funds through  ... 
doi:10.1016/j.protcy.2013.12.064 fatcat:3eduoyuiejdczihyufwijvmqai

CI-Miner: semantically enhancing scientific processes

Paulo Pinheiro da Silva, Leonardo Salayandía, Aída Gándara, Ann Q. Gates
2009 Earth Science Informatics  
The discussion is grounded on lessons learned through the use of CI-Miner to semantically annotate scientific processes in the areas of geo-sciences,  ...  This article introduces the CI-Miner approach that can be used to aggregate knowledge about scientific processes and their products through the use of semantic annotations.  ...  Acknowledgements This work was supported in part by NSF grants HRD-0734825 and EAR-0225670.  ... 
doi:10.1007/s12145-009-0038-3 fatcat:vbesziu2ebaw3l3qs5gyk6a7qm

Towards A Methodology and Framework for Workflow-Driven Team Science [article]

Ilkay Altintas, Shweta Purawat, Daniel Crawl, Alok Singh, Kyle Marcus
2019 arXiv   pre-print
However, data and computing advances continuously change the way scientific workflows get developed and executed, pushing the scientific activity to be more data-driven, heterogeneous and collaborative  ...  and scalable activities in the scientific process.  ...  The authors would also like to thank Workflows for Data Science (WorDS) Center of Excellence team members Mai Nguyen and Volkan Vural for their participation in the discussions leading to this paper.  ... 
arXiv:1903.01403v1 fatcat:ubbe6qk5kfb77erhetvp25jele

An agent-based model of interdisciplinary interactions in science [article]

Juste Raimbault
2020 arXiv   pre-print
This paper introduces a parcimonious agent-based model of interdisciplinary relationships in collective entreprises of knowledge discovery, to investigate the impact of scientist-level decisions and preferences  ...  Different structures for collaboration networks may also yield various outcomes in terms of global interdisciplinarity.  ...  [Shafiee and Berglund, 2019] use an agent-based model to simulate the impact of a workflow to process data under different collaboration scenarios.  ... 
arXiv:2006.16399v1 fatcat:5qb4o64sn5avfdi4pqatj6ieyq

Confucius: A Tool Supporting Collaborative Scientific Workflow Composition

Jia Zhang, Daniel Kuc, Shiyong Lu
2014 IEEE Transactions on Services Computing  
The collaboration protocols are then applied to support effective concurrency control in the process of collaborative workflow composition.  ...  However, such workflows may have to be designed and revised among multiple scientists over a long time period.  ...  ACKNOWLEDGMENT The authors thank Sha Liu for the assistance in the presented experimental study. This work is supported by National Science Foundation, under grants NSF IIS-0959215 and IIS-0960014.  ... 
doi:10.1109/tsc.2012.13 fatcat:s6sg3zpmpfau7k6jbbmvq7oat4

Cloud Data Management for Scientific Workflows: Research Issues, Methodologies, and State-of-the-Art

Dong Yuan, Lizhen Cui, Xiao Liu
2014 2014 10th International Conference on Semantics, Knowledge and Grids  
As all the data are managed in the cloud, it is easy to share data among scientists. This kind of model is very convenient for users, but remains a big challenge to the system.  ...  Scientists can upload their data and launch their applications on the scientific cloud workflow systems from everywhere in the world via the Internet, and they only need to pay for the resources that they  ...  Acknowledgement The research work reported in this paper is partly supported by National Natural  ... 
doi:10.1109/skg.2014.37 dblp:conf/skg/YuanCL14 fatcat:suphvnfsujgc3ps2tbvsj6zaya

Achieving Team-Awareness in Scientific Grid Environments

Christoph Dorn, Daniel Schall, Schahram Dustdar
2008 2008 Seventh International Conference on Grid and Cooperative Computing  
The vision of the Scientific Web is to enable research scientists to collaborate in a ubiquitous manner; sharing resources, data, and insights how to perform experiments.  ...  In this paper we introduce an approach to enhance current grid infrastructures with awareness of team interactions.  ...  Acknowledgment Part of this work was supported by EU FP6 project in-Context (034718).  ... 
doi:10.1109/gcc.2008.13 dblp:conf/gcc/DornSD08 fatcat:v4hicjtgbrhczewtaxwahzedjq

Semantic support for computational land-use modelling

E. Pignotti, P. Edwards, A. Preece, G. Polhill, N. Gotts
2005 CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.  
In this paper we explore the use of proposed Semantic Grid standards and methodology through deployment of a land use modelling service.  ...  We also discuss ontology support for simulation parameters, hypotheses and results that will facilitate sharing and re-use of such resources among land-use scientists.  ...  In our opinion the FEARLUS-G argument structure approach is likely to be more intuitive to user scientists, reflecting as it does the evidence-based approach widely used within the scientific community  ... 
doi:10.1109/ccgrid.2005.1558649 dblp:conf/ccgrid/PignottiEPPG05 fatcat:zg46466ikfbcljyceyrcngvbua

Formalizing an Integrative, Multidisciplinary Cancer Therapy Discovery Workflow

M. F. McGuire, H. Enderling, D. I. Wallace, J. Batra, M. Jordan, S. Kumar, J. C. Panetta, E. Pasquier
2013 Cancer Research  
The developed template outlines an interdisciplinary collaboration workflow designed to systematically investigate the mechanistic underpinnings of a new therapy and validate that therapy to advance development  ...  Although many clinicians and researchers work to understand cancer, there has been limited success to effectively combine forces and collaborate over time, distance, data, and budget constraints.  ...  The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C.  ... 
doi:10.1158/0008-5472.can-13-0310 pmid:23955390 pmcid:PMC4040396 fatcat:sl6ldp4aojh6vjzuvp2ptsau4e
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