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Advancing translational research with the Semantic Web

Alan Ruttenberg, Tim Clark, William Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano (+11 others)
2007 BMC Bioinformatics  
Results: We present a scenario that shows the value of the information environment the Semantic Web can support for aiding neuroscience researchers.  ...  National Institute of Health (NIH) "Roadmap" is to strengthen Translational Research, defined as the movement of discoveries in basic research to application at the clinical level.  ...  We would like to thank Alzheimer Research Forum and Brainstage Research, Inc for contributing to part of the publication costs.  ... 
doi:10.1186/1471-2105-8-s3-s2 pmid:17493285 pmcid:PMC1892099 fatcat:sbsqc4hplba77fvazmrkeam2iy

Advanced Information Retrieval

Fuji Ren, David B. Bracewell
2009 Electronical Notes in Theoretical Computer Science  
In this paper we explore some of the most important areas of advanced information retrieval.  ...  Semantic based information retrieval goes beyond classical information retrieval and uses semantic information to understand the documents and queries in order to aid retrieval.  ...  Yu et al. looked at bringing the power of the semantic web to personal information retrieval using web services [73] . One of the main problems with the semantic web is the need for annotation.  ... 
doi:10.1016/j.entcs.2008.12.082 fatcat:77tbcdwnqfdylkmb2inrbpdjda

Word Sense Disambiguation Using Semantic Web for Tamil to English Statistical Machine Translation

Santosh Kumar T.S.
2016 IRA-International Journal of Technology & Engineering (ISSN 2455-4480)  
However, great strides have been made in this field with more success owing to the development of technologies of the web and off late there is a renewed interest in this area of research.  ...  Web technology web3.0 uses the semantic web technology which represents any object or resource in the web both syntactically and semantically.  ...  innovative possibilities that the Semantic Web provides for MT research.  ... 
doi:10.21013/jte.v5.n2.p1 fatcat:ludgfknwlfey5oidqe2bjhwdaq

Semantic Web Engineering: Boon or Bane

Kartik Goel, Ria Rawal
2020 Asian journal of convergence in technology  
All the advantages and disadvantages related with semantics are collected and explicitly listed out clearly in this paper after a lot of research.  ...  Through this paper, we propose to find if semantic web engineering is a boon or a bane in the field of technology.  ...  The quality of the existing structure of Semantic Web can be enhanced by working more and advancing the technology in a three-dimensional aspect.  ... 
doi:10.33130/ajct.2020v06i01.007 fatcat:nofih6edmjaehakcxwdg5bdzeu

The Promise of Systems Biology in Clinical Applications

Y. L. Yip
2008 IMIA Yearbook of Medical Informatics  
Progress in this area is aided by the ongoing development in data integration and management, whose current focus is on better semantics for facilitating translational research.  ...  Conclusions The best paper selection of articles on bioinformatics gives examples of original research that exploits mathematical modeling to tackle medical problems and of improved semantic solutions  ...  Acknowledgement I would like to acknowledge the support of Martina Hutter and the reviewers in the selection process of the IMIA Yearbook.  ... 
doi:10.1055/s-0038-1638589 fatcat:ji2i4tri5farvjereakitbpwyq

Introduction to semantic e-Science in biomedicine

Huajun Chen, Yimin Wang, Zhaohui Wu
2007 BMC Bioinformatics  
The Semantic Web technologies provide enhanced capabilities that allow data and the meaning of the data to be shared and reused across application, enterprise, and community boundaries, better enabling  ...  This special issue is intended to give an introduction of the state-of-the-art of Semantic Web technologies and describe how such technologies would be used to build the e-Science infrastructure for biomedical  ...  the publication process.  ... 
doi:10.1186/1471-2105-8-s3-s1 fatcat:ajgvbuqndjb55hk7uw3bqq6jda

Accelerating Knowledge Discovery through Community Data Sharing and Integration

Y.L. Yip
2009 IMIA Yearbook of Medical Informatics  
Enabling technologies, either Semantic Web or other solutions, are expected to play an increasingly important role in generating new knowledge in the foreseeable future.  ...  Results The selection process for this yearbook's section on Bioinformatics results in six excellent articles highlighting several important trends First, it can be noted that Semantic Web technology continues  ...  Acknowledgement I would like to acknowledge the support of Martina Hutter and the reviewers in the selection process of the IMIA Yearbook.  ... 
doi:10.1055/s-0038-1638650 fatcat:dmird6o2g5buldu7pnhbfirvoi

The semantic web in translational medicine: current applications and future directions

C. M. Machado, D. Rebholz-Schuhmann, A. T. Freitas, F. M. Couto
2013 Briefings in Bioinformatics  
In this survey, we present the results of our analysis of translational medicine solutions that follow a semantic web approach.  ...  Translational medicine is such a domain, which in addition has to integrate private data from the clinical domain with proprietary data from the pharmaceutical domain.  ...  Acknowledgements The authors would like to thank Miguel Gabriel for drawing the clinical practice illustration in Figure 1 , Doctor Daniel Faria for his assistance in revising the final manuscript and  ... 
doi:10.1093/bib/bbt079 pmid:24197933 pmcid:PMC4293377 fatcat:pjvgleeqnnc5hdnohuyw4kk2jq

From Ontology Selection and Semantic Web to an Integrated Information System for Food-borne Diseases and Food Safety [chapter]

Xianghe Yan, Yun Peng, Jianghong Meng, Juliana Ruzante, Pina M. Fratamico, Lihan Huang, Vijay Juneja, David S. Needleman
2011 Advances in Experimental Medicine and Biology  
food industry, and government agencies; and d) development of a computational model in semantic web for greater adaptability and robustness.  ...  pathogens, and knowledge gaps among research communities, government risk assessors/managers, and end users of the information.  ...  A deductive query language based on the semantic web ontology, OWL-QL, or other advanced technologies could facilitate user queries.  ... 
doi:10.1007/978-1-4419-7046-6_76 pmid:21431616 fatcat:4ujwh2c4ljd53gmyhznlwuoeju

Adapting BPEL4WS for the Semantic Web: The Bottom-Up Approach to Web Service Interoperation [chapter]

Daniel J. Mandell, Sheila A. McIlraith
2003 Lecture Notes in Computer Science  
Building on BPEL4WS, we present integrated Semantic Web technology for automating customized, dynamic binding of Web services together with interoperation through semantic translation.  ...  Researchers in the Semantic Web community have taken up this challenge proposing top-down approaches to achieve aspects of Web Service interoperation.  ...  We gratefully acknowledge the financial support of the US Defense Advanced Research Projects Agency DARPA Agent Markup Language (DAML) research grant #F30602-00-2-0579-P00001 and CALO research grant #NBCHD030010  ... 
doi:10.1007/978-3-540-39718-2_15 fatcat:jxzygqrmtff3lmtiswaitbgssa

The Use of Ontology in Retrieval: A Study on Textual, Multilingual and Multimedia Retrieval

Muhammad Nabeel Asim, Muhammad Wasim, Muhammad Usman Ghani Khan, Nasir Mahmood, Waqar Mahmood
2019 IEEE Access  
Ontologies are not only being extensively employed in the semantic Web to store unstructured information in an organized and structured way but it has also raised the performance of diverse information  ...  A substantial amount of data on the Web is available in an unstructured format, such as Web pages, books, journals, and files.  ...  All in all, we are optimistic to see more advanced research in the domain of cross lingual information retrieval that exploits world wide web, ontologies, and modern machine translation algorithms more  ... 
doi:10.1109/access.2019.2897849 fatcat:ei2zxyxdjndbvgzzue2indwqy4

Health information professionals and the Semantic Web: a symbiotic relationship?

Allison McArthur
2014 Journal of the Canadian Health Libraries Association  
In turn, semantic technologies developed with the input of experienced health information professionals have the potential to transform the practice of these professionals, particularly within the five  ...  Web concepts that relate to the practice of information professionals and the use of Semantic Web technologies in a health care context.  ...  In a Semantic Web environment, researchers may be further encouraged to share their results with peers before they are formally published.  ... 
doi:10.5596/c09-027 fatcat:qxwykgsxbng4ljtvovfan4hwyu

Video2Sentence and vice versa

Amirhossein Habibian, Cees G.M. Snoek
2013 Proceedings of the 21st ACM international conference on Multimedia - MM '13  
We will demonstrate the translations using arbitrary web videos and sentences related to everyday events.  ...  The key novelty is our machine translation capability that exploits a cross-media representation for both the visual and textual modality using concept vocabularies.  ...  ACKNOWLEDGMENTS This research is supported by the Intelligence Advanced Research Projects Activity (IARPA) via Department of Interior National Business Center contract number D11PC20067. The U.S.  ... 
doi:10.1145/2502081.2502249 dblp:conf/mm/HabibianS13 fatcat:orvp3zy4lbhubkp6hsg5zaloye

A knowledge federation architecture for rare disease patient registries and biobanks

Pedro Sernadela, Pedro Lopes, José Luís Oliveira
2016 Journal of Information Systems Engineering & Management  
To tackle these challenges, we introduce a semantic web-based architecture to connect distributed and heterogeneous registries and samples.  ...  Likeness, biobanks are currently an essential instrument for biomedical research, since they provide the very first piece of the biomedical research cycle, i.e. the biological samples.  ...  ACKNOWLEDGEMENTS The research leading to these results has received funding from the European Community's Seventh  ... 
doi:10.20897/lectito.201615 fatcat:ufbfgivervge3jsvephdus4ewu

Deep answers for naturally asked questions on the web of data

Mohamed Yahya, Klaus Berberich, Shady Elbassuoni, Maya Ramanath, Volker Tresp, Gerhard Weikum
2012 Proceedings of the 21st international conference companion on World Wide Web - WWW '12 Companion  
We demonstrate the capabilities and interface of DEANNA, which allows advanced users to influence the translation process and to see how the different components interact to produce the final result.  ...  We leverage the semantic type system for entities and use constraints in jointly mapping the constituents of the question to relations, classes, and entities.  ...  Dbpedia forms the nucleus of the Web of Linked Data [4] , which interconnects hundreds of RDF data sources with a total of 30 billion subject-property-object (SPO) triples.  ... 
doi:10.1145/2187980.2188070 dblp:conf/www/YahyaBERTW12 fatcat:7l2ffkxvmzdkdoexmeywp6qxoq
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