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Localising the Clinical Terminology SNOMED CT by Semi-automated Creation of a German Interface Vocabulary

Stefan Schulz, Larissa Hammer, David Hashemian Nik, Markus Kreuzthaler
2020 International Conference on Language Resources and Evaluation  
The core resource is a manually maintained table of English-to-German word and chunk translations, supported by a set of language generation rules.  ...  Interestingly, annotations are slightly better with machine-translated (German -English) texts, using the International SNOMED CT resource only.  ...  Acknowledgements This work was partly supported by the EU projects SEMCARE -7th FP grant 611388; ASSESS-CT -H2020-PHC-2014-15, grant 643818.  ... 
dblp:conf/lrec/SchulzHNK20 fatcat:isngcaehwfcpjousog5enxlbv4

Quantitative analysis of manual annotation of clinical text samples

Jose A. Miñarro-Giménez, Ronald Cornet, M.C. Jaulent, Heike Dewenter, Sylvia Thun, Kirstine Rosenbeck Gøeg, Daniel Karlsson, Stefan Schulz
2019 International Journal of Medical Informatics  
Objective: This paper presents a quantitative analysis of the results obtained in ASSESS CT to determine the fitness of SNOMED CT for semantic interoperability.  ...  The much lower term coverage for the Swedish version of SNOMED CT compared to English together with the similarly high concept coverage obtained with English and Swedish SNOMED CT reflects its relevance  ...  Further investigations are needed to assess the use of interface terminologies for the support of SNOMED CT implementations in practice.  ... 
doi:10.1016/j.ijmedinf.2018.12.011 fatcat:24wfvvsxinemrjzt26sfcvwalq

Qualitative analysis of manual annotations of clinical text with SNOMED CT

Jose Antonio Miñarro-Giménez, Catalina Martínez-Costa, Daniel Karlsson, Stefan Schulz, Kirstine Rosenbeck Gøeg, Christian Lovis
2018 PLoS ONE  
SNOMED CT provides about 300,000 codes with fine-grained concept definitions to support interoperability of health data.  ...  We conducted a qualitative analysis to identify sources of disagreements on an annotation experiment which used a subset of SNOMED CT with some restrictions.  ...  Acknowledgments We acknowledge all ASSESS CT team for their contribution to this work and, in particular, to Kornél Markó, Benny Van Bruwaene, Ronald Cornet, Marie-Christine Jaulent, Päivi Hämäläinen,  ... 
doi:10.1371/journal.pone.0209547 pmid:30589855 pmcid:PMC6307753 fatcat:foysbfqmezbsjb5n3u3tgxxv74

Enriching the international clinical nomenclature with Chinese daily used synonyms and concept recognition in physician notes

Rui Zhang, Jialin Liu, Yong Huang, Miye Wang, Qingke Shi, Jun Chen, Zhi Zeng
2017 BMC Medical Informatics and Decision Making  
as SNOMED CT.  ...  The system focuses on the SNOMED CT with Chinese synonyms enrichment (SCCSE). The literal similarity and the diagnosis-related similarity metrics were used for concept mapping.  ...  Availability of data and materials The data and materials in this study will not be reposited for public use.  ... 
doi:10.1186/s12911-017-0455-z pmid:28464923 pmcid:PMC5414139 fatcat:hs7zj572dravzmv5kl3wpi3s6e

MHeTRep: A multilingual semantically tagged health terms repository

Jorge Vivaldi, Horacio Rodríguez
2022 Natural Language Engineering  
All the terms in the collection are semantically tagged with a tagset corresponding to the top categories of Snomed-CT ontology.  ...  This is particularly important in medicine, a domain living moments of great expansion. The proposed method takes Snomed-CT as starting point.  ...  Furthermore, the authors are grateful for any suggestions and advice received from the anonymous reviewers. Your collaboration has allowed us to improve this paper.  ... 
doi:10.1017/s1351324922000055 fatcat:bzfh6d5gnbdyhexkx33wpfqsba

A Model for Evaluating Interface Terminologies

S. T. Rosenbloom, R. A. Miller, K. B. Johnson, P. L. Elkin, S. H. Brown
2008 JAMIA Journal of the American Medical Informatics Association  
Measurements: Parameters include concept accuracy, term expressivity, degree of semantic consistency for term construction and selection, adequacy of assertional knowledge supporting concepts, degree of  ...  The authors present a model for evaluating functional utility of interface terminologies based on these intended uses.  ...  In this case, the SNOMED CT concept "blood in urine" more accurately represents the dictated term, but has a different semantic character; by contrast, the SNOMED CT concept hematuria has the same semantic  ... 
doi:10.1197/jamia.m2506 pmid:17947616 pmcid:PMC2274877 fatcat:fxihp3kexzembo54updavahwkq

Developing Ontologies of Medical Guidelines for Automated Conversation Summarization

Omar ElAssy, Fabiano Dalpiaz, Sjaak Brinkkemper
2022 Zenodo  
"Developing Ontologies of Medical Guidelines for Automated Conversation Summarization" is a technical report regarding the use of ontologies in the construction of part of the Care2Report system.  ...  of the SNOMED CT.  ...  SNOMED CT Design An overview of the design of SNOMED CT (figure 4 ) guides the user's understanding of its components ("SNOMED CT Basics", n.d.).  ... 
doi:10.5281/zenodo.6469617 fatcat:5v2lvva4unhchd36zwj6rgu5hu

Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes

Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, Maria Jesus Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, Peter-John M. Noble, Phil H. Jones, Jo Dukes-McEwan (+3 others)
2019 Journal of Biomedical Semantics  
Deep Learning opens up opportunities for routinely scanning large bodies of biomedical literature and clinical narratives to represent the meaning of biomedical and clinical terms.  ...  Each concept, represented by an n-gram, is mapped to UMLS using MetaMap; we also developed a bespoke method for mapping short forms (e.g. abbreviations and acronyms).  ...  SNOMED CT®, was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.  ... 
doi:10.1186/s13326-019-0212-6 pmid:31711540 pmcid:PMC6849172 fatcat:vfm3gd524ng3xprcra2z356lha

The Building Blocks of Information Are Selections – Let's Define Them Globally! [chapter]

Wolfgang Orthuber
2021 Studies in Health Technology and Informatics  
Thus, the format of the number sequence and its meaning is defined online. This opens up far-reaching new possibilities for the efficient exchange, comparison and search of information.  ...  It can form the basis for a new global framework that improves the reproducibility, search, and exchange of data across systems, borders, and languages.  ...  For example, adapted domains can be defined for diagnoses from ICD-10 [10] or SNOMED-CT [11] as well as for diagnostic devices and diagnostic procedures.  ... 
doi:10.3233/shti210576 pmid:34734854 fatcat:vsk5tpygxzh6pg5ihmax44vf3m

Building Large Collections of Chinese and English Medical Terms from Semi-Structured and Encyclopedia Websites

Yan Xu, Yining Wang, Jian-Tao Sun, Jianwen Zhang, Junichi Tsujii, Eric Chang, Tobias Preis
2013 PLoS ONE  
We use two test sets for Chinese. For English, we use a collection of terms in the 2010 i2b2 text. Two collections of terms, one for English and the other for Chinese, have been created.  ...  We developed two systems, one for Chinese and another for English terms. The two systems share the same methodology and use the same software with minimum language dependent parts.  ...  Since Chinese characters are ideograms and many Chinese translations of drug names are transliterations, we may have different Chinese translations for the same drug. For instance,``??  ... 
doi:10.1371/journal.pone.0067526 pmid:23874426 pmcid:PMC3706590 fatcat:i4wtr6d4kvclloxlna6sqjra7q

Interoperability of electronic health records using Semantic Knowledge Graphs. A use case applied at the UTPL University Hospital

Monica Calva, Nelson Piedra
2021 CLEI Electronic Journal  
Patient medical information is diverse, extensiveand of high value in supporting informed medical decision-making.This information is highly complex, is distributed among differentsystems, presents high  ...  The pilot of this proposal wasdeveloped at the UTPL Hospital.  ...  ACKNOWLEDGMENTS The authors wish to thanks to the Universidad Técnica Particular de Loja for its support through the UTPL Hospital.  ... 
doi:10.19153/cleiej.24.2.2 fatcat:rwba6orjv5g2vkla5rxw4egvoq

The Importance of Body Part Labeling to Enable Enterprise Imaging: A HIMSS-SIIM Enterprise Imaging Community Collaborative White Paper

Alexander J. Towbin, Christopher J. Roth, Cheryl A. Petersilge, Kimberley Garriott, Kenneth A. Buckwalter, David A. Clunie
2021 Journal of digital imaging  
access control policies, and can be used as an interim surrogate for more sophisticated rule-based or attribute-based access control mechanisms.  ...  Although additional work is needed to protect sensitive images, standard coded values in Anatomic Region Sequence support the identification of potentially sensitive images, enable facilities to create  ...  If a body part location does not exist in SNOMED CT, it is provided from the Foundational Model of Anatomy.  ... 
doi:10.1007/s10278-020-00415-0 pmid:33481143 fatcat:zghf5jbfxze27nfp7puwkwekly

Conceptual graph-based knowledge representation for supporting reasoning in African traditional medicine

Bernard Kamsu-Foguem, Gayo Diallo, Clovis Foguem
2013 Engineering applications of artificial intelligence  
The nested conceptual graphs are used to visually express the semantic meaning of Computational Tree Logic (CTL) constructs that are useful for formal specification of temporal properties of ATM domain  ...  Knowledge engineering methods for traditional medicine are useful to model suitably complex information needs, formalize knowledge of domain experts and highlight the effective practices for their integration  ...  The primary purpose of SNOMED CT is to support the effective clinical recording of data with the aim of improving patient care.  ... 
doi:10.1016/j.engappai.2012.12.004 fatcat:2xh33kigwbcnfh2injbb63cqwu

Problems in FAIRifying Medical Datasets

Matthias Löbe, Franz Matthies, Sebastian Stäubert, Frank A Meineke, Alfred Winter
2020 Studies in Health Technology and Informatics  
Based on practical experience in the operation of a data repository, this article addresses problems in FAIR provisioning of medical data for research purposes in the use case of the Leipzig Health Atlas  ...  Their generic design, however, leaves much room for interpretation in domain-specific application.  ...  Acknowledgements: This work was supported by the European Union (H2020/824666 -FAIR4Health), the German Ministry of Education and Research (LHA: 031L0026, SMITH: 01ZZ1803A) and the German Research Foundation  ... 
doi:10.3233/shti200189 pmid:32570413 fatcat:zn54jzcr2zevjmamjxlvqqovi4

Data Infrastructure for Medical Research

Thomas Heinis, Anastasia Ailamaki
2017 Foundations and Trends in Databases  
MRI), new sources of structured data like activity trackers, the wide-spread use of electronic health records and many others.  ...  References 95 Abstract While we are witnessing rapid growth in data across the sciences and in many applications, this growth is particularly remarkable in the medical domain, be it because of higher resolution  ...  Concepts are units that categorize all the things that characterize health care processes and need to be recorded. The latest SNOMED CT revision included 311'000 concepts.  ... 
doi:10.1561/1900000050 fatcat:fakmpm37lfcelokzvlx6tcld6m
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