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API design for machine learning software: experiences from the scikit-learn project [article]

Lars Buitinck, Gilles Louppe, Mathieu Blondel, Fabian Pedregosa, Andreas Mueller, Olivier Grisel, Vlad Niculae, Peter Prettenhofer, Alexandre Gramfort (INRIA Saclay - Ile de France, LTCI), Jaques Grobler, Robert Layton, Jake Vanderplas (+3 others)
<span title="2013-09-01">2013</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
In this paper, we present and discuss our design choices for the application programming interface (API) of the project.  ...  Scikit-learn is an increasingly popular machine learning li- brary. Written in Python, it is designed to be simple and efficient, accessible to non-experts, and reusable in various contexts.  ...  Past and present sponsors of the project also include Google for funding scholarships through its Summer of Code program, the Python Software Foundation and Tinyclues for funding coding sprints.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1309.0238v1">arXiv:1309.0238v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zsj2firttvb4zgbegpgagpt5py">fatcat:zsj2firttvb4zgbegpgagpt5py</a> </span>
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Designing and Evaluating the Usability of a Machine Learning API for Rapid Prototyping Music Technology

Francisco Bernardo, Michael Zbyszyński, Mick Grierson, Rebecca Fiebrink
<span title="2020-04-03">2020</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jfxjod42szdexo7gatfnybn2ca" style="color: black;">Frontiers in Artificial Intelligence</a> </i> &nbsp;
The results from questionnaire indicate that participants found the RAPID-MIX API a machine learning API which is easy to learn and use, fun, and good for rapid prototyping with interactive machine learning  ...  We present the design rationale for the RAPID-MIX API, an easy-to-use API for rapid prototyping with interactive machine learning, and a usability evaluation study with software developers of music technology  ...  We would like to thank Steven Clarke from Microsoft VS Code and Visual Studio usability group for providing details about his API usability studies with the Cognitive Dimensions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/frai.2020.00013">doi:10.3389/frai.2020.00013</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33733132">pmid:33733132</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7861239/">pmcid:PMC7861239</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dqxbadj6erc5xc72au4rau3aja">fatcat:dqxbadj6erc5xc72au4rau3aja</a> </span>
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Characterizing and Understanding Software Security Vulnerabilities in Machine Learning Libraries [article]

Nima Shiri Harzevili, Jiho Shin, Junjie Wang, Song Wang
<span title="2022-03-12">2022</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
DeepMut is designed to assess the adequacy of existing test suites of ML libraries against security-aware mutation operators extracted from the vulnerabilities studied in this work.  ...  The application of machine learning (ML) libraries has been tremendously increased in many domains, including autonomous driving systems, medical, and critical industries.  ...  Availability We make the dataset and source code of our experiments available at https://cse19922021.github.io/ Deep-Learning-Security-Vulnerabilities/.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2203.06502v1">arXiv:2203.06502v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5kdx4h44w5h4jmzvlp34l63ije">fatcat:5kdx4h44w5h4jmzvlp34l63ije</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220321021017/https://arxiv.org/pdf/2203.06502v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2e/bd/2ebd3a9ae4466d76a9314f0a1ebf25a723fdaef1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2203.06502v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

A Model-Driven Approach to Machine Learning and Software Modeling for the IoT [article]

Armin Moin, Moharram Challenger, Atta Badii, Stephan Günnemann
<span title="2021-11-23">2021</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
For instance, in Machine Learning (ML), which is currently the most popular sub-discipline of AI, mathematical models may learn useful patterns in the observed data and can become capable of making predictions  ...  SE models may specify the architecture at different levels of abstraction and for addressing different concerns at various stages of the software development life-cycle, from early conceptualization and  ...  Acknowledgements This work is partially funded by the German Federal Ministry for Education and Research (BMBF) through the Software Campus initiative (project ML-Quadrat).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2107.02689v3">arXiv:2107.02689v3</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vsbwfcbbs5bqrfyslhb7jlvxoy">fatcat:vsbwfcbbs5bqrfyslhb7jlvxoy</a> </span>
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A Review of Open Source Software Tools for Time Series Analysis [article]

Yunus Parvej Faniband
<span title="2022-03-10">2022</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Machine Learning (ML) approaches , on the other hand , have seen an increase in the state of the art for Forecasting and Anomaly Detection because they provide comparable results when time and data constraints  ...  Nonetheless , open source machine learning capabilities for time series remain limited , and existing libraries are frequently incompatible with one another.  ...  Massive Online Analysis (MOA) Bifet et al. [2010] is yet another Java-based software environment for developing algorithms and running experiments for online learning from changing data streams.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2203.05195v1">arXiv:2203.05195v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rhei4cyrpfhlzibbdfpnyn5bw4">fatcat:rhei4cyrpfhlzibbdfpnyn5bw4</a> </span>
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Turning Software Engineers into AI Engineers [article]

Petra Heck, Gerard Schouten
<span title="2021-01-04">2021</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
After three years of experience, we present our lessons learned for both educational institutions and software engineers in practice.  ...  In industry as well as education as well as academics we see a growing need for knowledge on how to apply machine learning in software applications.  ...  Special thanks go to Luís Cruz from the Delft University of Technology for his valuable feedback on our paper and his help in exploring the field of AI engineering.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2011.01590v2">arXiv:2011.01590v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5cgmxzacfvh2pcyg2geq4foxoq">fatcat:5cgmxzacfvh2pcyg2geq4foxoq</a> </span>
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Descriptions of issues and comments for predicting issue success in software projects

Sandra L. Ramírez-Mora, Hanna Oktaba, Helena Gómez-Adorno
<span title="">2020</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kqzhqyka2ffqdlbon77fd6trwm" style="color: black;">Journal of Systems and Software</a> </i> &nbsp;
Seven machine learning classifiers were trained on 30k issues and more than 120k comments, and more than 6000 experiments were performed to predict the success of three types of issues: bugs, improvements  ...  Other communication aspects and their relationship to the success of software projects must be researched in detail using data from software tools.  ...  In the work of Choetkiertikul et al. (2018), an approach was proposed for predicting delivery capacity for software development iterations applying machine learning techniques and using data from  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jss.2020.110663">doi:10.1016/j.jss.2020.110663</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zovzss64wzawhm4srw34s5gamy">fatcat:zovzss64wzawhm4srw34s5gamy</a> </span>
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mlr3: A modern object-oriented machine learning framework in R

Michel Lang, Martin Binder, Jakob Richter, Patrick Schratz, Florian Pfisterer, Stefan Coors, Quay Au, Giuseppe Casalicchio, Lars Kotthoff, Bernd Bischl
<span title="2019-12-11">2019</span> <i title="The Open Journal"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3gk7mr6lhvdwnkgcicv7r2lrry" style="color: black;">Journal of Open Source Software</a> </i> &nbsp;
The most widely used ones are scikit-learn (Pedregosa et al., The predecessor package mlr was first released to CRAN in 2013, with the core design and architecture dating back much further.  ...  . mlr3 takes these lessons learned to heart and now follows these design principles: Lang et al., (2019). mlr3: A modern object-oriented machine learning framework in R.  ...  The authors of this work take full responsibilities for its content. This work was partly supported by Deutsche Forschungsgemeinschaft (DFG) within the Collaborative Research Center SFB 876, A3.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.01903">doi:10.21105/joss.01903</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4jsgu6kiczc3loxpfsc4xzb7hy">fatcat:4jsgu6kiczc3loxpfsc4xzb7hy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191214064539/https://www.theoj.org/joss-papers/joss.01903/10.21105.joss.01903.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/79/6a/796aa29837824d307ef43270f8f7f91bb20812ec.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.01903"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

pyrolite: Python for geochemistry

Morgan Williams, Louise Schoneveld, Yajing Mao, Jens Klump, Justin Gosses, Hayden Dalton, Adam Bath, Steve Barnes
<span title="2020-06-09">2020</span> <i title="The Open Journal"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3gk7mr6lhvdwnkgcicv7r2lrry" style="color: black;">Journal of Open Source Software</a> </i> &nbsp;
Acknowledgements The authors of this publication (listed in reverse alphabetical order) have all contributed to the development of pyrolite at an early stage.  ...  In addition, these tools provide a foundation for preparing data for subsequent machine learning applications using scikit-learn (Pedregosa et al., 2011) .  ...  Together with the methods for compositional data and utilities for dimensional reduction via scikit-learn, pyrolite eases some of these difficulties and encourages users to make the most of their data  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.02314">doi:10.21105/joss.02314</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/sfo2zg4dznf4xj2jmusb3357py">fatcat:sfo2zg4dznf4xj2jmusb3357py</a> </span>
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Investigating type declaration mismatches in Python

Luca Pascarella, Achyudh Ram, Azqa Nadeem, Dinesh Bisesser, Norman Knyazev, Alberto Bacchelli
<span title="">2018</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/qjdq73uwobgdxnahtgyqdrsouu" style="color: black;">2018 IEEE Workshop on Machine Learning Techniques for Software Quality Evaluation (MaLTeSQuE)</a> </i> &nbsp;
With our study, we investigate how often the documentation is inconsistent in a sample of 239 methods from five Python open-source software projects.  ...  With our study, we investigate how often the documentation is inconsistent in a sample of 239 methods from five Python opensource software projects.  ...  With this process, we selected five heterogeneous software systems: SCIKIT-LEARN, SCIKIT-IMAGE, MATPLOTLIB, NETWORKX, and NEUPY.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/maltesque.2018.8368458">doi:10.1109/maltesque.2018.8368458</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/wcre/PascarellaRNBKB18.html">dblp:conf/wcre/PascarellaRNBKB18</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/llykgmqzazaxxcyep5rdp7g6i4">fatcat:llykgmqzazaxxcyep5rdp7g6i4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200219104542/https://www.zora.uzh.ch/id/eprint/152986/1/msr_main.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a2/dc/a2dcad40f21b565f85a8ea076c56a261dccf4c5a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/maltesque.2018.8368458"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Fireworks: Reproducible Machine Learning and Preprocessing with PyTorch

Saad Khan, Libusha Kelly
<span title="2019-07-21">2019</span> <i title="The Open Journal"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3gk7mr6lhvdwnkgcicv7r2lrry" style="color: black;">Journal of Open Source Software</a> </i> &nbsp;
Here, we present a batch-processing library for constructing machine learning pipelines using PyTorch and dataframes.  ...  It is meant to provide an easy method to stream data from a dataset into a machine learning model while performing reprocessing steps such as randomization, train/test split, batch normalization, etc.  ...  This library is designed to be easy to incorporate into a project without requiring one to change the other aspects of their workflow in order to help researchers implement cleaner machine learning pipelines  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.01478">doi:10.21105/joss.01478</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ecur6mydlbgsndl27ytfzqywhy">fatcat:ecur6mydlbgsndl27ytfzqywhy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200208083952/https://joss.theoj.org/papers/10.21105/joss.01478.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/01/b9/01b95f213c92d87372064f9a7d0f7584a3e96de2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.01478"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Model-Driven Software Engineering of Machine Learning-Enabled Cyber-Physical Systems & IoT Services

Anonymous
<span title="2021-09-03">2021</span> <i title="Zenodo"> Zenodo </i> &nbsp;
However, CPS applications and IoT services are becoming increasingly data-driven and smart, using Artificial Intelligence (AI), in particular Machine Learning (ML).  ...  The provided model-to-code transformations (i.e., code generators) produce the full source code of the target IoT services out of the software model instances in an automated manner.  ...  1, as well as for Python, specifically the APIs of the DAML libraries and frameworks, Scikit-Learn [27] and Keras [?  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.5426129">doi:10.5281/zenodo.5426129</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3g6alv5u5zgvvizyn4kjwkzpda">fatcat:3g6alv5u5zgvvizyn4kjwkzpda</a> </span>
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Learning-based Orchestrator for Intelligent Software-defined Networking Controllers

Imene Elloumi Zitouna
<span title="2020-12-08">2020</span> <i title="Zenodo"> Zenodo </i> &nbsp;
This paper presents an overview of our learning-based orchestrator for intelligent Open vSwitch that we present this using Machine Learning in Software-Defined Networking technology.  ...  The first task consists of extracting relevant information from the Data flow generated from a SDN and using them to learn, to predict and to accurately identify the optimal destination OVS using Reinforcement  ...  In our design, the Q-Learning algorithm is utilized in our emulation experiments.  ... 
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causal-curve: A Python Causal Inference Package to Estimate Causal Dose-Response Curves

Roni Kobrosly
<span title="2020-08-31">2020</span> <i title="The Open Journal"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3gk7mr6lhvdwnkgcicv7r2lrry" style="color: black;">Journal of Open Source Software</a> </i> &nbsp;
Acknowledgements We acknowledge the valuable feedback from Miguel-Angel Luque, Erica Moodie, and Mark van der Laan during the creation of this project.  ...  API was designed to resemble that of scikit-learn, as this is a commonly used Python predictive modeling framework familiar to most machine learning practitioners. • All of the major classes contained  ...  TMLE involves predicting the outcome from the treatment and covariates using a machine learning model, then predicting treatment assignment from the covariates.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.02523">doi:10.21105/joss.02523</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/p7ij4pnxszagfn53z4sowq5ime">fatcat:p7ij4pnxszagfn53z4sowq5ime</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200901185234/https://joss.theoj.org/papers/10.21105/joss.02523.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/42/f4/42f46a52528bbeb6a80b2509a957429d84d49c08.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.02523"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

A Systematic Review of Open Source Clinical Software on GitHub for Improving Software Reuse in Smart Healthcare

Zhengru Shen, Marco Spruit
<span title="2019-01-03">2019</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/smrngspzhzce7dy6ofycrfxbim" style="color: black;">Applied Sciences</a> </i> &nbsp;
However, the lack of research on open source clinical software poses a challenge for software reuse in clinical software development.  ...  The plethora of open source clinical software offers great reuse opportunities for developers to build clinical tools at lower cost and at a faster pace.  ...  , design, clinical decision support, medical informatics 7 Medical education Medical students, final project, medical center, project Gutenberg book, experiments, paperwork 8 Healthcare management  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/app9010150">doi:10.3390/app9010150</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dwt74hk2o5brtiyvoixfrv5cri">fatcat:dwt74hk2o5brtiyvoixfrv5cri</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502043215/https://res.mdpi.com/applsci/applsci-09-00150/article_deploy/applsci-09-00150-v3.pdf?filename=&amp;attachment=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4f/66/4f666284c03eb0df6e2116feed77a41ea62ef567.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/app9010150"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>
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