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A system for knowledge management in bioinformatics
2002
Proceedings of the eleventh international conference on Information and knowledge management - CIKM '02
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We address this problem in a comprehensive system for knowledge management in bioinformatics called e2e. ...
We have implemented an e2e prototype that enables a biologist to analyze her gene expression data in GEML or from a public site like Stanford, and discover knowledge through operations like querying on ...
To the stated end, we describe a comprehensive system for knowledge management in bioinformatics called e2e (see Figure 1 ) in which data generated by the biochip experiments can be cross-referenced and ...
doi:10.1145/584792.584905
dblp:conf/cikm/AdakBBKKKS02
fatcat:ueh36lhoeng6zpsvzqbayn56sq
Collaborative Integration of Bioinformatics Knowledge Management System and Mobile Wireless Devices
2018
Transactions on Machine Learning and Artificial Intelligence
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Knowledge Management System (KMS) currently becomes a common medium to distribute knowledge by using the Information Technology (IT) as enabler tools for everyone to reach, share with among the members ...
Knowledge Management (KM) has been a buzzword in a range of subject disciplines for many years, and has latterly been applied to higher learning institution. ...
Conclusion As a conclusion, it seems that Bioinformatics Knowledge Management System could be implemented in the bioinformatics institution with the base of knowledge management framework that has been ...
doi:10.14738/tmlai.72.6203
fatcat:y6g7vijivrgw5gjrpaun752eau
Evolving from Bioinformatics in-the-Small to Bioinformatics in-the-Large
2003
Omics
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for developing bioinformatics database systems. ...
The popular make utility is a very effective system for defining and maintaining simple dependencies, and it offers a number of insights about the essence of bioinformatics in-the-large. ...
good sketch of a system for managing knowledge maps. ...
doi:10.1089/153623103322006580
pmid:12831555
fatcat:fkek5r75fnh3hhweboa4557rn4
Technical Perspectives on Knowledge Management in Bioinformatics Workflow Systems
2015
International Journal of Advanced Computer Science and Applications
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This article focuses on the knowledge management of in silico experimentation in bioinformatics workflow systems. ...
Thus the management of knowledge is therefore an important issue for life scientists. ...
Section III, discussed knowledge management efforts in Bioinformatics workflow systems and presents the knowledge management life cycle in bioinformatics workflow systems. ...
doi:10.14569/ijacsa.2015.060126
fatcat:wskynuwvzvfijb4cymmpu4to4e
Using provenance to manage knowledge of In Silico experiments
2007
Briefings in Bioinformatics
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This article offers a briefing in one of the knowledge management issues of in silico experimentation in bioinformatics. ...
In Silico experimental protocols should themselves be a form of managing the knowledge of how to perform bioinformatics analyses. ...
J.Z's work is supported by a studentship from the UK e-Science programme EPSRC grant GR/R67743. ...
doi:10.1093/bib/bbm015
pmid:17502335
fatcat:folt4biql5db7c5plbppukrrli
A Notification System Model for Bioinformatics Community of Practice
2010
Computer and Information Science
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Whilst the knowledge management system (KMS) provides a sturdy basic for the Bioinformatics portal as a whole, the agent technology support the operation of the notification system. ...
The objective of this project is to build a notification system for Bioinformatics community of practice (CoP). ...
It can be defined as knowledge of biological data from computer analysis and obviously it needs a proper system that can manage the massive knowledge. ...
doi:10.5539/cis.v3n2p191
fatcat:fux57qcep5ax5jaztmi5ydccgy
Towards Clinical Bioinformatics: Advancing Genomic Medicine with Informatics Methods and Tools
2004
Methods of Information in Medicine
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Further review papers deal with public health implications of bioinformatics, knowledge management and trends in health care education. ...
Integrated data and knowledge resources are generally regarded to be central and key issues for clinical bioinformatics. ...
for knowledge management and decision support. ...
doi:10.1055/s-0038-1633872
pmid:15227561
fatcat:2lwoet3eizgpvkrx4hyjfmopze
Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches
[article]
2013
arXiv
pre-print
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When selecting the best of these tools, called here BKTMS (Bioinformatics Knowledge Transmission Management Systems), there may be confusion. What makes a good BKTMS? ...
This review and evaluation will be used to gain insight into the tools, systems, and capabilities that will be added to or excluded from a new proposed model for the next generation of BKTMS, involving ...
Doug Goodman and Jerry Prentice for their helpful corrections on this work. ...
arXiv:1310.8383v1
fatcat:swxgzxnavzanph7uiahzreqfx4
Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies
2014
PLoS Computational Biology
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Emrich, Murlidharan Nair, Shifra Ben-Dor, and Erich Baker for their contributions to the working group that surveyed existing bioinformatics curricula; and to Jenny Cham and Mary Todd Bergman for assistance ...
Acknowledgments The authors express appreciation to Murli Nair for helping to summarize career opportunities; to Erik Bongcam-Rudloff, Celia van Gelder, Antoine H. C. van Kampen, Scott J. ...
A persona for a representative ''bioinformatics engineer'' is provided in Figure 4 . ...
doi:10.1371/journal.pcbi.1003496
pmid:24603430
pmcid:PMC3945096
fatcat:2q7uagjbkvfqfkv2bc2wyerbce
The role of parallelism, web services and ontologies in bioinformatics and omics data management and analysis
2013
EMBnet journal
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This paper presents an overview of how parallelism, service orientation, and knowledge management techniques can be used to face those challenges presenting some recent bioinformatics tools and projects ...
that employ such technologies in different stages of the bioinformatics analysis's pipeline. ...
Knowledge management techniques and especially ontologies are more and more used to model pre-existing knowledge in medicine and biology. ...
doi:10.14806/ej.19.b.731
fatcat:i3tffcagufhd5ijk5cq5enzwxe
HEALTHCARE INFORMATION SYSTEMS: A PEDAGOGICAL ANALYSIS OF CURRENT DEGREE PROGRAMS
2010
Issues in Information Systems
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It is expected that universities planning to offer degree programs in healthcare information systems can use these themes as the fundamental basis for developing a structure of their own degree program ...
This research provides a pedagogical analysis of the current healthcare information systems degree programs from various U.S. universities and classifies the coursework offered in these universities into ...
Fundamental knowledge of bioinformatics is essential for courses in this theme, however programming skills and access to a database plays a key role. ...
doi:10.48009/2_iis_2010_176-183
fatcat:ukktg5s7dzgvzo6fz3vtqzvfbi
Trends in life science grid: from computing grid to knowledge grid
2006
BMC Bioinformatics
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work together, create knowledge, and share knowledge and experiences in a community. ...
Data grid technologies are strong candidates for realizing "resourceome" for bioinformatics. ...
Acknowledgements The authors express special thanks for the member of the Open Bioinformatics Grid project and anonymous reviewers for their valuable discussion and useful comments for this manuscript. ...
doi:10.1186/1471-2105-7-s5-s10
pmid:17254294
pmcid:PMC1764466
fatcat:tlemqfzeljfdbaxa6gw5mid7f4
Biomedical and Health Informatics Education and Research at the Information Technology Institute in Egypt
2011
IMIA Yearbook of Medical Informatics
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The ITI BMHI research projects tackle a wide-range of current chal- lenges in this field, such as knowledge management in healthcare, providing tele-consultation services for diagnosis and treatment of ...
SummaryDuring the last decade, Egypt has experienced a revolution in the field of Information and Communication Technology (ICT) that has had a corresponding impact on the field of healthcare.Since 1993 ...
However, the WHO reported that there was a strong need for orientation on both eHealth and eLearning technologies in addition to training in the development and management of eHealth systems [2] . ...
doi:10.1055/s-0038-1638756
fatcat:ixgfxx6khnczvh5h2avdmft2xm
Critical technologies for bioinformatics
2008
Briefings in Bioinformatics
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This system offers a formal description of objects, processes and relations necessary for conceptualization of knowledge in molecular immunogenetics and provides tools for multi-scale approaches at various ...
It offers a convenient means for managing data from local files and web repositories, for statistical analysis of data, and visualization of results. ...
doi:10.1093/bib/bbn025
pmid:18499720
fatcat:czsclzqf2raj7dzfuvqt2u7i4u
Platform for EpiGenomic Research (PEGR): A flexible management platform for reproducible epigenomic and genomic research
2021
Zenodo
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To our knowledge, there are no free open-source platforms that manage entire experimental pipelines, from wet-bench experiments to bioinformatic analyses. ...
Laboratory information management systems (LIMS) typically focus on inventory m [...] ...
We developed the Platform for Epigenomic and Genomic Research (PEGR), a web-based project management platform that integrates wet-bench sample tracking with downstream bioinformatic workflows (managed ...
doi:10.5281/zenodo.5570116
fatcat:owpo7qbgxnfb7bh4hlmid2bvdy
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