Filters








18,031 Hits in 4.8 sec

A promoter-level mammalian expression atlas

<span title="">2014</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/drfdii35rzaibj3aml5uhvr5xm" style="color: black;">Nature</a> </i> &nbsp;
We find that few genes are truly 'housekeeping', whereas many mammalian promoters are composite entities composed of several closely separated TSSs, with independent cell-type-specific expression profiles  ...  Promoter-based expression analysis reveals key transcription factors defining cell states and links them to binding-site motifs.  ...  Conclusion The FANTOM5 promoter atlas is a natural extension of earlier maps of active transcripts and promoters complementing the sequencing of mammalian genomes 46, 47 .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nature13182">doi:10.1038/nature13182</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24670764">pmid:24670764</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4529748/">pmcid:PMC4529748</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fkpyf4y6nbea5lq7v26lieaqlq">fatcat:fkpyf4y6nbea5lq7v26lieaqlq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200507170041/https://research-repository.griffith.edu.au/bitstream/handle/10072/102455/Mackay-SimPUB151.pdf;jsessionid=55FD33857436EA5CAFB009CB1C18F076?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/72/de/72de520adc39ebafef2d134472a0895e97f8619d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nature13182"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Gateways to the FANTOM5 promoter level mammalian expression atlas

Marina Lizio, Jayson Harshbarger, Hisashi Shimoji, Jessica Severin, Takeya Kasukawa, Serkan Sahin, Imad Abugessaisa, Shiro Fukuda, Fumi Hori, Sachi Ishikawa-Kato, Christopher J Mungall, Erik Arner (+29 others)
<span title="">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/rnpxl3dy6jexfas5kegb73tnbi" style="color: black;">Genome Biology</a> </i> &nbsp;
the FANTOM5 atlas.  ...  Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom. gsc.riken.jp/5/)  ...  [17] , EBI Gene expression atlas [18] , BioGPS [19] ) have become popular tools to survey gene expression levels.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13059-014-0560-6">doi:10.1186/s13059-014-0560-6</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25723102">pmid:25723102</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4310165/">pmcid:PMC4310165</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7p63sfdvszgc7oetvsyomnr2v4">fatcat:7p63sfdvszgc7oetvsyomnr2v4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922062058/http://eprints.whiterose.ac.uk/89279/1/Gateways%20to%20the%20FANTOM5%20promoter%20level%20mammalian%20expression%20atlas..pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bf/d8/bfd87ab85a73b18546f25b1d38c01a67445204b8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13059-014-0560-6"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4310165" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

ZOOMING IN: a new high-resolution gene expression atlas of the brain

Sebastian Jessberger, Fred H Gage
<span title="2007-01-30">2007</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/oayrvwhnr5a2jm4pbva2dvz3ui" style="color: black;">Molecular Systems Biology</a> </i> &nbsp;
Evidently, the wish list could be endlessly continued, for example to gene and protein expression atlases with a subcellular resolution, expression atlases of splice variants, expression data over the  ...  lifespan, or expression atlases of short, uncoding RNAs.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/msb4100122">doi:10.1038/msb4100122</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17262034">pmid:17262034</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1800354/">pmcid:PMC1800354</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/e4ymii6mbzaedhxwcjdkaderfq">fatcat:e4ymii6mbzaedhxwcjdkaderfq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170811135717/http://msb.embopress.org/content/msb/3/1/75.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/06/6b/066b934a44f7d523d34bbac81d21a83884a53e0d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/msb4100122"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800354" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types

Hideya Kawaji, Takeya Kasukawa, Alistair Forrest, Piero Carninci, Yoshihide Hayashizaki
<span title="2017-08-29">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a577b42d4nfhddl7kurxnuyzem" style="color: black;">Scientific Data</a> </i> &nbsp;
This helped classify mammalian promoters into broad-CpG and sharp-TATA associated promoter architectures 9 .  ...  RNAs, across a diverse set of mammalian cell types.  ...  The immediate outcome of the CAGE data was the promoter-level expression atlas consisting of approximately 201,000 and 158,000 CAGE peaks in 1,900 human and 1,200 mouse samples, respectively 11, 13 .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/sdata.2017.113">doi:10.1038/sdata.2017.113</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28850107">pmid:28850107</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5574373/">pmcid:PMC5574373</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5ooytyc2lndm3gvkx4kv6atvgy">fatcat:5ooytyc2lndm3gvkx4kv6atvgy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190224125344/http://pdfs.semanticscholar.org/5883/3c1cabb1986deb1acc1207b9e64d62c19866.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/58/83/58833c1cabb1986deb1acc1207b9e64d62c19866.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/sdata.2017.113"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5574373" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

CKS2 (CDC28 protein kinase regulatory subunit 2)

Y Zhang
<span title="">2011</span> <i title="INIST-CNRS"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwpdxxwe25awxikzl37o54oe5q" style="color: black;">Atlas of Genetics and Cytogenetics in Oncology and Haematology</a> </i> &nbsp;
Expression Basic level expression in all mammalian cells and aberrant expression in cancer cells. Localisation Cytoplasm and nucleus.  ...  CKS2 expression was found to be repressed by p53 both at the mRNA and the protein levels, which may provide a mechanism that explain why CKS2 is upregulated in many types of cancer.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/44906">doi:10.4267/2042/44906</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/iazclibizvfqjonmk3u7xatuke">fatcat:iazclibizvfqjonmk3u7xatuke</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170706092533/http://documents.irevues.inist.fr/bitstream/handle/2042/44906/02-2010-CKS2ID40093ch9q22.pdf%3Bjsessionid%3D0C65B8696272D112473709161D159301?sequence%3D4" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c8/1a/c81ad0e08833efa63ff08303cbc0fdf7130cc965.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/44906"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

The chick pallium displays divergent expression patterns of chick orthologues of mammalian neocortical deep layer-specific genes

Toshiyuki Fujita, Naoya Aoki, Eiko Fujita, Toshiya Matsushima, Koichi J. Homma, Shinji Yamaguchi
<span title="2019-12-31">2019</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tnqhc2x2aneavcd3gx5h7mswhm" style="color: black;">Scientific Reports</a> </i> &nbsp;
Here, we showed that chick orthologues of mammalian L5/6-specific genes, nuclear receptor subfamily 4 group A member 2 and connective tissue growth factor, were strongly expressed in the arcopallium.  ...  However, a limited number of genes were used in these studies.  ...  Acknowledgements This work was supported by the Grants-in-Aid for Scientific Research from the Japan Society for the Promotion of  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-019-56960-4">doi:10.1038/s41598-019-56960-4</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31892722">pmid:31892722</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6938507/">pmcid:PMC6938507</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fwzyavmyejghdki5dq67lqavdq">fatcat:fwzyavmyejghdki5dq67lqavdq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200101011832/https://www.nature.com/articles/s41598-019-56960-4.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9d/04/9d046411fc5b1e84b4a89708092f34e860e9bc70.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-019-56960-4"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6938507" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

BOK (Bcl2-related ovarian killer)

AG Yakovlev
<span title="">2011</span> <i title="INIST-CNRS"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwpdxxwe25awxikzl37o54oe5q" style="color: black;">Atlas of Genetics and Cytogenetics in Oncology and Haematology</a> </i> &nbsp;
BOK (Bcl2-related ovarian killer) Yakovlev AG Atlas Genet Cytogenet Oncol Haematol. 2007;11(2) 87 Homology Evolutionary conserved from fly to human.  ...  It has been shown that transcription activity of the Bok gene depends on expression of p53 and can be directly regulated at the gene promoter level by E2F transcription factors during cell cycle progression  ...  Function BOK promotes both caspase-dependent and caspaseindependent apoptosis at the level of mitochondria in various cell types by promoting the release of proapoptotic mitochondrial factors to the cell  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/38400">doi:10.4267/2042/38400</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/yl5iily5ubbbfpeqvuhjpeydaq">fatcat:yl5iily5ubbbfpeqvuhjpeydaq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922041820/http://documents.irevues.inist.fr/bitstream/handle/2042/38400/11-2006-BOKID824ch2q37.pdf?sequence=2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3f/6f/3f6f105f47eb6c3ff257c1cc2e10fa0f521c003f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/38400"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes

Danielle G Lemay, William F Martin, Angie S Hinrichs, Monique Rijnkels, J Bruce German, Ian Korf, Katherine S Pollard
<span title="">2012</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
within a base pair region of fixed length or a minimum expression level.  ...  Tau incorporates the number of samples in which a gene is expressed, as well as the level of expression. For N samples, a gene with expression in only one sample would have a Tau = N-1.  ...  The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-13-253">doi:10.1186/1471-2105-13-253</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23020263">pmid:23020263</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3575404/">pmcid:PMC3575404</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2pbe5dpez5espl6j7hnfy3cp3y">fatcat:2pbe5dpez5espl6j7hnfy3cp3y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170815193946/http://escholarship.org/uc/item/8991763q.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ea/75/ea754a2a3077b571d0f9a0444e0811dc825ee012.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-13-253"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3575404" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

SIRT1 (sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae))

RC Tseng, YC Wang
<span title="">2011</span> <i title="INIST-CNRS"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwpdxxwe25awxikzl37o54oe5q" style="color: black;">Atlas of Genetics and Cytogenetics in Oncology and Haematology</a> </i> &nbsp;
Identity Other names: EC 3.5.1, hSIR2, hSIRT1, SIR2alpha, SIR2L1 HGNC (Hugo): SIRT1 Location: 10q21.3 SIRT1 gene expression is modulated at both transcriptional and posttranscriptional levels.  ...  E2F1 directly binds to the SIRT1 promoter at a consensus site located at bp position -65 and appears to regulate the basal expression level of SIRT1.  ...  Expression Expression appears to be ubiquitous in adult tissues (although at different levels).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/44919">doi:10.4267/2042/44919</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dk3qsqwwpngobfr4nnssuhmin4">fatcat:dk3qsqwwpngobfr4nnssuhmin4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170817123458/http://documents.irevues.inist.fr/bitstream/handle/2042/44919/03-2010-SIRT1ID44006ch10q21.pdf?sequence=4" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/59/88/5988f8313d4d4a4aa988d77e6e8f8863c612b04a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/44919"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

PTMA (prothymosin, alpha)

K Tanaka, M Kusunoki
<span title="">2011</span> <i title="INIST-CNRS"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwpdxxwe25awxikzl37o54oe5q" style="color: black;">Atlas of Genetics and Cytogenetics in Oncology and Haematology</a> </i> &nbsp;
Cmyc directly regulates the expression of PTMA gene by binding to the E-box of its promoter (Gaubatz et al., 1994) .  ...  PTMA is an abundant mammalian acid nuclear protein.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/44643">doi:10.4267/2042/44643</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/m4ofkly2q5hfjf4tzbntqesoxa">fatcat:m4ofkly2q5hfjf4tzbntqesoxa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170814092829/http://documents.irevues.inist.fr/bitstream/handle/2042/44643/01-2009-PTMAID44094ch2q37.pdf?sequence=3" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9a/85/9a85fca01102c15bbc66f8ba38397826f30f2e39.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/44643"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

The dorsal arcopallium of chicks displays the expression of orthologs of mammalian fear related serotonin receptor subfamily genes

Toshiyuki Fujita, Naoya Aoki, Chihiro Mori, Eiko Fujita, Toshiya Matsushima, Koichi J. Homma, Shinji Yamaguchi
<span title="2020-12-03">2020</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tnqhc2x2aneavcd3gx5h7mswhm" style="color: black;">Scientific Reports</a> </i> &nbsp;
In this study, we showed that orthologs of mammalian 5-HTR genes that are expressed in the BLA, namely 5-HTR1A, 5-HTR1B, 5-HTR2A, 5-HTR2C, 5-HTR3A, and 5-HTR4, are expressed in a part of the chick arcopallium  ...  Our findings can be used as a basis for comparing the processing of fear and its serotonergic modulation in the mammalian amygdala complex and avian arcopallium/amygdala complex.  ...  Serial coronal sections were prepared from level A 14.4 to A 5.6 of the Kuenzel and Masson's atlas 32 .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-020-78247-9">doi:10.1038/s41598-020-78247-9</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33273690">pmid:33273690</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ss57av5wgje4xdnvg4falfibba">fatcat:ss57av5wgje4xdnvg4falfibba</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210429024515/https://www.nature.com/articles/s41598-020-78247-9.pdf?error=cookies_not_supported&amp;code=fe09440e-6eab-4862-bdc4-cffc2ed6da1d" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f3/d5/f3d5fb9080af2e2aa47d8b131f2587b8830588ab.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-020-78247-9"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

VMP1 (vacuole membrane protein 1)

A Ropolo, Ré A Lo, MI Vaccaro
<span title="">2012</span> <i title="INIST-CNRS"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwpdxxwe25awxikzl37o54oe5q" style="color: black;">Atlas of Genetics and Cytogenetics in Oncology and Haematology</a> </i> &nbsp;
Expression VMP1 was characterized because is not constitutively expressed in pancreatic acinar cells and it is highly activated early during experimental acute pancreatitis in acinar cells.  ...  Recently, it has been demonstrated that participate in a novel selective form of autophagy, called zymophagy, mediated by VMP1-USP9x-p62 pathway during acute pancreatitis.  ...  In addition, gemcitabine promoted early VMP1 expression, and downregulation of VMP1 expression significantly reduced cell death.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/47284">doi:10.4267/2042/47284</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7c5tnvvowvhrroo4jxywnycf74">fatcat:7c5tnvvowvhrroo4jxywnycf74</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922032026/http://documents.irevues.inist.fr/bitstream/handle/2042/47284/11-2011-VMP1ID50079ch17q23.pdf?sequence=3" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/99/9f/999f28600da487ac5513d9777c4a24e90b304cfc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/47284"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

PA2G4 (proliferation-associated 2G4, 38kDa)

A Hamburger, A Ghosh, S Awasthi
<span title="">2012</span> <i title="INIST-CNRS"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwpdxxwe25awxikzl37o54oe5q" style="color: black;">Atlas of Genetics and Cytogenetics in Oncology and Haematology</a> </i> &nbsp;
Glioblastoma Prognosis Glioblastoma patients expressing a high level of p48 EBP1 have a worse prognosis than those expressing lower levels of the protein (Kim et al., 2010; Kwon and Ahn, 2011) .  ...  Expression EBP1 has been found to be ubiquitously expressed with high expression levels in skeletal muscle (Yoo et al., 2000) .  ...  This article should be referenced as such: Hamburger A, Ghosh A, Awasthi S. PA2G4 (proliferationassociated 2G4, 38kDa). Atlas Genet Cytogenet Oncol Haematol. 2012; 16(2):131-134.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/46944">doi:10.4267/2042/46944</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2evmyxouyvcqnes5zlgldkqhku">fatcat:2evmyxouyvcqnes5zlgldkqhku</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170814194910/http://documents.irevues.inist.fr/bitstream/handle/2042/46944/09-2011-PA2G4ID41628ch12q13.pdf?sequence=3" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/76/70/7670c2f45d9f0c2ba1abb744a222e80d517c5b6a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/46944"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Cancer Cell-Intrinsic PD-1 and Implications in Combinatorial Immunotherapy

Han Yao, Huanbin Wang, Chushu Li, Jing-Yuan Fang, Jie Xu
<span title="2018-07-30">2018</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/t7exsmmojvgjnhq3pflf7pk6zq" style="color: black;">Frontiers in Immunology</a> </i> &nbsp;
In melanoma cells, PD-1 can be activated by its ligand PD-L1 expressed by tumor cells, modulating downstream mammalian target of rapamycin signaling and promoting tumor growth independent of adaptive immunity  ...  Unlike its oncogenic functions in melanoma and hepatic carcinoma cells, PD-1 seemed to play a distinct role in lung cancer, as blockade of PD-1 instead promoted tumor cells proliferation.  ...  FiGURe 4 | 4 Tumor-intrinsic programmed death 1 (PD-1) expression is widespread in many tumor types. (A) PD-1 mRNA expression level analysis in different cancer tissues from the human protein atlas.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fimmu.2018.01774">doi:10.3389/fimmu.2018.01774</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30105035">pmid:30105035</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6077319/">pmcid:PMC6077319</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/r7p6wnhecze7hlabozpajiiize">fatcat:r7p6wnhecze7hlabozpajiiize</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190226104523/http://pdfs.semanticscholar.org/7033/2d287f4e20de5a5cb72252996507f9d6dedb.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/70/33/70332d287f4e20de5a5cb72252996507f9d6dedb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fimmu.2018.01774"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077319" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Housekeeping genes tend to show reduced upstream sequence conservation

Domènec Farré, Nicolás Bellora, Loris Mularoni, Xavier Messeguer, M Mar Albà
<span title="">2007</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/rnpxl3dy6jexfas5kegb73tnbi" style="color: black;">Genome Biology</a> </i> &nbsp;
Here we test the hypothesis that the number of tissues in which a gene is expressed is related in a significant manner to the extent of promoter sequence conservation.  ...  Upstream sequence conservation and expression Mammalian housekeeping genes show significantly lower promoter sequence conservation, especially upstream of position -500 with respect to the transcription  ...  We considered genes to be expressed in a tissue according to Gene Atlas data only if the expression level was ≥200.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/gb-2007-8-7-r140">doi:10.1186/gb-2007-8-7-r140</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17626644">pmid:17626644</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2323216/">pmcid:PMC2323216</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6qnl5twrvbelnovp7p7x4wtqoi">fatcat:6qnl5twrvbelnovp7p7x4wtqoi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190426231508/https://genomebiology.biomedcentral.com/track/pdf/10.1186/gb-2007-8-7-r140" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a2/1d/a21ddeefbf4b29d13a17aee852355696e204156c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/gb-2007-8-7-r140"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323216" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
&laquo; Previous Showing results 1 &mdash; 15 out of 18,031 results