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An integrated systems approach to crop improvement [chapter]

Graeme L. Hammer, David Jordan
<span title="">2009</span> <i title="WORLD SCIENTIFIC"> Drought Frontiers in Rice </i> &nbsp;
Crop improvement can be viewed as a search strategy on a complex G×M×E adaptation or fitness landscape.  ...  We discuss criteria determining the nature of models required and argue that a greater degree of biological robustness is required for modelling the physiology and genetics of complex traits.  ...  We also thank Greg McLean and Brendan Power for assistance with sorghum G×M×E simulations and analyses.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9789814280013_0011">doi:10.1142/9789814280013_0011</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6gfozkjpszdlrjjxzzcgyvxe6i">fatcat:6gfozkjpszdlrjjxzzcgyvxe6i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922212539/http://library.wur.nl/ojs/index.php/frontis/article/download/1295/867" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c5/a1/c5a1309a21d47b49505e93ad5a82853ba254b9ce.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9789814280013_0011"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> worldscientific.com </button> </a>

Enhancing genetic gain through genomic selection: from livestock to plants

Yunbi Xu, Xiaogang Liu, Junjie Fu, Hongwu Wang, Jiankang Wang, Changling Huang, Boddupalli M. Prasanna, Michael S. Olsen, Guoying Wang, Aimin Zhang
<span title="2019-10-16">2019</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kgrocsjtardrpnk6yqgauzllui" style="color: black;">Plant Communications</a> </i> &nbsp;
New strategies centered on GS for enhancing genetic gain need to be developed.  ...  Large-scale application of GS in plants can be achieved by refining field management to improve heritability estimation and prediction accuracy and developing optimum GS models with the consideration of  ...  ACKNOWLEDGMENTS No conflict of interest declared.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.xplc.2019.100005">doi:10.1016/j.xplc.2019.100005</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33404534">pmid:33404534</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7747995/">pmcid:PMC7747995</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/z3widcxzanatnbqwzsggo7ni54">fatcat:z3widcxzanatnbqwzsggo7ni54</a> </span>
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Modelling and Simulation of Plant Breeding Strategies [chapter]

Jiankang Wang
<span title="2012-01-11">2012</span> <i title="InTech"> Plant Breeding </i> &nbsp;
Modelling and Simulation of Plant Breeding Strategies, Plant Breeding, Dr.  ...  .), ISBN: 978-953-307-932-5, InTech, Available from: http://www.intechopen.com/books/plant-breeding/modelling-and-simulation-of-plant-breeding-strategies  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5772/27863">doi:10.5772/27863</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/74tchaiunzd45dhefrprzf3x7i">fatcat:74tchaiunzd45dhefrprzf3x7i</a> </span>
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An Overview on Systems Biology Driven Plant Breeding

Manoranjan Senapati, Sai S. Dash, Biswajit Lenka, Debadatta Panda
<span title="2020-07-10">2020</span> <i title="Excellent Publishers"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/7xucc2ic5fhwxf7o2afc7w3emu" style="color: black;">International Journal of Current Microbiology and Applied Sciences</a> </i> &nbsp;
Again, it helps in identifying new targets for plant breeding with the help of virtual mutations to these biological networks.  ...  The common types of biological networks are classified based on the components studied at a time (transcriptional regulatory, protein-protein interaction, gene to metabolite and gene regulatory networks  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.20546/ijcmas.2020.907.223">doi:10.20546/ijcmas.2020.907.223</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3y7xcit3jjg23jzfhcbdnidxfu">fatcat:3y7xcit3jjg23jzfhcbdnidxfu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201103145011/https://www.ijcmas.com/9-7-2020/Manoranjan%20Senapati,%20et%20al.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/14/19/1419a1b85265b413d73a569537e7dbf6473ff4a5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.20546/ijcmas.2020.907.223"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Models for navigating biological complexity in breeding improved crop plants

Graeme Hammer, Mark Cooper, François Tardieu, Stephen Welch, Bruce Walsh, Fred van Eeuwijk, Scott Chapman, Dean Podlich
<span title="">2006</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s7wj3rwofngddnaxae7vb54u3e" style="color: black;">Trends in Plant Science</a> </i> &nbsp;
Acknowledgements This work was supported in part by a GRDC grant to G.H. in Australia and an NSF grant 0425908 to S.W. in the USA.  ...  Hence, phenotypic prediction based on a gene-by-gene approach remains elusive.  ...  Plant breeding requires the prediction of phenotype based on genotype to underpin any advances in yield.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.tplants.2006.10.006">doi:10.1016/j.tplants.2006.10.006</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17092764">pmid:17092764</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zhghe2mqirhrhgarmlq37fpjny">fatcat:zhghe2mqirhrhgarmlq37fpjny</a> </span>
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Fab Advances in Fabaceae for Abiotic Stress Resilience: From 'Omics' to Artificial Intelligence

Dharmendra Singh, Priya Chaudhary, Jyoti Taunk, Chandan Kumar Singh, Deepti Singh, Ram Sewak Singh Tomar, Muraleedhar Aski, Noren Singh Konjengbam, Ranjeet Sharan Raje, Sanjay Singh, Rakesh Singh Sengar, Rajendra Kumar Yadav (+1 others)
<span title="2021-09-29">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3loumxx7kzamnlu4h6x3xoz6ay" style="color: black;">International Journal of Molecular Sciences</a> </i> &nbsp;
Integration of pan-omics with novel omics approaches will fast-track legume breeding programs.  ...  'Omics'-based molecular breeding provides better opportunities over conventional breeding for diversifying the natural germplasm together with improving yield and quality parameters.  ...  , ICAR-IARI, New Delhi for healthy discussions during the preparation of this article.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/ijms221910535">doi:10.3390/ijms221910535</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34638885">pmid:34638885</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/527ihatxi5hqleb2lngs32g7pm">fatcat:527ihatxi5hqleb2lngs32g7pm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20211002195242/https://mdpi-res.com/d_attachment/ijms/ijms-22-10535/article_deploy/ijms-22-10535.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c4/59/c459807a5df5664b5d1758078e07692d4143b520.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/ijms221910535"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: A case study of shoot branching in plants [article]

Owen Powell, Francois Fabien Barbier, Kai Peter Voss-Fels, Christine A. Beveridge, Mark Cooper
<span title="2022-02-05">2022</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Therefore, developing gene-to-phenotype network models for traits that integrate the knowledge of networks from systems biology, plant and crop physiology with population genomics has been proposed to  ...  Here, we develop a gene-to-phenotype network for shoot branching, a critical developmental pathway underpinning harvestable yield for many crop species, as a case study to explore the value of developing  ...  Acknowledgements We thank Dr Franziska Fichtner for fruitful discussions about the molecular physiology of the shoot branching network and comments on the manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2022.02.03.479064">doi:10.1101/2022.02.03.479064</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ygsycn4ynra33fhkmtuljqagw4">fatcat:ygsycn4ynra33fhkmtuljqagw4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220423202210/https://www.biorxiv.org/content/biorxiv/early/2022/02/05/2022.02.03.479064.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/70/7f/707f3a8d5af71152671dceb68134d99a304b457a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2022.02.03.479064"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Genomic selection: a breakthrough technology in rice breeding

Yang Xu, Kexin Ma, Yue Zhao, Xin Wang, Kai Zhou, Guangning Yu, Cheng Li, Pengcheng Li, Zefeng Yang, Chenwu Xu, Shizhong Xu
<span title="">2021</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ke5fvh3nu5aovbprby264zuh5u" style="color: black;">Crop Journal</a> </i> &nbsp;
Rice (Oryza sativa) provides a staple food source for more than half the world population.  ...  Previous simulation and experimental studies have demonstrated the usefulness of GS in rice breeding.  ...  Based on a simulation study, Bernardo et al.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cj.2021.03.008">doi:10.1016/j.cj.2021.03.008</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/y6ftwzn3ard6nfskkdchnsae3a">fatcat:y6ftwzn3ard6nfskkdchnsae3a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210528103748/https://pdf.sciencedirectassets.com/287552/AIP/1-s2.0-S221451412100074X/main.pdf?X-Amz-Security-Token=IQoJb3JpZ2luX2VjELL%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLWVhc3QtMSJIMEYCIQDoCM5K0rnPv7cDpXEglpj7A6bmes5ABKILnwJybFs7uwIhAOU7UybUHgrBMkiRqfFUDNQJ66WYrp6OyNgvp99uB13oKvoDCFsQAxoMMDU5MDAzNTQ2ODY1IgyYVAoCheIfSxTD5rIq1wOg0ji11u9ubmFswe%2BXXvWM89mHv7%2BSmqq1wIpmcAbXYTltqv2i1M7vwgACYYuTgiLlVzdoneYFiFp5x1dv5U8Cn1uSv9gttN0Iwf%2FFV0Hh9IT9etaNjdawaaDqODFUgQt0G6za4Y9%2BVYFsirrAbn0PCvWco98IAf4uzxeoz0E8Z7N807ToSMtBZBo%2BTnwQfs2up69F4jyDAvacKNYyvOWx31xVBGviFGareEqVmCgL84uQaAItU5nQNDypuE%2FuaFEy%2B8QJWjwd79vjpAnol9lod%2Bvp6wkSou6QNsrId1Jyf%2FsfYvCRfGE9atP1M4qkfy4EhxylUodortiawqcezMbzmXpce8femOcOcWZMPQ9qKSP9NxYyk1GKHpg2QrBa7KkAmDTPF7YiLNOZA%2Fi50IGCac8ZePLHbVOBA5%2F7L6RoQ%2BVz2qxjG3JaYfG%2F4jdatKStobdoEVREfN58dkNl3eynXx7mHflwT%2FFBcphjoQhHbgQHH0J11aNOpXwncJggHWZkxJsArp0U%2BEVHWKenfS1RXsyP3vl0CtohFT0JMa3ElEenCXOpUxLECxp26LwlCJ3uKSpsBjvblvHOQpRaHeD3X2l97mlBwbyLNgsSy1kBpaCbdPqSXlcwpP%2FChQY6pAEcPe%2FQTltasLLiYsn9pNnUWxLJz1X3AtfrAWsIWLp7lJhtxMsxN3mwFWiJemBpNPE%2BKe24aOKXN%2Blq%2FobXq%2Fq5chYhzH1slYn9DqMfiYryxXROhRP9AfK9vpI%2FRfpbMRPjJnQpB15QhskCUr8p%2FJmi0cPGLsckCMTARuHmqbDyPHlDTVQYhHw%2FfXTEqxFYYoNWuPcMsqPP%2F8tJsrcCpHJ%2FrfD5Zg%3D%3D&amp;X-Amz-Algorithm=AWS4-HMAC-SHA256&amp;X-Amz-Date=20210528T103745Z&amp;X-Amz-SignedHeaders=host&amp;X-Amz-Expires=300&amp;X-Amz-Credential=ASIAQ3PHCVTYSHFFAXMD%2F20210528%2Fus-east-1%2Fs3%2Faws4_request&amp;X-Amz-Signature=73705553f9f3b632d8f3d6ab4b38279d4ea729e0aeb9b7e3e0df80825b0e62a6&amp;hash=bdcd1ed2d658b2ed70b6e5bf2d0c4f81f34031823e7f7c3c5a2f032996928925&amp;host=68042c943591013ac2b2430a89b270f6af2c76d8dfd086a07176afe7c76c2c61&amp;pii=S221451412100074X&amp;tid=spdf-c8cafded-40ae-4fcf-bbca-e566de8a9664&amp;sid=b401029c49a2e346c95a030321e45b37ccf6gxrqa&amp;type=client" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c6/57/c6573ef97334d23c3af68f4377545a496038cdc3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cj.2021.03.008"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Editorial: Machine Learning for Big Data Analysis: Applications in Plant Breeding and Genomics

Salvatore Esposito, Valentino Ruggieri, Pasquale Tripodi
<span title="2022-05-31">2022</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/r7trx2kj6je5jhtaoy3rztibgy" style="color: black;">Frontiers in Genetics</a> </i> &nbsp;
Among the possible strategies that researchers can adopt to accelerate crop breeding and boost plant production, genomic selection (GS) was proposed in the last few years to design novel breeding programs  ...  In this stimulating scenario, the Research Topic introduces five original research papers and one review focusing on computational analysis and machine learning-based approaches for plant breeding and  ...  Although no ML model was reported by authors, the extensive analyses performed shed light on the genome evolution of this species providing experimental support for detecting genes underlying the biosynthesis  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fgene.2022.916462">doi:10.3389/fgene.2022.916462</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/35711914">pmid:35711914</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC9197449/">pmcid:PMC9197449</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/foxmaidycrdkrdczz3tvf7sbzu">fatcat:foxmaidycrdkrdczz3tvf7sbzu</a> </span>
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Harnessing translational research in wheat for climate resilience

Matthew P Reynolds, Janet M Lewis, Karim Ammar, Bhoja R Basnet, Leonardo Crespo-Herrera, José Crossa, Kanwarpal S Dhugga, Susanne Dreisigacker, Philomin Juliana, Hannes Karwat, Masahiro Kishii, Margaret R Krause (+13 others)
<span title="2021-06-17">2021</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gy3m6flsmfc6dmfozi3oq3pjiy" style="color: black;">Journal of Experimental Botany</a> </i> &nbsp;
The global impact of these outputs will be validated through the International Wheat Improvement Network, a global germplasm development and testing system that contributes key productivity traits to ~  ...  drought resilience, specifically: improving crop design targets using big data approaches, developing phenomic tools for field-based screening and research, applying genomic technologies to elucidate bases  ...  ×winter crossing strategies and establishing a HeDWIC winter wheat hub.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/jxb/erab256">doi:10.1093/jxb/erab256</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34139769">pmid:34139769</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8272565/">pmcid:PMC8272565</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/usbey4t42zcnziciuhmtrrsx5a">fatcat:usbey4t42zcnziciuhmtrrsx5a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210804121217/https://watermark.silverchair.com/erab256.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAsIwggK-BgkqhkiG9w0BBwagggKvMIICqwIBADCCAqQGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMTli-5em8dJ1Op6ZWAgEQgIICdbnV2-8DvO4wDNi5dtcd5x6CuXtBqEIjeVUCkHtNVMDqm1_BQtOTt9Uo4-pA3mxqfrRtRX3eOM9vaov61CxO2603dl3cH_Gd6FahzsOBlQx9fqN4gSOKAtRc31Lf2PxOGocARTsyGZFe585pvPD_AUfs4Z8W7XzUoAGLhoPjBVyqXj3OEG7tU70bmXcxKVDsLz1dzjZzplRI-Wkp5uHJyF7EEiF7sMKAJf6Yw36sAPpNsZAQ7D_CO2gMqr-U1g7oPO_EJ2ywQCbe5Zz_n5KngcYTMoC7qW3F1R8HOz6Cj68p5NoiIUE0t_wqrv-wBX7Y9Tt-hs96bMTmlZ5Gi-nYxs5psPB42ncWzGNNelTgRQeLp8e3XR8Nxs2l61eivBxEcmxdP3FZZbAn-GS70nGHnvVX86wiIrQf6K-IQlpSlMLkrQoeOfK6AmBVc-o2za8Q-CTH6hYoN-kgYeY-lRFSwRpRobAX11AMjey_RBeAcl66VMIh5QE4Tdzogz6soiylhW7-guD8mF0Ggknpb3pGEXo4ZGL5AVdAuyGtaQqJPrwjHhBw8_L6CViSAgNseaDnIq367Qyy4dRHbwDPt4pGX2U4s_yFzmFSemWflw30d_IFpDjiWI_7VNV-mdjyEDjvFxztpa5ndbDypg7s8DbknHBxEsxo5uTRhwmp0-h0mBialOuG8ek4Fht6fe96IzBTt-mTlM3FkpZnTCHOkWPk3KIr1C68POhIPH1aj2IXKOpX9655g9c7kGmbKmXNBRcfr3oE-Orj-FF5BKB1UzWxJv-KD7WHVjo-j6K7Cw1ycRVfOPzcX2Pg-oMDkk6dai843pgtkHmu" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/67/ae/67ae3dee985a427107a482d825b706b086a44352.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/jxb/erab256"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272565" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Advances in Genomics-Based Breeding of Barley: Molecular Tools and Genomic Databases

Asad Riaz, Farah Kanwal, Andreas Börner, Klaus Pillen, Fei Dai, Ahmad M. Alqudah
<span title="">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/yws6xlpwzjf7llvhkn3wayuvfu" style="color: black;">Agronomy</a> </i> &nbsp;
, and the most recent assembly of a barley pan-genome will boost the genomics-based breeding for barley improvement.  ...  However, the conventional breeding framework needs to be changed to facilitate genomics-based breeding of barley.  ...  Acknowledgments: We are thankful to Iftikhar Mehdi for helping with the figure designs. Conflicts of Interest: The authors have no conflict of interest to declare.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/agronomy11050894">doi:10.3390/agronomy11050894</a> <a target="_blank" rel="external noopener" href="https://doaj.org/article/709b175d7b3b4954a9d5c5bd3d16ceeb">doaj:709b175d7b3b4954a9d5c5bd3d16ceeb</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bkkegjnz7zesbf2l3d5u7nf5ya">fatcat:bkkegjnz7zesbf2l3d5u7nf5ya</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210717134919/https://res.mdpi.com/d_attachment/agronomy/agronomy-11-00894/article_deploy/agronomy-11-00894.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/38/ff38c8f1933bfdc360108d2840faad39ede3ed31.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/agronomy11050894"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks

Alexander A. Myburg, Steven G. Hussey, Jack P. Wang, Nathaniel R. Street, Eshchar Mizrachi
<span title="2019-06-20">2019</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/bbmitkj3efgeppizzjrx6w5emu" style="color: black;">Frontiers in Plant Science</a> </i> &nbsp;
Such a bioengineering paradigm, together with accelerated genomic breeding, will be crucial for the development of a new generation of woody biorefinery crops.  ...  With this information in hand, it is now possible to start using synthetic biology and genome editing techniques in a bioengineering approach based on a deeper understanding and rational design of biological  ...  Systems modeling therefore provides a unique opportunity to guide multi-trait engineering and breeding strategies to create novel tree feedstocks optimized for fast growth and conversion to energy and  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fpls.2019.00775">doi:10.3389/fpls.2019.00775</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31281326">pmid:31281326</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6597874/">pmcid:PMC6597874</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/santgegndnayxaph7xyexll4fy">fatcat:santgegndnayxaph7xyexll4fy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200211004043/https://fjfsdata01prod.blob.core.windows.net/articles/files/420598/pubmed-zip/.versions/1/.package-entries/fpls-10-00775/fpls-10-00775.pdf?sv=2015-12-11&amp;sr=b&amp;sig=USJUOPvgGxc1T%2FJLZ%2B2Ne1brrZD4VmmlM6%2FhsdxK2%2FQ%3D&amp;se=2020-02-11T00%3A41%3A13Z&amp;sp=r&amp;rscd=attachment%3B%20filename%2A%3DUTF-8%27%27fpls-10-00775.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f8/ae/f8ae5db213d9d5c17bd38a63b068316293ba90ed.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fpls.2019.00775"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597874" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Systems biology for crop improvement

Lekha T Pazhamala, Himabindu Kudapa, Wolfram Weckwerth, A Harvey Millar, Rajeev K Varshney
<span title="2021-05-05">2021</span> <i title="The Plant Genome"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2beftrmbpbhajielvgjvw76hu4" style="color: black;">The Plant Genome</a> </i> &nbsp;
Most of these datasets in different crop species, however, were studied independently and as a result, full insight could not be gained on the molecular basis of complex traits and biological networks.  ...  external environment for a phenotypic expression.  ...  For instance, well-designed mathematical models based on time series datasets allow the identification of key candidate genes for potential use in the breeding programs and thus devise a systems biology-based  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/tpg2.20098">doi:10.1002/tpg2.20098</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33949787">pmid:33949787</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/a7eai73ohbhn5do5x7m2ltb6gu">fatcat:a7eai73ohbhn5do5x7m2ltb6gu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210716022519/https://acsess.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20098" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/25/cf/25cf4be2605122b1ed4f770d872f98802d60db65.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/tpg2.20098"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Genetic and Economic Analysis of a Targeted Marker-assisted Wheat Breeding Strategy

Haydn Kuchel, Guoyou Ye, Rebecca Fox, Stephen Jefferies
<span title="">2005</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4mtd2ytcejeufiqjwpadjkgjpy" style="color: black;">Molecular breeding</a> </i> &nbsp;
In this paper, computer simulation was used to design a genetically effective and economically efficient marker-assisted breeding strategy aimed at a specific outcome.  ...  The application of molecular markers was considered at three phases in the strategy: allele enrichment in the BC 1 F 1 population, gene selection at the haploid stage and the selection for recurrent parent  ...  Acknowledgements The authors acknowledge the Grains Research and Development Corporation and Cooperative Research Centre for Molecular Plant Breeding for their financial support of this project.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11032-005-4785-7">doi:10.1007/s11032-005-4785-7</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/tyx73qkg7ffvzeom4vv6dqiyai">fatcat:tyx73qkg7ffvzeom4vv6dqiyai</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809052614/https://www.iatp.org/files/421_2_80744.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a9/07/a907d1327505ac43c54e90ddb8e9a86cce07aa84.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11032-005-4785-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Physiological breeding

Matthew Reynolds, Peter Langridge
<span title="">2016</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/qc64jkjd3bbafjfrajfx4j6jle" style="color: black;">Current opinion in plant biology</a> </i> &nbsp;
Such information, combined with results from physiological crosses designed to test novel trait combinations, lead to more precise breeding strategies, and feed models of genotype-by-environment interaction  ...  Recent examples of these include screening genetic resources for novel expression of Calvin cycle enzymes, identification of common genetic bases for heat and drought adaptation, and genetic dissection  ...  Based on traits identified in conceptual models (e.g.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.pbi.2016.04.005">doi:10.1016/j.pbi.2016.04.005</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27161822">pmid:27161822</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/envtvzywpvailcp23j7g4a6xtu">fatcat:envtvzywpvailcp23j7g4a6xtu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171004195235/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/e59/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMTM2OTUyNjYxNjMwMDYyMA%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/00/a1/00a14614c401c1625755e2d7da1b8f98f3b5862f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.pbi.2016.04.005"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>
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