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A method of automated landmark generation for automated 3D PDM construction

A.D Brett, C.J Taylor
2000 Image and Vision Computing  
A previous publication has described a method of pairwise 3D surface correspondence for the automated generation of landmarks on a set of examples from a class of shape [3] .  ...  We show how the pairwise corresponder can be used in a extension of an existing framework for establishing dense correspondences between a set of training examples [4] to build a 3D Point Distribution  ...  Such a tree provides a framework for the automated landmarking of the input example shapes necessary for the production of a 3D PDM.  ... 
doi:10.1016/s0262-8856(99)00077-3 fatcat:zn34bvn4tzc5vpq6gj6f7mk7s4

A Method of Automated Landmark Generation for Automated 3D PDM Construction

A. D. Brett, C. J. Taylor
1998 Procedings of the British Machine Vision Conference 1998  
A previous publication has described a method of pairwise 3D surface correspondence for the automated generation of landmarks on a set of examples from a class of shape [3] .  ...  We show how the pairwise corresponder can be used in a extension of an existing framework for establishing dense correspondences between a set of training examples [4] to build a 3D Point Distribution  ...  Such a tree provides a framework for the automated landmarking of the input example shapes necessary for the production of a 3D PDM.  ... 
doi:10.5244/c.12.91 dblp:conf/bmvc/BrettT98 fatcat:ifawo5di6jadpl4k5ebh4ulg4e

AUTOMATED CONSTRUCTION OF 3D STATISTICAL SHAPE MODELS

Tomaž Vrtovec, Dejan Tomaževič, Boštjan Likar, Ludvik Travnik, Franjo Pernuš
2011 Image Analysis and Stereology  
This paper presents a novel method for automated construction of 3D point distribution models.  ...  The key to the automated construction of a three-dimensional (3D) statistical shape model is the identification of corresponding landmarks on training shapes, which is a challenging task.  ...  In this paper a novel method for automated construction of 3D PDMs is proposed, which requires the segmentation of only one training structure.  ... 
doi:10.5566/ias.v23.p111-120 fatcat:3q6lmxwpkrf2vmsx5hihwtfvqm

Automatic Landmark Generation for Point Distribution Models

A. Hill, C. J. Taylor
1994 Procedings of the British Machine Vision Conference 1994  
Here, we describe a method for automatically generating PDMs from a training set of pixellated boundaries in 2D.  ...  Generating the landmarks from 2D boundaries or 3D surfaces has previously been a manual process.  ...  Overview of Method In order to generate the optimal PDM for a given class of objects, from a set of example boundaries, we must select the pixel location of each landmark on the boundary of each example  ... 
doi:10.5244/c.8.42 dblp:conf/bmvc/HillT94 fatcat:ryyd5m76ynhkxdn53diydlx56q

Automated Pivot Location for the Cartesian-Polar Hybrid Point Distribution Model

T Heap, DC Hogg
1995 Procedings of the British Machine Vision Conference 1995  
In this paper we present a method for automatically identifying rigid model parts and pivot points from the training data.  ...  The Point Distribution Model (PDM) has already proved useful for many tasks involving the location or tracking of deformable objects.  ...  Thanks are due to members of the Leeds University Vision Group for general help and ideas.  ... 
doi:10.5244/c.9.10 dblp:conf/bmvc/HeapH95 fatcat:foyxvbbimjfixhrouakk22odm4

Congenital aortic disease: 4D magnetic resonance segmentation and quantitative analysis

Fei Zhao, Honghai Zhang, Andreas Wahle, Matthew T. Thomas, Alan H. Stolpen, Thomas D. Scholz, Milan Sonka
2009 Medical Image Analysis  
Automated and accurate segmentation of the aorta in 4D (3D+time) cardiovascular magnetic resonance (MR) image data is important for early detection of congenital aortic disease leading to aortic aneurysms  ...  MR datasets were used for development and performance evaluation of our method.  ...  Van Waning for their contribution to the project. This work was supported, in part, by the NIH grants R01HL071809 and R0lEB004640.  ... 
doi:10.1016/j.media.2009.02.005 pmid:19303351 pmcid:PMC2727644 fatcat:hblw3jldinhyfewbokjoztf6om

Hierarchical patch generation for multilevel statistical shape analysis by principal factor analysis decomposition

Mauricio Reyes, Miguel A. González Ballester, Nina Kozic, Ronald M. Summers, Marius George Linguraru, Robert C. Molthen, John B. Weaver
2010 Medical Imaging 2010: Biomedical Applications in Molecular, Structural, and Functional Imaging  
Our method further presents the automated hierarchical partitioning of organs into anatomically significant components that represent potentially important constraints for abdominal diagnosis and modeling  ...  The analysis of deformation fields showed a strong correlation with anatomical landmarks and known mechanical deformations in the abdomen.  ...  ACKNOWLEDGEMNT This work was supported in part by the Intramural Research Program of the National Institutes of Health, Clinical Center.  ... 
doi:10.1117/12.843253 fatcat:px73kozbhfhafjomrjp6svgdai

Benchmarking off-the-shelf statistical shape modeling tools in clinical applications [article]

Anupama Goparaju, Alexandre Bone, Nan Hu, Heath B. Henninger, Andrew E. Anderson, Stanley Durrleman, Matthijs Jacxsens, Alan Morris, Ibolya Csecs, Nassir Marrouche, Shireen Y. Elhabian
2020 arXiv   pre-print
Statistical shape modeling (SSM) is widely used in biology and medicine as a new generation of morphometric approaches for the quantitative analysis of anatomical shapes.  ...  We propose validation frameworks for anatomical landmark/measurement inference and lesion screening.  ...  The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.  ... 
arXiv:2009.02878v1 fatcat:pjs2vxy7wzhsxeosqr2tl5e7xa

Analysis of temporomandibular joint dysfunction in paediatric patients with unilateral crossbite using automatically generated finite element models

Javier Ortún-Terrazas, José Cegoñino, Edson Illipronti-Filho, Amaya Pérez del Palomar
2020 Computer Methods in Biomechanics and Biomedical Engineering  
The evaluation of temporomandibular joint (TMJ) dysfunction using finite element models is a time consuming process that requires extensive technical knowledge.  ...  We combined a statistical active appearance model with automated modelling algorithms to biomechanically study the relationship between TMJ malformations and dysfunction in radiographs from 20 paediatric  ...  Funding This work was supported by the Spanish Ministry of Economy and Competitiveness (project DPI 2016-79302-R), the European Social Funds and Regional Government of Aragon (grant 2016/20) and Ibercaja-Cai  ... 
doi:10.1080/10255842.2020.1755275 pmid:32400179 fatcat:2yyhifqkonfxlddsug3dbpajtu

On the Evaluation and Validation of Off-the-shelf Statistical Shape Modeling Tools: A Clinical Application [article]

Anupama Goparaju, Ibolya Csecs, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Ross Whitaker, Shireen Elhabian
2018 arXiv   pre-print
Statistical shape modeling (SSM) has proven useful in many areas of biology and medicine as a new generation of morphometric approaches for the quantitative analysis of anatomical shapes.  ...  Hence, understanding the consequences of different SSM tools for the final analysis is critical for the careful choice of the tool to be deployed in real clinical scenarios.  ...  ShapeWorks [5] is a groupwise correspondence approach that implements the particle-based modeling method (PBM) [6] , which constructs compact statistical landmark-based models of shape ensembles that  ... 
arXiv:1810.03987v1 fatcat:an5fr5su5jgjhl4ev3ow5v2wmm

Left-ventricular epi- and endocardium extraction from 3D ultrasound images using an automatically constructed 3D ASM

C. Butakoff, S. Balocco, F.M. Sukno, C. Hoogendoorn, C. Tobon-Gomez, G. Avegliano, A.F. Frangi
2014 Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization  
In this paper, we propose an automatic method for constructing an active shape model (ASM) to segment the complete cardiac left ventricle in 3D ultrasound (3DUS) images, which avoids costly manual landmarking  ...  The automatic construction of the ASM has already been addressed in the literature; however, the direct application of these methods to 3DUS is hampered by a high level of noise and artefacts.  ...  Jensen, from the Technical University of Denmark, for providing us with a 64-bit version of Field II. We are also grateful to various clinicians who contributed data to this study: F. Carreras and R.  ... 
doi:10.1080/21681163.2014.910703 fatcat:kwt76sxei5g4hfolz2me47x6pm

Adapting Active Shape Models for 3D Segmentation of Tubular Structures in Medical Images [chapter]

Marleen de Bruijne, Bram van Ginneken, Max A. Viergever, Wiro J. Niessen
2003 Lecture Notes in Computer Science  
Each training example is described by a shape vector x containing the coordinates of n landmark points that correspond between shapes.  ...  In some applications, however, the linear model of gray level appearance around a contour that is used in ASM is not sufficient for accurate boundary localization.  ...  Blanken-steijn from the Department of Vascular Surgery for providing the datasets and expert segmentations.  ... 
doi:10.1007/978-3-540-45087-0_12 fatcat:ba5ahslvn5fsbl75j64lkpky7u

Automated Segmentation of the Left Ventricle in Cardiac MRI [chapter]

Michael R. Kaus, Jens von Berg, Wiro Niessen, Vladimir Pekar
2003 Lecture Notes in Computer Science  
We present a fully automated deformable model technique for myocardium segmentation in 3D MRI.  ...  We investigate the extension to 4D by incorporating a constraint on the allowed deformation based on a learned example and show illustrative results for 4D MRI.  ...  Conclusion We presented a novel method for modeling and fully automated segmentation of LV in 3D cardiac MRI time-series with a mean error of 1.28 ± 0.82 mm for the end-diastolic phase.  ... 
doi:10.1007/978-3-540-39899-8_54 fatcat:og4t6twblvaf3d57mxeh2ndgu4

Reconstructing 3D Pose and Motion from a Single Camera View

R. Bowden, T. A. Mitchell, M. Sarhadi
1998 Procedings of the British Machine Vision Conference 1998  
This paper presents a model based approach to human body tracking in which the 2D silhouette of a moving human and the corresponding 3D skeletal structure are encapsulated within a non-linear Point Distribution  ...  It is shown how this information, along with the position of landmark features such as the hands and head can be used to reconstruct information about the pose and structure of the human body from a monoscopic  ...  Future Work A full body model needs to be constructed for the generic tracking and pose estimation of humans.  ... 
doi:10.5244/c.12.90 dblp:conf/bmvc/BowdenMS98 fatcat:275i2vxfz5hjzfl4esl5naozvm

Regional 3D superimposition to assess temporomandibular joint condylar morphology

J Schilling, L C R Gomes, E Benavides, T Nguyen, B Paniagua, M Styner, V Boen, J R Gonçalves, L H S Cevidanes
2014 Dentomaxillofacial Radiology  
A landmark-based approach was used for the registration of across-subject condylar models, and temporomandibular joint osteoarthritis vs control group differences were computed with shape analysis.  ...  A voxel-based approach was used for registration of longitudinal scans calculated x, y, z degrees of freedom for translation and rotation.  ...  3D Slicer software to facilitate the automated voxel-based registration.  ... 
doi:10.1259/dmfr.20130273 pmid:24170802 pmcid:PMC3887483 fatcat:acxoljqhovfahca6lafayy6ijq
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