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A k-Way Greedy Graph Partitioning with Initial Fixed Vertices for Parallel Applications

Maria Predari, Aurelien Esnard
2016 2016 24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP)  
In this paper, we propose a new direct k-way greedy graph growing algorithm, called KGGGP, that overcomes this issue and succeeds to produce partition with better quality than RB while respecting the constraint  ...  However, in applications where initial fixed vertices are used to model additional constraints of the problem, RB based methods often fail to produce partitions of good quality.  ...  More particularly, the KGGGP algorithm is a direct k-way greedy graph growing partitioning algorithm that successfully handles initial fixed vertices and produces partitions of better quality.  ... 
doi:10.1109/pdp.2016.109 dblp:conf/pdp/PredariE16 fatcat:77s2d6fmtzh3hjv2w4klmuu7iy

Comparison of initial partitioning methods for multilevel direct k -way graph partitioning with fixed vertices

Maria Predari, Aurélien Esnard, Jean Roman
2017 Parallel Computing  
The first one, called kgggp is a direct k-way greedy graph growing partitioning that properly handles fixed vertices while the second one, introduced in kPaToH, uses RB and a post-processing technique  ...  A common approach to solve this problem is to use graph representation and perform a graph partitioning in k-parts using the multilevel framework and the recursive bisection (RB) paradigm.  ...  Acknowledgment The authors would like to thank Bora Uçar for his valuable advice for the implementation of the rbbgm method used in this study.  ... 
doi:10.1016/j.parco.2017.05.002 fatcat:4oscd4cprvhillakcgaswax5om

Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations

Umit V. Catalyurek, Erik G. Boman, Karen D. Devine, Doruk Bozdag, Robert Heaphy, Lee Ann Riesen
2007 2007 IEEE International Parallel and Distributed Processing Symposium  
The new model can be solved using hypergraph partitioning with fixed vertices.  ...  Hypergraph partitioning is a successful model for minimizing communication volume in scientific computations, and partitioning software for the static case is widely available.  ...  Acknowledgments We thank Bruce Hendrickson and Vitus Leung for their contributions to the Zoltan project.  ... 
doi:10.1109/ipdps.2007.370258 dblp:conf/ipps/CatalyurekBDBHR07 fatcat:juakmxjherhozp73m7bcmyvvry

Benchmarking of Graph Partitioning Tools and Techniques

2019 International journal of recent technology and engineering  
In this paper the authors have used a systematic literature review to provide benchmarking on influencing parameters for graph partitioning tools, which is the principal contribution of the present paper  ...  Also authors have suggested future research directions and anomalies for improvement in tools and techniques for Graph Partitioning.  ...  It shows a good partition. For an illustration, in k-way partitioning, graph G is partitioned into k equal components with minimum cut.  ... 
doi:10.35940/ijrte.d7369.118419 fatcat:hy2qdjhk6zbd5al5up26qce7yy

A repartitioning hypergraph model for dynamic load balancing

Umit V. Catalyurek, Erik G. Boman, Karen D. Devine, Doruk Bozdağ, Robert T. Heaphy, Lee Ann Riesen
2009 Journal of Parallel and Distributed Computing  
We show that the new model can be realized using hypergraph partitioning with fixed vertices and describe our parallel multilevel implementation within the Zoltan load-balancing toolkit.  ...  In parallel adaptive applications, the computational structure of the applications changes over time, leading to load imbalances even though the initial load distributions were balanced.  ...  Acknowledgments We thank Danny Dunlavy for providing the Citeseer data; Richard Drake and Johan Steensland for the adaptive mesh refinement data; and Rich Lee, Mark Shephard, and Xiaojuan Luo for the slac6M  ... 
doi:10.1016/j.jpdc.2009.04.011 fatcat:ogrycndn3rhsrgoxrkzfkpkuf4

The left greedy Lie algebra basis and star graphs

Benjamin Walter, Aminreza Shiri
2016 Involve. A Journal of Mathematics  
Our constructions further equip the left-greedy brackets with a dual monomial Lie coalgebra basis of "star" graphs.  ...  We construct a basis for free Lie algebras via a "left-greedy" bracketing algorithm on Lyndon-Shirshov words.  ...  Acknowledgements We would like to thank the reviewer for a careful and detailed reading of our submission and also for suggesting that we consider an application of Lazard elimination (see Remark 3.4)  ... 
doi:10.2140/involve.2016.9.783 fatcat:eoyqs2zp7zgvloaf6ibip4ctyu

A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers [chapter]

Erik G. Boman, Doruk Bozdağ, Umit Catalyurek, Assefaw H. Gebremedhin, Fredrik Manne
2005 Lecture Notes in Computer Science  
In large-scale parallel applications a graph coloring is often carried out to schedule computational tasks.  ...  In this paper, we describe a new distributedmemory algorithm for doing the coloring itself in parallel.  ...  (i) Initial partitioning. In a parallel application, the graph is usually already distributed among the processors in a reasonable way.  ... 
doi:10.1007/11549468_29 fatcat:e7spbxffqnc5fju4maar2can7i

Speeding up Parallel Graph Coloring [chapter]

Assefaw H. Gebremedhin, Fredrik Manne, Tom Woods
2006 Lecture Notes in Computer Science  
Our implementations use OpenMP for parallelization and Metis for graph partitioning. The experiments show that we get up to a 70 % reduction in runtime compared to the previous algorithm.  ...  This paper presents new efficient parallel algorithms for finding approximate solutions to graph coloring problems.  ...  In a parallel application the graph is usually already distributed among the processors in a reasonable way.  ... 
doi:10.1007/11558958_130 fatcat:fbw7jbcnwvapzb2vixhkfnbjna

Multilevelk-way Partitioning Scheme for Irregular Graphs

George Karypis, Vipin Kumar
1998 Journal of Parallel and Distributed Computing  
then we uncoarsen and refine it to construct a k-way partitioning for the original graph.  ...  In this paper, we present and study a class of graph partitioning algorithms that reduces the size of the graph by collapsing vertices and edges, we find a k-way partitioning of the smaller graph, and  ...  These coarse k vertices can serve as the initial k-way partitioning of the original graph. There are two problems with this approach.  ... 
doi:10.1006/jpdc.1997.1404 fatcat:gr2wwjixxbfcjfzc3tiasxr3gm

Boosting Vertex-Cut Partitioning for Streaming Graphs

Hooman Peiro Sajjad, Amir H. Payberah, Fatemeh Rahimian, Vladimir Vlassov, Seif Haridi
2016 2016 IEEE International Congress on Big Data (BigData Congress)  
For example, it takes 415 seconds for a state-of-the-art partitioner to work on a social network graph with 117 millions edges.  ...  We introduce an efficient platform for boosting streaming graph partitioning algorithms. Our solution, called HoVerCut, is Horizontally and Vertically scalable.  ...  ACKNOWLEDGEMENT This work was supported by the End-to-End Clouds project funded by the Swedish Foundations for Strategic Research under the contract RIT10-0043 and the BIDAF project funded by KK-stiffen  ... 
doi:10.1109/bigdatacongress.2016.10 dblp:conf/bigdata/SajjadPRVH16 fatcat:hqoc7zi755cifl66qwz3sauina

Greedy, prohibition, and reactive heuristics for graph partitioning

R. Battiti, A.A. Bertossi
1999 IEEE transactions on computers  
A greedy construction scheme with an appropriate tie-breaking rule (MIN-MAX-GREEDY) produces initial assignments in a very fast time.  ...  When the method is not competitive, the initial assignments are used as starting points for a prohibition-based scheme, where the prohibition is chosen in a randomized and reactive way, with a bias towards  ...  Diekmann for providing us with benchmark graphs and, indirectly, D.S. Johnson and the other researchers for making the original graphs available. F. Pellegrini and R.  ... 
doi:10.1109/12.762522 fatcat:m6cpkixrpbco3op5zomszxquea

A parallel graph partitioning algorithm to speed up the large-scale distributed graph mining

ZengFeng Zeng, Bin Wu, Haoyu Wang
2012 Proceedings of the 1st International Workshop on Big Data, Streams and Heterogeneous Source Mining Algorithms, Systems, Programming Models and Applications - BigMine '12  
A efficient and scalable partitioning algorithm is crucial for large-scale distributed graph mining. In this paper, we propose a novel parallel multi-level stepwise partitioning algorithm.  ...  The experimental results show that our algorithm generally outperforms the existing algorithms and has a high efficiency and scalability for large-scale graph partitioning.  ...  ACKNOWLEDGMENTS The authors would like to thank the anonymous reviewers for their valuable comments and suggestions to improve the quality of this paper.This work is supported by the National Natural Science  ... 
doi:10.1145/2351316.2351325 dblp:conf/kdd/ZengWW12 fatcat:njhkucpffnc4jikyewnmxezysm

Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation

Doruk Bozdağ, Ümt V. Çatalyürek, Assefaw H. Gebremedhin, Fredrik Manne, Erik G. Boman, Füsun Özgüner
2010 SIAM Journal on Scientific Computing  
The distance-2 graph coloring problem aims at partitioning the vertex set of a graph into the fewest sets consisting of vertices pairwise at distance greater than 2 from each other.  ...  Parallel speedup is achieved through graph partitioning, speculative (iterative) coloring, and a bulk synchronous parallel-like organization of parallel computation.  ...  We thank the anonymous referees for their valuable comments, which helped us improve the presentation of this paper.  ... 
doi:10.1137/080732158 fatcat:eukswuqoyzfdpcdfq5b6gbnxhi

Incrementalization of graph partitioning algorithms

Wenfei Fan, Muyang Liu, Chao Tian, Ruiqi Xu, Jingren Zhou
2020 Proceedings of the VLDB Endowment  
Given a (vertex-cut or edge-cut) partition C(G) of a graph G and updates ∆G to G, it is to compute changes ∆O to C(G), yielding a partition of the updated graph such that (a) the new partition is load-balanced  ...  Given graph G, updates ∆G to G and a partition A(G) of G by A, A∆ computes changes ∆O to A(G) such that (1) applying ∆O to A(G) produces a new partition of the updated graph although it may not be exactly  ...  As an extension of the greedy graph growing method [26] for bi-partitioning, it computes the k-way partitions directly.  ... 
doi:10.14778/3389133.3389142 fatcat:itwgevngkfcalng2zn6vf7wlci

Parallel hypergraph partitioning for scientific computing

K.D. Devine, E.G. Boman, R.T. Heaphy, R.H. Bisseling, U.V. Catalyurek
2006 Proceedings 20th IEEE International Parallel & Distributed Processing Symposium  
Graph partitioning is often used for load balancing in parallel computing, but it is known that hypergraph partitioning has several advantages.  ...  We present a parallel software package for hypergraph (and sparse matrix) partitioning developed at Sandia National Labs. The algorithm is a variation on multilevel partitioning.  ...  Acknowledgments We thank Bruce Hendrickson for his advice and guidance in this project, and Robert Preis for his help developing a serial partitioner that preceded the present work.  ... 
doi:10.1109/ipdps.2006.1639359 dblp:conf/ipps/DevineBHBC06 fatcat:n62wwusbjje5rh57iwfvjr42eq
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