Filters








2,823 Hits in 12.3 sec

A high performance grid-web service framework for the identification of 'conserved sequence tags'

Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
2007 Future generations computer systems  
This work shows a tool for the identification and functional annotation of 'Conserved Sequence Tags' (CSTs) through cross-species genome comparisons, deployed on a Grid System Architecture, based on Web  ...  A new generation of grid infrastructure, where web services are building blocks, allow managent of a web services workflow.  ...  The problem of the identification of conserved sequence tags (CSTs) The annotation of sequence features in genome tracts is a fundamental task in genome analysis.  ... 
doi:10.1016/j.future.2006.07.012 fatcat:lk4we4mzvnbg3hlbu77lzyoto4

Exploring Microbial Genome Sequences to Identify Protein Families on the Grid

Yudong Sun, Anil Wipat, Matthew Pocock, Peter A. Lee, Keith Flanagan, James T. Worthington
2007 IEEE Transactions on Information Technology in Biomedicine  
large volume of genome sequences and to present the data in a computationally amenable format through a web service interface.  ...  This paper describes the development of a web service enabled, component based, architecture to support the large-scale comparative analysis of complete microbial genome sequences, and the subsequent identification  ...  For example, my Grid [18] is a service-based grid middleware framework to manage the complex process of life science research. my Grid supports data management, new discovery notification, and provenance  ... 
doi:10.1109/titb.2007.892913 pmid:17674626 fatcat:4snhelbkwvhbvcctcvwzxawy6a

XML-based approaches for the integration of heterogeneous bio-molecular data

Marco Mesiti, Ernesto Jiménez-Ruiz, Ismael Sanz, Rafael Berlanga-Llavori, Paolo Perlasca, Giorgio Valentini, David Manset
2009 BMC Bioinformatics  
The adoption of a few semantic-rich standard formats is urgent to achieve a seamless integration of the current biological resources.  ...  The today's public database infrastructure spans a very large collection of heterogeneous biological data, opening new opportunities for molecular biology, bio-medical and bioinformatics research, but  ...  Ernesto Jimenez-Ruiz was supported by the PhD Fellowship Program of the Generalitat Valenciana.  ... 
doi:10.1186/1471-2105-10-s12-s7 pmid:19828083 pmcid:PMC2762072 fatcat:n4tvxjx3ifadjbo4x7jbpx5zfa

XML-Based Approaches for the Integration of Heterogeneous Bio-Molecular Data [chapter]

Marco Mesiti, Ernesto Jiménez-Ruiz, Ismael Sanz, Rafael Berlanga-Llavori, Paolo Perlasca, Giorgio Valentini, David Manset
2011 Recent Advances in Biochemistry  
The adoption of a few semantic-rich standard formats is urgent to achieve a seamless integration of the current biological resources.  ...  Abstract Background: The today's public database infrastructure spans a very large collection of heterogeneous biological data, opening new opportunities for molecular biology, bio-medical and bioinformatics  ...  Ernesto Jimenez-Ruiz was supported by the PhD Fellowship Program of the Generalitat Valenciana.  ... 
doi:10.1201/b13131-13 fatcat:ytu7u4pcbzgbflpblij6x3wwky

Semantic Information Integration for Smart Grid Applications [chapter]

Yogesh Simmhan, Qunzhi Zhou, Viktor Prasanna
2011 Green IT: Technologies and Applications  
a rich ecosystem of Smart Grid applications from users, third party vendors, the utility and regulators.  ...  The Los Angeles Smart Grid Project aims to use informatics techniques to bring about a quantum leap in the way demand response load optimization is performed in utilities.  ...  Sharma and Khaled Salem from the LA DWP for discussions and contributions.  ... 
doi:10.1007/978-3-642-22179-8_19 fatcat:oz432avxmzdk5lys5ih64etwwm

Using crowdsourced imagery to detect cultural ecosystem services: a case study in South Wales, UK

Gianfranco Gliozzo, Nathalie Pettorelli, Mordechai (Muki) Haklay
2016 Ecology and Society  
The sequence of decisions and actions taken to share a digital picture of a given place includes the effort to travel to the place, the willingness to take a picture, the decision to geolocate the picture  ...  Using South Wales as a case study, we demonstrate how the proposed methodology can help identify key geographic features of high cultural value.  ...  Acknowledgments: We thank Artemis Skarlatidou for insightful suggestions on earlier versions of the text.  ... 
doi:10.5751/es-08436-210306 fatcat:k22mevjukncmddalqtyqz457c4

Planetary-Scale RFID Services in an Age of Uberveillance

Katina Michael, George Roussos, George Q. Huang, Arunabh Chattopadhyay, Rajit Gadh, B. S. Prabhu, Peter Chu
2010 Proceedings of the IEEE  
This paper outlines the vision for such a product service system, what kinds of smart applications we are likely to see in the future as a result, and the importance of data management capabilities in  ...  | Radio-frequency identification (RFID) has a great number of unfulfilled prospects.  ...  But when used for RFID service provision, RDBMSs may incur a very high implementation cost without offering a correspondingly high performance advantage.  ... 
doi:10.1109/jproc.2010.2050850 fatcat:j54lkivxyffcnkhrro3laknpfm

Validation of a hidden Markov model for the geolocation of Atlantic cod

Chang Liu, Geoffrey W. Cowles, Douglas R. Zemeckis, Steven X. Cadrin, Micah J. Dean
2017 Canadian Journal of Fisheries and Aquatic Sciences  
that constrains the horizontal movement of the fish.  ...  The HMM framework contains a likelihood model that compares tag-recorded environmental data (depth, temperature, tidal characteristics) with those derived from an oceanographic model and a behavior model  ...  Cod tagging research in the Spring Cod Conservation Zones was supported by the United States Fish and Wildlife Service through the Sportfish Restoration Act and the Massachusetts Marine Fisheries Institute  ... 
doi:10.1139/cjfas-2016-0376 fatcat:4phika6sgvd65pesksyqds3aby

EMBnet.journal 17 Suppl. B

EMBnet Journal
2012 EMBnet journal  
Today, however, we live in interesting times (as the saying goes), experiencing a revolution in which thousands of other genomes relating to a host of unicellular organisms, plants and non-human animals  ...  and mathematics into the melting pot in order to extract the wealth of information sequestered in the ever-growing pool of sequenced genomes.  ...  Essen, Germany http://www.rahmannlab.de/ We are developing a suite of scriptable tools for both small and large typical tasks arising in highthroughput sequencing projects.  ... 
doi:10.14806/ej.17.b.300 fatcat:hhetvxaitbebde4wefinkm7xnq

Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database

Florian Malard, Eugenia Wulff-Fuentes, Rex R Berendt, Guillaume Didier, Stephanie Olivier-Van Stichelen
2021 Database: The Journal of Biological Databases and Curation  
Highly conserved O-GlcNAcylation is a case example of one of the most recently discovered PTMs, investigated by a growing community.  ...  Post-translational modifications (PTMs) are ubiquitous and essential for protein function and signaling, motivating the need for sustainable benefit and open models of web databases.  ...  The back-end part of the O-GlcNAc Database was developed using Python (3.7.1) (27) and the high-level Python web framework Django (15) .  ... 
doi:10.1093/database/baab039 pmid:34279596 pmcid:PMC8288053 fatcat:s5p3bqsr7faj5gcy32exntb5rq

BIOINFORMATICS AND ITS APPLICATIONS IN PLANT BIOLOGY

Seung Yon Rhee, Julie Dickerson, Dong Xu
2006 Annual Review of Plant Biology  
As the amount of data grows exponentially, there is a parallel growth in the demand for tools and methods in data management, visualization, integration, analysis, modeling, and prediction.  ...  For personal use only.  ...  The public Web resource, Regulatory Sequence Analysis Tools (RSAT), performs sequence similarity searches and analyzes the noncoding sequences in the genomes (134) .  ... 
doi:10.1146/annurev.arplant.56.032604.144103 pmid:16669765 fatcat:rrci3w6dargpfiabbb4hrggq4y

EMBnet.journal 18 Suppl. A

EMBnet Journal
2012 EMBnet journal  
Protein Structure and Function Acknowledgments This work was supported by NFSR of Bulgaria project DVU 01/197.  ...  : a web resource for species assignment of high-throughput sequencing reads from metagenomics analysis M.  ...  Results The usage of the standard EGI/IGI resources and services, together with the high level services that IGI is providing on top of the grid, has provided the end users with the capability of carrying  ... 
doi:10.14806/ej.18.a.497 fatcat:2aexioifkfgfnipbo3btxqwvia

EOSC-hub D7.4 Second Thematic Service software release

Debora Testi
2020 Zenodo  
The integration happens at various levels: from the usage of cloud resources (IaaS, PaaS), to the usage of EOSC-hub common services (for example data and computing services), to the usage of EOSC-hub core  ...  services, like the authentication or the monitoring tools, to the publication of the services in the Service Catalogue or in the Marketplace.  ...  J Grid Computing 10, 743-767 (2012). • Schot, G. & Bonvin, A. M. J. J. Performance of the WeNMR CS-Rosetta3 web server in CASD-NMR.  ... 
doi:10.5281/zenodo.5033292 fatcat:2aljt4o26bb7xpkxixswzqu5lm

Poster Presentations

EMBnet Journal
2010 EMBnet journal  
Having data available in BioPAX format makes easier for the databases to share information and provide a consistent format to facilitate integration of data from multiple sources.  ...  among different databases available on the Web (http://www.biopax.org).  ...  Acknowledgments We acknowledge the support of Dirección General de Servicios de Cómputo Académico, UNAM for the expansion of the national node, as well as to Jérôme Verleyen and Roberto Rodriguez from  ... 
doi:10.14806/ej.16.a.154 fatcat:gijtt5n3njhzfbfvp7zc7qaitq

Comparative analyzes of technological tools between industry 4.0 and smart cities approaches: the new society ecosystem

Wilson Gasparotto Storolli, Ieda Kanashiro Makiya, Francisco Ignacio Giocondo César
2019 Independent Journal of Management & Production  
the same in the Smart Cities development.This article aims to relate technological tools of I.4.0 and the dimensions of "Smart Cities", based on analytical framework for better understanding the emergence  ...  Consequently, it's important to pay attention to the development of sustainable urban planning and its role in urban management issues is an objective that requires a new approach.On the other hand, Industry  ...  Smart Cities use data e and make them available for scientific analysis and planning with a view to fostering the urban performance for the city organization itself, for the residents and for the business  ... 
doi:10.14807/ijmp.v10i3.792 fatcat:mstfmhpxibgexd4h3pgpxoohuy
« Previous Showing results 1 — 15 out of 2,823 results