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A framework to assess the quality and impact of bioinformatics training across ELIXIR

Kim T. Gurwitz, Prakash Singh Gaur, Louisa J. Bellis, Lee Larcombe, Eva Alloza, Balint Laszlo Balint, Alexander Botzki, Jure Dimec, Victoria Dominguez del Angel, Pedro L. Fernandes, Eija Korpelainen, Roland Krause (+19 others)
<span title="2020-07-23">2020</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ch57atmlprauhhbqdf7x4ytejm" style="color: black;">PLoS Computational Biology</a> </i> &nbsp;
with the ELIXIR Training Coordinators Group, has implemented an assessment strategy to measure quality and impact of its entire training portfolio.  ...  In an evidence-based approach for strengthening bioinformatics training programmes across Europe, the ELIXIR Training Platform, led by the ELIXIR EXCELERATE Quality and Impact Assessment Subtask in collaboration  ...  Acknowledgments The authors acknowledge the ELIXIR Node Training Coordinators Group: ELIXIR-NL, Celia W. G. van  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1007976">doi:10.1371/journal.pcbi.1007976</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32702016">pmid:32702016</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/q7vggauzdnderagl7rsrhojmku">fatcat:q7vggauzdnderagl7rsrhojmku</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200724204109/https://journals.plos.org/ploscompbiol/article/file?id=10.1371%2Fjournal.pcbi.1007976&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9e/a5/9ea55e5e057f155dc23fd0c7d8ffa5ded12400ea.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1007976"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a>

11.1 Deliver The Identified Evaluation Systems And Good Practice Guidelines For Training. Deliver A Tess Platform And Identify E-Learning Solutions

Gabriella Rustici, Kim Gurwitz, Bellis Louisa, ELIXIR Training Community
<span title="2018-10-09">2018</span> <i title="Zenodo"> Zenodo </i> &nbsp;
"Deliver the identified evaluation systems and good practice guidelines for training" belongs to Subtask 11.1 of the WP11 Assessing training quality¨ good practice and impact .  ...  It resulted in a harmonized mechanism, and its companion good practice guidelines, that allow to capture and report on ELIXIR training efforts and their impact, across Nodes.  ...  "Deliver the identified evaluation systems and good practice guidelines for training" belongs to Subtask 11.1.1: Assessing training quality, good practice and impact .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1453020">doi:10.5281/zenodo.1453020</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cqcpoyz26ngcdh646mc2nwewyi">fatcat:cqcpoyz26ngcdh646mc2nwewyi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200309122548/https://zenodo.org/record/1453021/files/D11.1_Deliverable-report_Deliver%20the%20identified%20evaluation%20systems%20and%20good%20practice%20guidelines%20for%20training.%20Deliver%20a%20TeSS%20platform%20and%20identify%20e-learning%20solutions_EXCELERATE.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2e/31/2e310613afb83754d3971c47d98dcef90e924ca9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1453020"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR

L. Larcombe, R. Hendricusdottir, T.K. Attwood, F. Bacall, N. Beard, L.J. Bellis, W.B. Dunn, J.M. Hancock, A. Nenadic, C. Orengo, B. Overduin, S-A Sansone (+6 others)
<span title="2017-06-21">2017</span> <i title="F1000 Research, Ltd."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
Since its foundation in 2014, ELIXIR-UK has played a leading role in training both within the UK and in the ELIXIR Training Platform, which coordinates and delivers training across all ELIXIR members.  ...  As part of this work it acts as a conduit for nationally-important bioinformatics training resources to promote their activities to the ELIXIR community.  ...  Training impact and quality assessment The training impact and quality assessment work aims to develop a framework for capturing and reporting on the impact of the ELIXIR training programme as a whole,  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.11837.1">doi:10.12688/f1000research.11837.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28781748">pmid:28781748</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5521157/">pmcid:PMC5521157</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ilajvsaxsvcgtaqrkhjvslxsim">fatcat:ilajvsaxsvcgtaqrkhjvslxsim</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190221040658/http://pdfs.semanticscholar.org/2e68/72827aa105b32d540501746748cc8811ac07.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2e/68/2e6872827aa105b32d540501746748cc8811ac07.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.11837.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5521157" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Report on training provided across the ELIXIR community [article]

Terri Attwood, Daniel Ben-Avraham, Niall Beard, Victoria Dominguez del Angel, Pedro Fernandes, Kim Gurwitz, Pascal Kahlem, Eija Korpelainen, Brane Leskošek, Jessica Lindvall, Sarah Morgan, Stale Nygard (+7 others)
<span title="2019-08-23">2019</span> <i title="Zenodo"> Zenodo </i> &nbsp;
of each of the ELIXIR Nodes, that leads the implementation of the ELIXIR training strategy across Europe.  ...  The overall aims of the WP11 ELIXIR-EXCELERATE Training Programme were to: (i) build a sustainable training infrastructure for the ELIXIR's community, encompassing both technical infrastructure and training  ...  and the use of bioinformatics tools and resources; • define best practices, guidelines and impact/quality metrics that ELIXIR Nodes, as well as institutions outside of ELIXIR, can adopt to develop, deliver  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3375427">doi:10.5281/zenodo.3375427</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/46wcktdh55e45mbxqpzu2lqihi">fatcat:46wcktdh55e45mbxqpzu2lqihi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220130111430/https://zenodo.org/record/3375428/files/EXCELERATE%20D11.3%20Final.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f9/27/f9273bf2b30616b3b44f6ad0d6df55de3109e9ea.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3375427"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

Data Stewardship Training Resources in ELIXIR [article]

Celia Van Gelder
<span title="2019-04-17">2019</span> <i title="Figshare"> Figshare </i> &nbsp;
These are the slides of my presentation "Data Stewardship training resources in ELIXIR".  ...  They were presented on April 17, 2019, in the Hague at the Open Science and Research Data Management Train-the-Trainer Bootcamp, https://dans.knaw.nl/nl/actueel/open-science-and-research-data-management-train-the-trainer-bootcamp  ...  • Build a sustainable training infrastructure -supported and adopted by all member states • Deliver a coherent, high-quality and impactful ELIXIR training program • addressing training gaps ELIXIR  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.8005844">doi:10.6084/m9.figshare.8005844</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cvuhkgf3ivbzfoeqf4k7bo3my4">fatcat:cvuhkgf3ivbzfoeqf4k7bo3my4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200226084712/https://s3-eu-west-1.amazonaws.com/pfigshare-u-files/14909783/DANSTtTRDMBootcampApril172019CeliavanGelder.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ca/ac/caac7a064c5987a728984eee488b4216b81d3de3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.8005844"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> figshare.com </button> </a>

The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training

Sarah L Morgan, Patricia M Palagi, Pedro L Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K Attwood, Allegra Via
<span title="2017-08-24">2017</span> <i title="F1000 Research, Ltd."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
One of the main goals of the ELIXIR-EXCELERATE project from the European Union's Horizon 2020 programme is to support a pan-European training programme to increase bioinformatics capacity and competency  ...  To this end, a Train-the-Trainer (TtT) programme has been developed by the TtT subtask of EXCELERATE's Training Platform, to try to expose bioinformatics instructors to aspects of pedagogy and evidence-based  ...  One of ELIXIR-EXCELERATE's main goals is to help ELIXIR support a pan-European training programme to increase bioinformatics capacity and competency.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.12332.1">doi:10.12688/f1000research.12332.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28928938">pmid:28928938</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5596339/">pmcid:PMC5596339</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pyiibcvy7fbunpdkdryzzqihfu">fatcat:pyiibcvy7fbunpdkdryzzqihfu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190309110834/http://pdfs.semanticscholar.org/f859/5d06d727f7e41c1d5baa2e86551e04d202f1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f8/59/f8595d06d727f7e41c1d5baa2e86551e04d202f1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.12332.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596339" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

ELIXIR-Training-2018-ELIXIR-CZ-Conference

Celia Van Gelder, Patricia M. Palagi, Gabriella Rustici, Pascal Kahlem
<span title="2018-11-24">2018</span> <i title="Figshare"> Figshare </i> &nbsp;
To assess and monitor the quality and impact of ELIXIR courses, the Training Platform has defined a core set of KPIs, which is now gradually being adopted throughout the Nodes.  ...  In this way the ELIXIR Training Platform facilitates provision and delivery of high quality training in Europe, which helps to further advance research in the life sciences  ...  , Skills and Abilities' • collect feedback and determine the quality and impact of training activities • build training capacity through the Train-the-Trainer program • The training Toolkit is available  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.7378283.v1">doi:10.6084/m9.figshare.7378283.v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mpohwwuozjg27jfgqvjbxulgvy">fatcat:mpohwwuozjg27jfgqvjbxulgvy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200228145226/https://s3-eu-west-1.amazonaws.com/pfigshare-u-files/13646498/ELIXIRTraining2018ELIXIRCZConference.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/cc/bc/ccbc224f6b40b1d64a84f6a57ed611dbc6773451.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.7378283.v1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> figshare.com </button> </a>

Making European performance and impact assessment frameworks glocal

Ana M.P. Melo, Sofia Oliveira, Jorge S. Oliveira, Corinne S. Martin, Ricardo B. Leite
<span title="2022-03-04">2022</span> <i title="F1000 Research Ltd"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
During this period, performance and impact indicators were collected and analysed under the light of international guidelines for assessing the performance and impact of European research infrastructures  ...  The exercise shared herein showed that these frameworks can be adopted by national RIs, with the necessary adaptations, namely to reflect the national landscape and specificity of activities, and can be  ...  Finally, out of the 58 indicators compiled by the OECD framework, 32 were monitored by "Building BioData.pt", 18 belonging to Scientific Impact and Training and Education, emphasizing the importance of  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.108804.1">doi:10.12688/f1000research.108804.1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dgnftlukpjdpriqdb5skorcrka">fatcat:dgnftlukpjdpriqdb5skorcrka</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220421215119/https://f1000researchdata.s3.amazonaws.com/manuscripts/120233/1187174d-82b0-4f84-8d2d-6c6b6d3b7f4e_108804_-_ana_melo.pdf?doi=10.12688/f1000research.108804.1&amp;numberOfBrowsableCollections=45&amp;numberOfBrowsableInstitutionalCollections=4&amp;numberOfBrowsableGateways=38" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d6/e8/d6e80c860f5393d1aa6395a852fb63c1835b3a2b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.108804.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Identifying ELIXIR Core Data Resources

Christine Durinx, Jo McEntyre, Ron Appel, Rolf Apweiler, Mary Barlow, Niklas Blomberg, Chuck Cook, Elisabeth Gasteiger, Jee-Hyub Kim, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger (+2 others)
<span title="2017-03-09">2017</span> <i title="F1000 Research, Ltd."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
The core mission of ELIXIR is to build a stable and sustainable infrastructure for biological information across Europe.  ...  At the heart of this are the data resources, tools and services that ELIXIR offers to the life-sciences community, providing stable and sustainable access to biological data.  ...  Acknowledgements We thank all the colleagues who have contributed over many years to arriving at this position and state of clarity since the ELIXIR Preparatory Phase.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.9656.2">doi:10.12688/f1000research.9656.2</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27803796">pmid:27803796</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5070591/">pmcid:PMC5070591</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/irmr4gvvtna2dpsa7ncssff7au">fatcat:irmr4gvvtna2dpsa7ncssff7au</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180722005020/https://f1000researchdata.s3.amazonaws.com/manuscripts/11872/277de35c-6c86-444d-9ebc-abea3938d211_9656_-_Jo_McEntyre_V2.pdf?doi=10.12688/f1000research.9656.2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ea/cb/eacb5849a72e052e69ba2858c39d7f85ce9aed4e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.9656.2"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5070591" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Identifying ELIXIR Core Data Resources

Christine Durinx, Jo McEntyre, Ron Appel, Rolf Apweiler, Mary Barlow, Niklas Blomberg, Chuck Cook, Elisabeth Gasteiger, Jee-Hyub Kim, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger (+2 others)
<span title="2016-09-30">2016</span> <i title="F1000 Research, Ltd."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
The core mission of ELIXIR is to build a stable and sustainable infrastructure for biological information across Europe.  ...  At the heart of this are the data resources, tools and services that ELIXIR offers to the life-sciences community, providing stable and sustainable access to biological data.  ...  Acknowledgements We thank all the colleagues who have contributed over many years to arriving at this position and state of clarity since the ELIXIR Preparatory Phase.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.9656.1">doi:10.12688/f1000research.9656.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27803796">pmid:27803796</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5070591/">pmcid:PMC5070591</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6nxebcvvfjcibowlvx3vo7357m">fatcat:6nxebcvvfjcibowlvx3vo7357m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180722144459/https://f1000researchdata.s3.amazonaws.com/manuscripts/10405/f0975b93-c135-4731-805a-3b2f93a3b2c1_9656_-_Jo_McEntyre.pdf?doi=10.12688/f1000research.9656.1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/19/ea/19eabfec620c0203a0108dc9918d0710c40f15aa.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.9656.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5070591" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

ELIXIR-EXCELERATE D2.4: Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results

Salvador Capella-Gutierrez, Juergen Haas, Josep Ll. Gelpí, José Maria Fernández
<span title="2019-08-07">2019</span> <i title="Zenodo"> Zenodo </i> &nbsp;
D2.1: Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments1, D2.2: A report on the coordination with WP1 on the incorporation of  ...  The objective of Deliverable 2.4 is to report on the current status of OpenEBench as the ELIXIR Benchmarking platform considering all work carried out in the H2020 ELIXIR-EXCELERATE project.  ...  Within OpenEBench we have started, FAIRsoft, an initial effort to assess the quality of research software using a FAIR-like framework.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3362115">doi:10.5281/zenodo.3362115</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qfdw2okaajbvrmpfsgydrljp6m">fatcat:qfdw2okaajbvrmpfsgydrljp6m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200229025354/https://zenodo.org/record/3362116/files/ELIXIR-EXCELERATE%20Deliverable%20D2.4%20Final%20report%20on%20the%20impact%20of%20ELIXIR%20infrastructure%20for%20hosting%20scientific%20benchmarking%20and%20technical%20monitoring%20results.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/31/bb/31bb62c62fb34e16ae9fd628d8d14423b51625b5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3362115"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

ELIXIR-EXCELERATE D13.4 The impact of the Innovation and SME Programme on industry users

Katharina Lauer, Andrew Smith
<span title="2019-08-01">2019</span> <i title="Zenodo"> Zenodo </i> &nbsp;
with key industry stakeholders and initiatives 4) Ensure effective communication between industry and ELIXIR 5) Support the bioinformatics training needs of industry To deliver Objective 2 - Enable Open  ...  The overall assessment is that the Innovation and SME Forum is considered a flagship activity of ELIXIR. Industry attending the events find the forum incredibly useful, as do ELIXIR Nodes.  ...  All surveys carried out in the ELIXIR industry programme are aligned with the ELIXIR Training -Quality and Impact Assessment and adapted to fit the framework of the Innovation and SME Forum.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3357733">doi:10.5281/zenodo.3357733</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fbqbawlwx5f7valcnpl5dbbnxe">fatcat:fbqbawlwx5f7valcnpl5dbbnxe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201225122718/https://zenodo.org/record/3357734/files/ELIXIR-EXCELERATE%20D13.4%20The%20impact%20of%20the%20Innovation%20and%20SME%20Programme%20on%20industry%20users.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/18/60/1860f0da889d68fd19432988d00a4f181753471e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3357733"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

BioData.pt Annual Report 2020 [article]

Ana M. P. Melo, Daniel Faria, Marta Contreiras Silva, Rafael Santos
<span title="2021-03-02">2021</span> <i title="figshare"> figshare.com </i> &nbsp;
BioData.pt | ELIXIR PT is the distributed research infrastructure for biological data, operating the Portuguese node of ELIXIR. This is the annual report of 2020.  ...  Have a look in our achievements and leave us your comments and suggestions.www.biodata.pt  ...  In the beginning of 2020, BioData.pt has raised the training room at IGC to a premium quality level.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.14141606.v1">doi:10.6084/m9.figshare.14141606.v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/d72l7t3g3ncs3drzw3rmqz6une">fatcat:d72l7t3g3ncs3drzw3rmqz6une</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210325003617/https://s3-eu-west-1.amazonaws.com/pfigshare-u-files/26666276/AnnualReport_2020_A4final.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/cb/21/cb21e3ae65c224dbc83d0007c3cd6858e3f4a2b2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.14141606.v1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> figshare.com </button> </a>

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

Christine Orengo, Sameer Velankar, Shoshana Wodak, Vincent Zoete, Alexandre M.J.J. Bonvin, Arne Elofsson, K. Anton Feenstra, Dietland L. Gerloff, Thomas Hamelryck, John M. Hancock, Manuela Helmer-Citterich, Adam Hospital (+11 others)
<span title="2020-04-22">2020</span> <i title="F1000 Research Ltd"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
In particular, we present recent activities and future plans to consolidate an ELIXIR 3D-Bioinfo Community in structural bioinformatics and propose means to develop better links across the community.  ...  Here we highlight the major European contributions to the field of structural bioinformatics, the most pressing challenges remaining and how Europe-wide interactions, enabled by ELIXIR and its platforms  ...  The first section of this article ("Major European contributions in structural bioinformatics") describes the historical impact of European research groups in the field of structural bioinformatics.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.20559.1">doi:10.12688/f1000research.20559.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32566135">pmid:32566135</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7284151/">pmcid:PMC7284151</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4um6orxypbcfxfq6uh7ue56fsm">fatcat:4um6orxypbcfxfq6uh7ue56fsm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201107003345/https://curis.ku.dk/ws/files/244236083/A_community_proposal_to_integrate_structural_bioinformatics_activities_in_ELIXIR.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5f/ca/5fca0a48f17eba248a66cc3e1e7a9789a95b553e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.20559.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284151" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Report: Workbench Integration Enabler: Implementation & Evaluation Of Impact

Herve Menager, Jon Ison, Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Hedi Peterson
<span title="2018-07-26">2018</span> <i title="Zenodo"> Zenodo </i> &nbsp;
In the context of a generic registry for bioinformatics software, such as bio.tools, Galaxy instances constitute a major source of valuable content (online services and underlying tools).  ...  The objective of EXCELERATE Deliverable 1.6 is to integrate the ELIXIR Tools and Data Services Registry (bio.tools) with workbench environments such as Galaxy, respecting the general trend towards the  ...  Firstly, it will review the existing service quality and performance metrics and assess their usefulness in the context of a registry.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1321853">doi:10.5281/zenodo.1321853</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lw5ybygmqjftxmbkbqa364szta">fatcat:lw5ybygmqjftxmbkbqa364szta</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201226044609/https://zenodo.org/record/1321853/files/D1.6.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a6/ac/a6acce8155fc390d768f78499a0f080b3581c9fe.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1321853"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>
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