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Unlocking biodiversity data: Prioritization and filling the gaps in biodiversity observation data in Europe

Florian T. Wetzel, Heather C. Bingham, Quentin Groom, Peter Haase, Urmas Kõljalg, Michael Kuhlmann, Corinne S. Martin, Lyubomir Penev, Tim Robertson, Hannu Saarenmaa, Dirk S. Schmeller, Stefan Stoll (+2 others)
2018 Biological Conservation  
A B S T R A C T Large quantities of biodiversity data are required to assess the current status of species, to identify drivers of population and distributional change, and to predict changes to biodiversity  ...  We suggest strategies, tools and frameworks to continue to fill these gaps, in addition to producing data suitable for generating Essential Biodiversity Variables (EBVs). Our review of  ...  Acknowledgements This paper was supported by the EU BON project which is a 7th Framework Programme funded by the European Union under Contract No. 308454.  ... 
doi:10.1016/j.biocon.2017.12.024 fatcat:d7omosiju5hrhckk3fobswaz5y

NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI)

Frank Oliver Glöckner, Michael Diepenbroek, Janine Felden, Anton Güntsch, Jens Stoye, Jörg Overmann, Klaus Wimmers, Ivaylo Kostadinov, Ramin Yahyapour, Wolfgang Müller, Uwe Scholz, Dagmar Triebel (+6 others)
2020 Zenodo  
holders and take care of research data management requests related to biodiversity data.  ...  To foster access to interoperable data, NFDI4BioDiversity focuses on the following six objectives: 1) Promoting research data management as an integral part of biodiversity research, 2) Enabling FAIRness  ...  In Task Area 3 we will set up measures to evaluate and prioritise repositories where quality assurance ranging from data provenance to data integrity for long-term archival is implemented.  ... 
doi:10.5281/zenodo.3943644 fatcat:lltfs5w6y5hn3ixe5bw2sitoa4

Unifying European Biodiversity Informatics (BioUnify)

Dimitrios Koureas, Alex Hardisty, Rutger Vos, Donat Agosti, Christos Arvanitidis, Peter Bogatencov, Pier Luigi Buttigieg, Yde de Jong, Ferenc Horvath, Georgios Gkoutos, Quentin Groom, Tomas Kliment (+11 others)
2016 Research Ideas and Outcomes  
Short-term storage and long-term archival solutions for the heterogeneous and largevolume data produced across the different biodiversity disciplines is already a major problem.  ...  biodiversity data is the cornerstone for effectively improving biodiversity informatics uptake in the long-term.  ... 
doi:10.3897/rio.2.e7787 fatcat:s3xhu4h2t5fpvbvbawycgnnobu

EOSC-hub D7.3 First report on Thematic Service exploitation

Debora Testi
2020 Zenodo  
This document provides an update on the development and integration status of the thematic services part of WP7 activities.  ...  It also describes the target users and a first report on the usage of the services.  ...  The DARIAH Repository is a service based on the Common Data Storage ARchitecture (CDSTAR), providing digital long-term archive for human and cultural-scientific research data.  ... 
doi:10.5281/zenodo.5033270 fatcat:f46dnr6dfbayxocf2ea52jhfme

A comparison of research data management platforms: architecture, flexible metadata and interoperability

Ricardo Carvalho Amorim, João Aguiar Castro, João Rocha da Silva, Cristina Ribeiro
2016 Universal Access in the Information Society  
Adopting a pragmatic view on data management, the paper focuses on solutions that can be adopted in the longtail of science, where investments in tools and manpower are modest.  ...  First, a broad set of data management platforms is presented-some designed for institutional repositories and digital libraries-to select a short list of the more promising ones for data management.  ...  João Rocha da Silva is also supported by research grant SFRH/BD/77092/2011, provided by the Portuguese funding agency, Fundação para a Ciência e a Tecnologia (FCT).  ... 
doi:10.1007/s10209-016-0475-y fatcat:kxdkw2gr7vebhasbdd6b3ibhty

The Bari Manifesto: An interoperability framework for essential biodiversity variables

Alex R. Hardisty, William K. Michener, Donat Agosti, Enrique Alonso García, Lucy Bastin, Lee Belbin, Anne Bowser, Pier Luigi Buttigieg, Dora A.L. Canhos, Willi Egloff, Renato De Giovanni, Rui Figueira (+14 others)
2019 Ecological Informatics  
for documenting trends in biodiversity.  ...  Here, we encapsulate ten principles for the current best practice in EBV-focused biodiversity informatics as 'The Bari Manifesto', serving as implementation guidelines for data and research infrastructure  ...  Acknowledgments The work reported in this article has been performed by the GLOBal  ... 
doi:10.1016/j.ecoinf.2018.11.003 fatcat:ghhxpbdjz5dkhbt2e4u3mjzjsm

Swedish LifeWatch ─ a biodiversity infrastructure integrating and reusing data from citizen science, monitoring and research

Ulf Gärdenfors, Mari Jönsson, Matthias Obst, Anna Maria Wremp, Oskar Kindvall, Johan Nilsson
2014 Human Computation  
To that end, as well as for other complicated and data-intensive biodiversity research purposes, the concept of LifeWatch has emerged.  ...  The idea of LifeWatch is to construct e-infrastructure and virtual laboratories by integrating large data sources, computational capacities, and tools for analysis and modelling in an open, serviceoriented  ...  This has been a success factor in terms of generating large amounts of data.  ... 
doi:10.15346/hc.v1i2.6 dblp:journals/hc/GardenforsJOWKN14 fatcat:plgqvpaagbafpkdjewxnt2cfme

D4.4 SHERPA online repository development documentation and user manual

Borja Espejo Garcia, Spyros Fountas, Sofia Mouseti, Hercules Panoutsopoulos
2020 Zenodo  
The purpose of the SHERPA repository is to enable a broad range of potential users to access information and content pointing to: (i) rural topics addressed and investigated in the context of the Multi-Actor  ...  The work documented in this deliverable relates to the development and deployment of the initial version of the SHERPA online repository.  ...  In the first version of the repository, the rural topics to which research projects (and project-related information) are linked are the 'Long-term vision for rural areas' and 'Biodiversity'.  ... 
doi:10.5281/zenodo.5337167 fatcat:puvmvcdlqff3jbn3anyll2dexy

Establishing the Foundation for the Global Observing System for Marine Life

Erin V. Satterthwaite, Erin V. Satterthwaite, Erin V. Satterthwaite, Nicholas J. Bax, Nicholas J. Bax, Patricia Miloslavich, Patricia Miloslavich, Lavenia Ratnarajah, Lavenia Ratnarajah, Gabrielle Canonico, Daniel Dunn, Samantha E. Simmons (+36 others)
2021 Frontiers in Marine Science  
Of 371 survey respondents, 203 active, long-term (>5 years) observing programs systematically sampled marine life.  ...  Two-thirds of all observing programs offered accessible data, but methods and conditions for access were highly variable.  ...  All authors supported the conceptualization, data collection/curation, and/or data analyses for this research.  ... 
doi:10.3389/fmars.2021.737416 doaj:8cc4da33b52d40b8bf1cdcfc70036c04 fatcat:hqe6xs5mfrghzldka3noq7zyaq

Effective Biodiversity Monitoring Needs a Culture of Integration

Hjalmar S. Kühl, Diana E. Bowler, Lukas Bösch, Helge Bruelheide, Jens Dauber, David. Eichenberg, Nico Eisenhauer, Néstor Fernández, Carlos A. Guerra, Klaus Henle, Ilka Herbinger, Nick J.B. Isaac (+13 others)
2020 One Earth  
The icons used in Figure 2 and Table 2 were downloaded from https:// We credit the following for making their graphics available on the noun project: Aaron K.  ...  Eventually, all of this will increase long-term stability of an integrated biodiversity monitoring approach compared with a stand-alone program.  ...  BENEFITS OF INTEGRATION Network integration will likely increase long-term continuity of biodiversity monitoring.  ... 
doi:10.1016/j.oneear.2020.09.010 fatcat:st3wbsathnf2hpkkcgzck5eb5m

D4.4/D19 Strategy and priorities for delivering information services to end users

2021 Zenodo  
research and innovation in the areas of biodiversity, agriculture and forestry.  ...  A brief overview of the current global context concerning data on biodiversity, the achievements and current gaps of the three networks's documentation activities is provided.  ...  They must align technically with the FAIR principles and be recognized as trusted, long term supported and well governed data repositories that enable uptake of their data by different types of portals  ... 
doi:10.5281/zenodo.5141212 fatcat:siiudbctcjdufmrzxo53eov67m

Framing Cutting-Edge Integrative Deep-Sea Biodiversity Monitoring via Environmental DNA and Optoacoustic Augmented Infrastructures

Sergio Stefanni, Luca Mirimin, David Stanković, Damianos Chatzievangelou, Lucia Bongiorni, Simone Marini, Maria Vittoria Modica, Elisabetta Manea, Federico Bonofiglio, Joaquin del Rio Fernandez, Neven Cukrov, Ana Gavrilović (+2 others)
2022 Frontiers in Marine Science  
Furthermore, we provide a critical overview of four areas of development: (i) Integrating eDNA with optoacoustic imaging; (ii) Development of eDNA repositories and cross-linking with other biodiversity  ...  Indeed, the analysis of eDNA in conjunction with the collection of multidisciplinary optoacoustic and environmental data, can provide a more comprehensive monitoring of deep-sea biodiversity.  ...  ACKNOWLEDGMENTS JA, JR, and DC are members of the Research Unit Tecnoterra (ICM-CSIC/UPC), providing the conceptual framework for technological development applied to ecosystem remote, autonomous, and  ... 
doi:10.3389/fmars.2021.797140 fatcat:i4f5gew2bjbdhkhhaz5p7svrau

Key Issues for Realizing Open Ecoacoustic Monitoring in Australia

Kellie Vella, Tara Capel, Ashleigh Gonzalez, Anthony Truskinger, Susan Fuller, Paul Roe
2022 Frontiers in Ecology and Evolution  
This research contributes directly to the development of an open ecoacoustics platform to enable the sharing of data, analyses, and tools for environmental conservation.  ...  key trends and challenges in their use of ecoacoustics data.  ...  University, Department of Biodiversity, Conservation and Attraction (Western Australia), Department of Primary Industries, Parks, Water and Environment (Tasmania), Griffith University, James Cook University  ... 
doi:10.3389/fevo.2021.809576 fatcat:b4ul24p2ibgo5keyothhm6636i

How to Integrate Experimental Research Approaches in Ecological and Environmental Studies: AnaEE France as an Example

Jean Clobert, André Chanzy, Jean-François Le Galliard, Abad Chabbi, Lucile Greiveldinger, Thierry Caquet, Michel Loreau, Christian Mougin, Christian Pichot, Jacques Roy, Laurent Saint-André
2018 Frontiers in Ecology and Evolution  
In order to compare data by using a common framework, and to use comparable measures and standards across platforms, we anticipated the need for a common set of analytical platforms and a common procedure  ...  Important initiatives that span multiple research questions exist and include for example the Silwood Park Ecotron dedicated to biodiversity research (Lawton, 1996) , the Cedar Creek long-term experiment  ...  Conflict of Interest Statement: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest  ... 
doi:10.3389/fevo.2018.00043 fatcat:c6ih36cr4bagba6xfx7wuuahji

EcoBank: A flexible database platform for sharing ecological data

Hyun Woo Kim, Sungsoo Yoon, Mokyoung Kim, Manseok Shin, Heenam Yoon, Kidong Kim
2021 Biodiversity Data Journal  
Ecologists have produced a massive amount of data to cope with the crisis.  ...  However, in Korea, ecological datasets produced by different research institutes for different purposes have not been integrated or serviced due to poorly designed information infrastructure.  ...  As a principal investigator of EcoBank development project and the official corresponding author, Kidong Kim formulated and coordinated the overall research.  ... 
doi:10.3897/bdj.9.e61866 pmid:33654452 pmcid:PMC7904746 fatcat:kppn65pbgra3llqk4b3dqp2pmu
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