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A workflow for differentially-private graph synthesis

Davide Proserpio, Sharon Goldberg, Frank McSherry
<span title="">2012</span> <i title="ACM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vqn5fclxkzdf3oyw7vap5hs5vi" style="color: black;">Proceedings of the 2012 ACM workshop on Workshop on online social networks - WOSN &#39;12</a> </i> &nbsp;
We present a new workflow for differentially-private publication of graph topologies.  ...  First, we produce differentiallyprivate measurements of interesting graph statistics using our new version of the PINQ programming language, Weighted PINQ, which is based on a generalization of differential  ...  FUTURE WORK In this short paper, we provided an overview of our new workflow for differentially-private graph synthesis, and presented initial results of our experiments to generate synthetic graphs that  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2342549.2342553">doi:10.1145/2342549.2342553</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/wosn/ProserpioGM12.html">dblp:conf/wosn/ProserpioGM12</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/twd5petk5bbbhkvpi66j2f2c54">fatcat:twd5petk5bbbhkvpi66j2f2c54</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170921235859/http://cs-people.bu.edu/dproserp/papers/wosn03-proserpio.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d2/ca/d2cad9bb7da4c47f31a9e7d77142e3fc955fdd45.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2342549.2342553"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

Calibrating data to sensitivity in private data analysis

Davide Proserpio, Sharon Goldberg, Frank McSherry
<span title="2014-04-01">2014</span> <i title="VLDB Endowment"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p6rqwwpkkjbcldejepcehaalby" style="color: black;">Proceedings of the VLDB Endowment</a> </i> &nbsp;
We present an approach to differentially private computation in which one does not scale up the magnitude of noise for challenging queries, but rather scales down the contributions of challenging records  ...  Using a few simple operators (including a non-uniformly scaling Join operator) wPINQ can reproduce (and improve) several recent results on graph analysis and introduce new generalizations (e.g., counting  ...  We thank the WOSN'12 reviewers, the VLDB'14 reviewers, George Kollios, Robert Lychev and Evimaria Terzi for comments on this draft.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14778/2732296.2732300">doi:10.14778/2732296.2732300</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bxs2whvkfnda7oa23tyfvlbj6m">fatcat:bxs2whvkfnda7oa23tyfvlbj6m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170519123957/http://www-bcf.usc.edu:80/~proserpi/papers/DPvldb.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/aa/52/aa52ac559f9bdc6794687d13764a5ca33e1b6d90.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14778/2732296.2732300"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Calibrating Data to Sensitivity in Private Data Analysis [article]

Davide Proserpio, Sharon Goldberg, Frank McSherry
<span title="2014-05-04">2014</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We present an approach to differentially private computation in which one does not scale up the magnitude of noise for challenging queries, but rather scales down the contributions of challenging records  ...  Using a few simple operators (including a non-uniformly scaling Join operator) wPINQ can reproduce (and improve) several recent results on graph analysis and introduce new generalizations (e.g., counting  ...  We thank the WOSN'12 reviewers, the VLDB'14 reviewers, George Kollios, Robert Lychev and Evimaria Terzi for comments on this draft, and Ran Canetti and Leonid Reyzin for helpful discussions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1203.3453v5">arXiv:1203.3453v5</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/iutuioww65hfraqlngo3fahizm">fatcat:iutuioww65hfraqlngo3fahizm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191012215431/https://arxiv.org/pdf/1203.3453v5.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1f/d3/1fd32f22d4fa958e08557900826de785cc7f4d66.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1203.3453v5" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Publishing Attributed Social Graphs with Formal Privacy Guarantees

Zach Jorgensen, Ting Yu, Graham Cormode
<span title="">2016</span> <i title="ACM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vxrc3vebzzachiwy3nopwi3h5u" style="color: black;">Proceedings of the 2016 International Conference on Management of Data - SIGMOD &#39;16</a> </i> &nbsp;
This provides a complete workflow, where the input is a sensitive graph, and the output is a realistic synthetic graph.  ...  We introduce an approach to release such graphs under the strong guarantee of differential privacy.  ...  We integrate this new model into AGM and outline the end-to-end workflow for generating differentially private synthetic graphs.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2882903.2915215">doi:10.1145/2882903.2915215</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/sigmod/JorgensenYC16.html">dblp:conf/sigmod/JorgensenYC16</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nsdou65txzethhmuykob7yp35e">fatcat:nsdou65txzethhmuykob7yp35e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170923013731/http://wrap.warwick.ac.uk/81151/2/WRAP_1271140-cs-190816-main.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3b/4e/3b4e451aec6dcc7118d3dd09ca1edb4f274d949f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2882903.2915215"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

Scaling up workflow-based applications

Scott Callaghan, Ewa Deelman, Dan Gunter, Gideon Juve, Philip Maechling, Christopher Brooks, Karan Vahi, Kevin Milner, Robert Graves, Edward Field, David Okaya, Thomas Jordan
<span title="">2010</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p6ovb2qpkfenhmb7mcksobrcxq" style="color: black;">Journal of computer and system sciences (Print)</a> </i> &nbsp;
Scientific applications, often expressed as workflows are making use of large-scale national cyberinfrastructure to explore the behavior of systems, search for phenomena in large-scale data, and to conduct  ...  The scientific goal of the SCEC CyberShake project is to calculate probabilistic seismic hazard curves for sites in Southern California.  ...  This work was supported in part by the Center for High Performance Computing and Communications at the University of Southern California.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jcss.2009.11.005">doi:10.1016/j.jcss.2009.11.005</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ppsqx7efubd77l5ct6vcseqew4">fatcat:ppsqx7efubd77l5ct6vcseqew4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171005151132/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/f5f/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMDAyMjAwMDAwOTAwMTIxNA%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/76/43/7643b53593f61c674d494acbc176841f03eb1a73.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jcss.2009.11.005"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Learning Causality: Synthesis of Large-Scale Causal Networks from High-Dimensional Time Series Data [article]

Mark-Oliver Stehr, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky (+2 others)
<span title="2019-05-06">2019</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The complex system of biological cells is a prime example of such a system that is studied in systems biology and has motivated the methods presented in this paper.  ...  Using a combination of Gaussian processes and abstract network modeling, we present three fundamentally different machine-learning-based approaches to learn causal relations and synthesize causal networks  ...  Government is authorized to reproduce and distribute reprints for Government purposes notwithstanding any copyright notation hereon.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1905.02291v1">arXiv:1905.02291v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/tnlycyds5rdrtf2xwjtkqk5z5m">fatcat:tnlycyds5rdrtf2xwjtkqk5z5m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191017013343/https://arxiv.org/pdf/1905.02291v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/08/0a/080a5314fdaa93b3be88f5558111d3c2bc45f5bf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1905.02291v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Cost-effectiveness of Microsoft Academic Graph with machine learning for automated study identification in a living map of coronavirus disease 2019 (COVID-19) research

Ian Shemilt, Anneliese Arno, James Thomas, Theo Lorenc, Claire Khouja, Gary Raine, Katy Sutcliffe, D'Souza Preethy, Irene Kwan, Kath Wright, Amanda Sowden
<span title="2021-08-19">2021</span> <i title="F1000 Research Ltd"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ivjm7jjujbfgfhz5gvdlwjbf2a" style="color: black;">Wellcome Open Research</a> </i> &nbsp;
Microsoft Academic Graph (MAG) is potentially such a source, containing a network graph structure which provides metadata that can be exploited in machine learning processes.  ...  of MEDLINE and Embase (with and without machine learning classifiers, active learning and/or fixed screening targets) for maintaining a living map of COVID-19 research.  ...  and efficiency of study identification workflows for living maps of research and related evidence synthesis.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/wellcomeopenres.17141.1">doi:10.12688/wellcomeopenres.17141.1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/34k53glc5nb3vi7ehlfs2whtta">fatcat:34k53glc5nb3vi7ehlfs2whtta</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210910223800/https://d212y8ha88k086.cloudfront.net/manuscripts/18934/317e2d7c-44c1-43f8-ab09-b86adf98b057_17141_-_james_thomas.pdf?doi=10.12688/wellcomeopenres.17141.1&amp;numberOfBrowsableCollections=8&amp;numberOfBrowsableInstitutionalCollections=0&amp;numberOfBrowsableGateways=14" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a0/d1/a0d16d594f70861dca3a4ed665254d955d8d3a04.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/wellcomeopenres.17141.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

SoK: Chasing Accuracy and Privacy, and Catching Both in Differentially Private Histogram Publication [article]

Boel Nelson, Jenni Reuben
<span title="2020-09-21">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Through a systematic literature review (SLR), we investigate the state-of-the-art within accuracy improving differentially private algorithms for histogram and synthetic data publishing.  ...  The caveat regarding differential privacy is that while it has strong guarantees for privacy, privacy comes at a cost of accuracy.  ...  Places refers to different points in the workflow of a typical differentially private analysis, seeFigure 1  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1910.14028v2">arXiv:1910.14028v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/kv6rdosgdnaqrdfkqyrgytr7ke">fatcat:kv6rdosgdnaqrdfkqyrgytr7ke</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201003094702/https://arxiv.org/pdf/1910.14028v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1910.14028v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Four Steps Towards Sound Business Process Models [chapter]

Juliane Dehnert
<span title="">2003</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
For the definition of the workflow specification we use a particular type of Petri nets.  ...  The thesis provides a methodically well-founded approach for the specification of functional workflow requirements.  ...  Petri net synthesis The synthesis problem for Petri nets is tackled by deciding whether a given graph is isomorphic to the reachability graph of some Petri net.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-540-40022-6_4">doi:10.1007/978-3-540-40022-6_4</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/o3bg66egyrfx5dwva65j3mfuey">fatcat:o3bg66egyrfx5dwva65j3mfuey</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810112731/https://depositonce.tu-berlin.de/bitstream/11303/1048/1/Dokument_8.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/49/af/49afa56374bb3be5f6027c9391177eff9d475182.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-540-40022-6_4"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

EASY Meta-programming with Rascal [chapter]

Paul Klint, Tijs van der Storm, Jurgen Vinju
<span title="">2011</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
Rascal is a new language for meta-programming and is intended to solve problems in the domain of source code analysis and transformation.  ...  In this article we give a high-level overview of the language and illustrate its use by many examples. Rascal is a work in progress both regarding implementation and documentation.  ...  Defining Synthesis Results are synthesized as shown in Figure 1 .10, "Synthesis Workflow". This consists of the following steps: • Determine the results of the synthesis phase.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-18023-1_6">doi:10.1007/978-3-642-18023-1_6</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/r55dkybhcffrfckj7at5fojjka">fatcat:r55dkybhcffrfckj7at5fojjka</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922020719/https://homepages.cwi.nl/~paulk/publications/rascal-gttse-final.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/71/f0/71f0aae61b46094bf84b281907e3a2ee14e14352.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-18023-1_6"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Stemformatics: Visualisation and sharing of stem cell gene expression

Christine A. Wells, Rowland Mosbergen, Othmar Korn, Jarny Choi, Nick Seidenman, Nicholas A. Matigian, Alejandra M. Vitale, Jill Shepherd
<span title="">2013</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a4pdqfs6kfa6hp5fhmgllttetq" style="color: black;">Stem Cell Research</a> </i> &nbsp;
Stemformatics provides a simple mechanism to create, share and analyse gene sets, providing a repository of community-annotated stem cell gene lists that are informative about pathways, lineage commitment  ...  Stemformatics is an easy to use, publicly accessible portal that hosts a large collection of exemplar stem cell data.  ...  Acknowledgments Stemformatics is funded by a grant from the Australian Research Council Special Initiative in Stem Cell Science to CAW through Stem Cells Australia.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.scr.2012.12.003">doi:10.1016/j.scr.2012.12.003</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23466562">pmid:23466562</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wyp4ww7545cw7htkt547q6xzmu">fatcat:wyp4ww7545cw7htkt547q6xzmu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170929093420/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/780/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMTg3MzUwNjExMjAwMTI2Mg%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/47/ee/47ee731f5deb9b33ae174cbd6cf8679c46bfaed3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.scr.2012.12.003"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

CrosstalkNet: A Visualization Tool for Differential Co-expression Networks and Communities

Venkata Manem, George Alexandru Adam, Tina Gruosso, Mathieu Gigoux, Nicholas Bertos, Morag Park, Benjamin Haibe-Kains
<span title="2018-02-19">2018</span> <i title="American Association for Cancer Research (AACR)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/czhppgb4znaghaxcyto6oc7jhe" style="color: black;">Cancer Research</a> </i> &nbsp;
with a community detection algorithm for bipartite graphs to identify significantly dense subnetworks.  ...  Networks are a promising tool to elucidate intercellular interactions, yet exploration of these large-scale networks remains a challenge due to their high dimensionality.  ...  Acknowledgments We thank Gary Bader and Max Franz for their help in using the cytoscape.js framework that has been used to develop the CrosstalkNet web-application.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1158/0008-5472.can-17-1383">doi:10.1158/0008-5472.can-17-1383</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29459407">pmid:29459407</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/q4wloczs55gu5dwsimsrugygky">fatcat:q4wloczs55gu5dwsimsrugygky</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200320052231/https://cancerres.aacrjournals.org/content/canres/78/8/2140.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0d/d4/0dd4ac0486909121d154239fbe6cf3edea15a0e3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1158/0008-5472.can-17-1383"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Testing Differential Privacy with Dual Interpreters [article]

Hengchu Zhang, Edo Roth, Andreas Haeberlen, Benjamin C. Pierce, Aaron Roth
<span title="2020-10-08">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We also demonstrate how DPCheck can be deployed in a practical workflow to test differentially privacy for the 2020 US Census Disclosure Avoidance System (DAS).  ...  We propose here a fully automated framework for testing differential privacy, adapting a well-known "pointwise" technique from informal proofs of differential privacy.  ...  For each algorithm, we built both a correct implementation and several non-differentially-private variants.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2010.04126v1">arXiv:2010.04126v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gefyg52w6ffonamm7frwetwtau">fatcat:gefyg52w6ffonamm7frwetwtau</a> </span>
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Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies

Alexandre G. de Brevern, Jean-Philippe Meyniel, Cécile Fairhead, Cécile Neuvéglise, Alain Malpertuy
<span title="">2015</span> <i title="Hindawi Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/icbhosh775h7bgzgot6avm3cua" style="color: black;">BioMed Research International</a> </i> &nbsp;
Nowadays, NGS technologies allow sequencing of a whole human genome in a few days.  ...  Sequencing the human genome began in 1994, and 10 years of work were necessary in order to provide a nearly complete sequence.  ...  Acknowledgments The authors would like to thank our colleagues of the ATRAGENE, ISOFT, University Paris Diderot, INTS, CNRS, University Paris Sud, and INSERM for their precious advice on this paper.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2015/904541">doi:10.1155/2015/904541</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26125026">pmid:26125026</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4466500/">pmcid:PMC4466500</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/slexkxvpmvcfxfuc5gfrsrp6n4">fatcat:slexkxvpmvcfxfuc5gfrsrp6n4</a> </span>
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Trips-Viz: a transcriptome browser for exploring Ribo-Seq data

Stephen J Kiniry, Patrick B F O'Connor, Audrey M Michel, Pavel V Baranov
<span title="2018-09-20">2018</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Trips-Viz provides a large range of graphical tools for exploring global properties of translatomes and of individual transcripts.  ...  Ribosome profiling (Ribo-Seq) is a technique that allows for the isolation and sequencing of mRNA fragments protected from nuclease digestion by actively translating ribosomes.  ...  ACKNOWLEDGEMENTS We wish to thank Xiangwu Lu, Vimalkumar Velayudhan, Sara Dufour and James Mullan for their help during the development of Trips-Viz.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gky842">doi:10.1093/nar/gky842</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30239879">pmid:30239879</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gpjrcj4abrcqtmcl77zpftyvwq">fatcat:gpjrcj4abrcqtmcl77zpftyvwq</a> </span>
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