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Distributed Biomedical Terminology Development: From Experiments to Open Process
2010
IMIA Yearbook of Medical Informatics
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Results: The trajectory of description logic-driven authoring tools, group process, and web-based platforms suggests that public distributed authoring is likely feasible and practical; however, no compelling ...
Objective: Can social computing efforts materially alter the distributed creation and maintenance of complex biomedical terminologies and ontologies; a review of distributed authoring history and status ...
Chute Chairs the ICD-11 Revision Steering Committee, and is grateful for the input and advise of the World Health Organization. ...
doi:10.1055/s-0038-1638690
fatcat:q6ngwv23avdslehajt2vnvefyq
Profiling ICD-11 Terminological Content Using the Common Terminology Services 2 (CTS2) Standard
2014
International Conference on Biomedical Ontology
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The emerging Common Terminology Services 2 (CTS2) standard provides a common model and semantics for representation, interchange, and federation of terminological resources. ...
The mapping effort was used to develop a prototype of the CTS2 Services Wrapper for the ICD-11. ...
ACKNOWLEDGMENT This work is partly supported by a Mayo-WHO Contract 200822195-1. ...
dblp:conf/icbo/JiangSCUC14
fatcat:afjxmiy47rfpbeiahc3kxwrc5q
Building Standardized Semantic Web RESTful Services to Support ICD-11 Revision
2012
Workshop on Semantic Web Applications and Tools for Life Sciences
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We performed a preliminary evaluation on the usefulness of the system in terms of the feasibility of the services and its potential in support of building the Common Terminology Services 2 (CTS2) compliant ...
We used the Linked Data API and developed simple RESTful services for the standardized ICD-11 contents. ...
Acknowledgement The authors would like to thank two experienced web developers: Kevin Peterson and Cory Endle and two CTS2 experts: Craig Stancl, Harold Solbrig, who participated in the evaluation of the ...
dblp:conf/swat4ls/JiangSC12
fatcat:fvf3uo43gjaztegurrs7dj7j7i
Towards a Rule-based Support System for the Coding of Health Conditions in the Patient Summary
2015
International Semantic Web Conference
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To overcome this issue, a support system based on standardized and formalized coding rules for the domain of application is proposed, to facilitate a more accurate coding process without breaking the law ...
The literature shows that the practice of coding is recognized as a difficult task for GPs and it often generates coding errors and misspecifications of clinical data. ...
Digital Italy (AgID) and by the Seman-ticHealthNet Expert Agreement (prot. 0008991). ...
dblp:conf/semweb/CardilloCEPMFG15
fatcat:4joiotmaane77m7cjbaidlx6xa
Health Concept and Knowledge Management: Twenty-five Years of Evolution
2016
IMIA Yearbook of Medical Informatics
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Objectives: The fields of health terminology, classification, ontology, and related information models have evolved dramatically over the past 25 years. ...
Results: The transformation in size, scope, complexity, and adoption of health terminological systems and information models has been tremendous, on the scale of orders of magnitude. ...
A subset of SNOMED CT was designated as the Common Ontology, and provides the semantic backbone for the Foundation Component, which, while not yet fully populated, has demonstrated methodology and utility ...
doi:10.15265/iys-2016-s037
pmid:27488404
pmcid:PMC5171511
fatcat:vufq7o2uhfdvjfyiuoukz24m4q
A Lexical-Ontological Resource for Consumer Heathcare
[chapter]
2009
Lecture Notes in Computer Science
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The system is based on the development of a consumer-oriented medical terminology which will be integrated with other existing domain ontologies/terminologies into a medical ontology repository. ...
Following this direction, this work suggests a way to support the design of an ontologybased system that mitigates this gap, using knowledge engineering and Semantic Web technologies. ...
[13] ), and for their integration by means of medical ontology repositories, such as the creation of Bio-Portal, a Web-based system that serves as a repository for biomedical ontologies [10] . ...
doi:10.1007/978-3-642-04930-9_60
fatcat:6y4jfqsblfhp3o2p6f5brrzz6e
The CEN ISO Standard Categorial Structure as a Top-Level Set of Constraints for Ontology Disambiguation
2012
International Conference on Biomedical Ontology
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Since 2000 methods, tools and techniques based on upper level ontology and description logic formalism have been developed in the Semantic Web and the bio-ontology communities. ...
The objective of this paper is to analyse the relation between the two approaches in order to promote the complementary use of ontology and structured information model tools in the harmonisation between ...
This can contribute to the WHO/IHTSDO Joint Advisory Group (JAG) works on a common ontological basis for the Foundation Component (FC) of ICD 11 and SNOMED CT. ...
dblp:conf/icbo/RodriguesSBS12
fatcat:pe3wg2mft5bvzb4pegenrjcafi
Medical Vocabulary, Terminological Resources and Information Coding in the Health Domain
[chapter]
2013
Health Informatics Series
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ICD 10, SNOMED CT, and MeSH are among the terminologies used in the examples. ...
Terminological resources are specific representations of medical language for dedicated use in particular health domains. ...
The SNOMED CT ontology is a terminological system increasingly widely adopted by developers of health information systems and is one of the cited terminological references for the implementation of interoperability ...
doi:10.1007/978-2-8178-0478-1_2
fatcat:eertyjzbmvblrojubtmrvhyw2e
Semantic Social Networks for Integrated Healthcare
[chapter]
2013
IFIP Advances in Information and Communication Technology
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The paper discusses a blending of notions of social networks and semantic technologies in order to develop comprehensive personalized and dynamic models of the chronic comorbid patient, their environment ...
An important aspect of integrated care is the provision of personalized patient empowerment and decision support services, especially in case of the chronic patient with comorbidities. ...
This work has been funded in part by the Project HELCOHOP: Development of Electronic Clinical Protocols, 2012-2015, MIS 375876, co-funded by European and National funds. ...
doi:10.1007/978-3-642-40543-3_76
fatcat:se6lq22txrfu7ermyxou25rgei
Formalizing ICD coding rules using Formal Concept Analysis
2009
Journal of Biomedical Informatics
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Objectives: To explore the role of Formal Concept Analysis (FCA) on examining ICD10 coding rules and to develop FCA-based auditing approaches for the formalization process. ...
Conclusion: FCA-based models demonstrate a practical solution for formalizing ICD coding rules. ...
Buntrock for their input and support. Finally, the authors are grateful to the reviewers for their insightful and constructive criticism, which materially improved this work. ...
doi:10.1016/j.jbi.2009.02.005
pmid:19236957
fatcat:egyz2ul45veo3hftrmsxinyjpi
IMIA LaMB WG related event: Proceedings of 3rd International Conference on Biomedical Ontology, 2012, Graz
2019
Zenodo
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This conference carried on the tradition of discussing medical ontologies, increasingly used in biology and medicine, and their use in annotation of both clinical and experimental data is now a common ...
It brings together representatives of all major communities involved in the development and application of ontologies in biomedical research ... ...
While these ontologies are independently developed, the concurrent use of them within the MGI system illuminates some challenges in the intersection of ontologies that MGI ontology developers and curators ...
doi:10.5281/zenodo.3381830
fatcat:pnndilxgzzbujnoqz7pytggtdi
Developing a modular architecture for creation of rule-based clinical diagnostic criteria
2016
BioData Mining
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Using the DCUO, we developed a transformation tool that converts QDM-based diagnostic criteria into Semantic Web Rule Language (SWRL) representation. ...
In this study, we present a modular architecture for enabling the creation of rule-based clinical diagnostic criteria leveraging Semantic Web technologies. ...
Acknowledgments This work is supported in part by funding from: caCDE-QA (U01 CA180940), PhEMA (R01 GM105688) and a Mayo-WHO Contract 200822195-1. ...
doi:10.1186/s13040-016-0113-5
pmid:27785153
pmcid:PMC5073928
fatcat:obaabnfhfffkjkwqo5sugdvwmm
Axioms & templates
2013
Proceedings of the seventh international conference on Knowledge capture - K-CAP '13
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As a step towards a more coordinated approach to knowledge-rich systems and a platform for incorporating additional technologies, we propose factoring systems into "ontology (narrow sense)", the rest of ...
The relationships between "ontologies", knowledge bases, and information models -and correspondingly between OWL/Description Logics, frames and UML -remains confusing to many developers. ...
Our thanks to the Description Logic and Clinical Systems Groups at University of Manchester and to the IHTSDO-WHO Joint Advisory Group on integration of SNOMED CT and ICD11. ...
doi:10.1145/2479832.2479840
dblp:conf/kcap/Rector13
fatcat:mvaczom3tja53d52k36qmiwcqi
Educational Resources as Social Objects in Semantic Social Networks
2011
Extended Semantic Web Conference
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These social facets include: (a) the obvious connections via common tags; (b) connections based on collective usage and other related interaction of human users; (c) social connections based on the inheritance ...
This paper exploits the various aspects of object-centered sociality that the educational resource can manifest in a participatory virtual community of authors and learners. ...
accessible, usable and exploitable. ...
dblp:conf/esws/KaldoudiDGD11
fatcat:vjlabn4vp5f6tiuwnpmferpamm
Monogenetic Rare Diseases in Biomedical Databases and Text Mining
[article]
2022
medRxiv
pre-print
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The developed algorithm allows for the collection of published facts in a unified format starting only with the name of the disease. ...
A special template, which combines research and clinical descriptions of diseases was developed. The approach was tested, and information was collected for 55 rare monogenic diseases. ...
2021, https://meshb.nlm.nih.gov/, DO -Disease Ontology, https://disease-ontology.org/); or private companies (SNOMED, MedDra) . ...
doi:10.1101/2022.04.07.22273575
fatcat:didh7xb6nne7di3n2tckvv3kli